data_5OER # _model_server_result.job_id mYQ3oEHVtkvZTv7ZqTFx4Q _model_server_result.datetime_utc '2025-04-10 18:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5OER # _exptl.entry_id 5OER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OER _cell.length_a 79.1 _cell.length_b 79.1 _cell.length_c 39.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OER _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O ILE 98 A ILE 98 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc2 A OD1 ASP 101 A ASP 101 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc3 A O GLY 104 A GLY 104 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc4 B N1 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.296 ? metalc ? metalc5 B N3 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.492 ? metalc ? metalc6 B N4 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc7 B O1 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 B O3 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 B O5 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 B O7 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 C N1 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.472 ? metalc ? metalc12 C N2 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.353 ? metalc ? metalc13 C N3 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc14 C N4 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc15 C O1 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc16 C O3 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc17 C O5 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc18 C O7 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc19 D GD GD . A GD 203 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc20 E GD GD . A GD 204 1_555 G O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? # _chem_comp.formula 'C17 H32 N4 O7' _chem_comp.formula_weight 404.459 _chem_comp.id DO3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DO3 sing 83 n n N1 C8 DO3 sing 84 n n N1 C10 DO3 sing 85 n n N2 C2 DO3 sing 86 n n N2 C3 DO3 sing 87 n n N2 C12 DO3 sing 88 n n N3 C4 DO3 sing 89 n n N3 C5 DO3 sing 90 n n N3 C14 DO3 sing 91 n n N4 C6 DO3 sing 92 n n N4 C7 DO3 sing 93 n n N4 C16 DO3 sing 94 n n O1 C9 DO3 sing 95 n n O1 HO1 DO3 sing 96 n n O3 C11 DO3 sing 97 n n O3 HO3 DO3 sing 98 n n O5 C13 DO3 sing 99 n n O5 HO5 DO3 sing 100 n n O7 C15 DO3 sing 101 n n O7 HO7 DO3 sing 102 n n C1 C2 DO3 sing 103 n n C1 HC11 DO3 sing 104 n n C1 HC12 DO3 sing 105 n n C2 HC21 DO3 sing 106 n n C2 HC22 DO3 sing 107 n n C3 C4 DO3 sing 108 n n C3 HC31 DO3 sing 109 n n C3 HC32 DO3 sing 110 n n C4 HC41 DO3 sing 111 n n C4 HC42 DO3 sing 112 n n C5 C6 DO3 sing 113 n n C5 HC51 DO3 sing 114 n n C5 HC52 DO3 sing 115 n n C6 HC61 DO3 sing 116 n n C6 HC62 DO3 sing 117 n n C7 C8 DO3 sing 118 n n C7 HC71 DO3 sing 119 n n C7 HC72 DO3 sing 120 n n C8 HC81 DO3 sing 121 n n C8 HC82 DO3 sing 122 n n C9 C10 DO3 sing 123 n n C9 O2 DO3 doub 124 n n C10 H101 DO3 sing 125 n n C10 H102 DO3 sing 126 n n C11 C12 DO3 sing 127 n n C11 O4 DO3 doub 128 n n C12 H121 DO3 sing 129 n n C12 H122 DO3 sing 130 n n C13 C14 DO3 sing 131 n n C13 O6 DO3 doub 132 n n C14 H141 DO3 sing 133 n n C14 H142 DO3 sing 134 n n C15 C16 DO3 sing 135 n n C15 C17 DO3 sing 136 n n C15 HA DO3 sing 137 n n C16 H161 DO3 sing 138 n n C16 H162 DO3 sing 139 n n C17 H171 DO3 sing 140 n n C17 H172 DO3 sing 141 n n C17 H173 DO3 sing 142 n n # _atom_sites.entry_id 5OER _atom_sites.fract_transf_matrix[1][1] 0.012642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DO3 A 1 201 284 DO3 DO3 . C 2 DO3 A 1 202 285 DO3 DO3 . D 3 GD A 1 203 290 GD GD . E 3 GD A 1 204 291 GD GD . F 4 NA A 1 205 1 NA NA . G 5 HOH A 1 301 22 HOH HOH . G 5 HOH A 2 302 89 HOH HOH . G 5 HOH A 3 303 79 HOH HOH . G 5 HOH A 4 304 66 HOH HOH . G 5 HOH A 5 305 7 HOH HOH . G 5 HOH A 6 306 64 HOH HOH . G 5 HOH A 7 307 27 HOH HOH . G 5 HOH A 8 308 59 HOH HOH . G 5 HOH A 9 309 3 HOH HOH . G 5 HOH A 10 310 81 HOH HOH . G 5 HOH A 11 311 97 HOH HOH . G 5 HOH A 12 312 86 HOH HOH . G 5 HOH A 13 313 74 HOH HOH . G 5 HOH A 14 314 35 HOH HOH . G 5 HOH A 15 315 6 HOH HOH . G 5 HOH A 16 316 20 HOH HOH . G 5 HOH A 17 317 94 HOH HOH . G 5 HOH A 18 318 85 HOH HOH . G 5 HOH A 19 319 61 HOH HOH . G 5 HOH A 20 320 82 HOH HOH . G 5 HOH A 21 321 50 HOH HOH . G 5 HOH A 22 322 23 HOH HOH . G 5 HOH A 23 323 101 HOH HOH . G 5 HOH A 24 324 92 HOH HOH . G 5 HOH A 25 325 70 HOH HOH . G 5 HOH A 26 326 78 HOH HOH . G 5 HOH A 27 327 17 HOH HOH . G 5 HOH A 28 328 48 HOH HOH . G 5 HOH A 29 329 34 HOH HOH . G 5 HOH A 30 330 83 HOH HOH . G 5 HOH A 31 331 33 HOH HOH . G 5 HOH A 32 332 95 HOH HOH . G 5 HOH A 33 333 18 HOH HOH . G 5 HOH A 34 334 91 HOH HOH . G 5 HOH A 35 335 51 HOH HOH . G 5 HOH A 36 336 58 HOH HOH . G 5 HOH A 37 337 93 HOH HOH . G 5 HOH A 38 338 63 HOH HOH . G 5 HOH A 39 339 73 HOH HOH . G 5 HOH A 40 340 2 HOH HOH . G 5 HOH A 41 341 96 HOH HOH . G 5 HOH A 42 342 4 HOH HOH . G 5 HOH A 43 343 47 HOH HOH . G 5 HOH A 44 344 13 HOH HOH . G 5 HOH A 45 345 84 HOH HOH . G 5 HOH A 46 346 45 HOH HOH . G 5 HOH A 47 347 77 HOH HOH . G 5 HOH A 48 348 46 HOH HOH . G 5 HOH A 49 349 88 HOH HOH . G 5 HOH A 50 350 25 HOH HOH . G 5 HOH A 51 351 65 HOH HOH . G 5 HOH A 52 352 90 HOH HOH . G 5 HOH A 53 353 100 HOH HOH . G 5 HOH A 54 354 68 HOH HOH . G 5 HOH A 55 355 80 HOH HOH . G 5 HOH A 56 356 32 HOH HOH . G 5 HOH A 57 357 76 HOH HOH . G 5 HOH A 58 358 60 HOH HOH . G 5 HOH A 59 359 99 HOH HOH . G 5 HOH A 60 360 67 HOH HOH . G 5 HOH A 61 361 10 HOH HOH . G 5 HOH A 62 362 30 HOH HOH . G 5 HOH A 63 363 72 HOH HOH . G 5 HOH A 64 364 5 HOH HOH . G 5 HOH A 65 365 75 HOH HOH . G 5 HOH A 66 366 98 HOH HOH . G 5 HOH A 67 367 8 HOH HOH . G 5 HOH A 68 368 71 HOH HOH . G 5 HOH A 69 369 28 HOH HOH . G 5 HOH A 70 370 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DO3 . . . B 2 13.547 42.13 24.392 0.81 20.14 ? N1 DO3 201 A 1 HETATM 2 N N2 DO3 . . . B 2 13.428 44.003 27.728 0.81 19.4 ? N2 DO3 201 A 1 HETATM 3 N N3 DO3 . . . B 2 16.897 42.514 28.51 0.81 19.57 ? N3 DO3 201 A 1 HETATM 4 N N4 DO3 . . . B 2 16.476 40.833 25.655 0.81 19.18 ? N4 DO3 201 A 1 HETATM 5 O O1 DO3 . . . B 2 12.13 40.332 26.285 0.81 21.9 ? O1 DO3 201 A 1 HETATM 6 O O3 DO3 . . . B 2 12.866 41.332 29.067 0.81 17.33 ? O3 DO3 201 A 1 HETATM 7 O O5 DO3 . . . B 2 15.721 39.795 28.819 0.81 18.87 ? O5 DO3 201 A 1 HETATM 8 O O7 DO3 . . . B 2 14.816 38.737 26.067 0.81 18.43 ? O7 DO3 201 A 1 HETATM 9 C C1 DO3 . . . B 2 12.862 42.807 25.535 0.81 19.66 ? C1 DO3 201 A 1 HETATM 10 C C2 DO3 . . . B 2 13.527 44.001 26.228 0.81 19.57 ? C2 DO3 201 A 1 HETATM 11 C C3 DO3 . . . B 2 14.644 43.753 28.55 0.81 19.42 ? C3 DO3 201 A 1 HETATM 12 C C4 DO3 . . . B 2 15.8 43.168 27.755 0.81 19.59 ? C4 DO3 201 A 1 HETATM 13 C C5 DO3 . . . B 2 17.805 41.72 27.629 0.81 19.4 ? C5 DO3 201 A 1 HETATM 14 C C6 DO3 . . . B 2 17.528 41.77 26.115 0.81 19.44 ? C6 DO3 201 A 1 HETATM 15 C C7 DO3 . . . B 2 16.02 41.202 24.295 0.81 19.43 ? C7 DO3 201 A 1 HETATM 16 C C8 DO3 . . . B 2 15.024 42.367 24.239 0.81 19.79 ? C8 DO3 201 A 1 HETATM 17 C C9 DO3 . . . B 2 12.035 40.127 25.054 0.81 21.54 ? C9 DO3 201 A 1 HETATM 18 C C10 DO3 . . . B 2 13.039 40.757 24.098 0.81 20.6 ? C10 DO3 201 A 1 HETATM 19 C C11 DO3 . . . B 2 12.163 42.358 29.268 0.81 18.43 ? C11 DO3 201 A 1 HETATM 20 C C12 DO3 . . . B 2 12.136 43.538 28.3 0.81 18.59 ? C12 DO3 201 A 1 HETATM 21 C C13 DO3 . . . B 2 16.31 40.345 29.778 0.81 19.64 ? C13 DO3 201 A 1 HETATM 22 C C14 DO3 . . . B 2 16.548 41.847 29.803 0.81 19.42 ? C14 DO3 201 A 1 HETATM 23 C C15 DO3 . . . B 2 16.027 38.399 25.38 0.81 18.83 ? C15 DO3 201 A 1 HETATM 24 C C16 DO3 . . . B 2 17.07 39.483 25.612 0.81 18.99 ? C16 DO3 201 A 1 HETATM 25 C C17 DO3 . . . B 2 16.565 37.054 25.84 0.81 18.66 ? C17 DO3 201 A 1 HETATM 26 O O2 DO3 . . . B 2 11.154 39.374 24.581 0.81 22.12 ? O2 DO3 201 A 1 HETATM 27 O O4 DO3 . . . B 2 11.442 42.461 30.282 0.81 18.01 ? O4 DO3 201 A 1 HETATM 28 O O6 DO3 . . . B 2 16.707 39.687 30.765 0.81 19.95 ? O6 DO3 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 950 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #