data_5OER # _model_server_result.job_id yD2m3u3mXAWXRScwkriQtw _model_server_result.datetime_utc '2024-10-19 05:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5OER # _exptl.entry_id 5OER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OER _cell.length_a 79.1 _cell.length_b 79.1 _cell.length_c 39.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OER _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O ILE 98 A ILE 98 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc2 A OD1 ASP 101 A ASP 101 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc3 A O GLY 104 A GLY 104 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc4 B N1 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.296 ? metalc ? metalc5 B N3 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.492 ? metalc ? metalc6 B N4 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc7 B O1 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 B O3 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 B O5 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 B O7 DO3 . A DO3 201 1_555 D GD GD . A GD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc11 C N1 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.472 ? metalc ? metalc12 C N2 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.353 ? metalc ? metalc13 C N3 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc14 C N4 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc15 C O1 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc16 C O3 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc17 C O5 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc18 C O7 DO3 . A DO3 202 1_555 E GD GD . A GD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc19 D GD GD . A GD 203 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc20 E GD GD . A GD 204 1_555 G O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OER _atom_sites.fract_transf_matrix[1][1] 0.012642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DO3 A 1 201 284 DO3 DO3 . C 2 DO3 A 1 202 285 DO3 DO3 . D 3 GD A 1 203 290 GD GD . E 3 GD A 1 204 291 GD GD . F 4 NA A 1 205 1 NA NA . G 5 HOH A 1 301 22 HOH HOH . G 5 HOH A 2 302 89 HOH HOH . G 5 HOH A 3 303 79 HOH HOH . G 5 HOH A 4 304 66 HOH HOH . G 5 HOH A 5 305 7 HOH HOH . G 5 HOH A 6 306 64 HOH HOH . G 5 HOH A 7 307 27 HOH HOH . G 5 HOH A 8 308 59 HOH HOH . G 5 HOH A 9 309 3 HOH HOH . G 5 HOH A 10 310 81 HOH HOH . G 5 HOH A 11 311 97 HOH HOH . G 5 HOH A 12 312 86 HOH HOH . G 5 HOH A 13 313 74 HOH HOH . G 5 HOH A 14 314 35 HOH HOH . G 5 HOH A 15 315 6 HOH HOH . G 5 HOH A 16 316 20 HOH HOH . G 5 HOH A 17 317 94 HOH HOH . G 5 HOH A 18 318 85 HOH HOH . G 5 HOH A 19 319 61 HOH HOH . G 5 HOH A 20 320 82 HOH HOH . G 5 HOH A 21 321 50 HOH HOH . G 5 HOH A 22 322 23 HOH HOH . G 5 HOH A 23 323 101 HOH HOH . G 5 HOH A 24 324 92 HOH HOH . G 5 HOH A 25 325 70 HOH HOH . G 5 HOH A 26 326 78 HOH HOH . G 5 HOH A 27 327 17 HOH HOH . G 5 HOH A 28 328 48 HOH HOH . G 5 HOH A 29 329 34 HOH HOH . G 5 HOH A 30 330 83 HOH HOH . G 5 HOH A 31 331 33 HOH HOH . G 5 HOH A 32 332 95 HOH HOH . G 5 HOH A 33 333 18 HOH HOH . G 5 HOH A 34 334 91 HOH HOH . G 5 HOH A 35 335 51 HOH HOH . G 5 HOH A 36 336 58 HOH HOH . G 5 HOH A 37 337 93 HOH HOH . G 5 HOH A 38 338 63 HOH HOH . G 5 HOH A 39 339 73 HOH HOH . G 5 HOH A 40 340 2 HOH HOH . G 5 HOH A 41 341 96 HOH HOH . G 5 HOH A 42 342 4 HOH HOH . G 5 HOH A 43 343 47 HOH HOH . G 5 HOH A 44 344 13 HOH HOH . G 5 HOH A 45 345 84 HOH HOH . G 5 HOH A 46 346 45 HOH HOH . G 5 HOH A 47 347 77 HOH HOH . G 5 HOH A 48 348 46 HOH HOH . G 5 HOH A 49 349 88 HOH HOH . G 5 HOH A 50 350 25 HOH HOH . G 5 HOH A 51 351 65 HOH HOH . G 5 HOH A 52 352 90 HOH HOH . G 5 HOH A 53 353 100 HOH HOH . G 5 HOH A 54 354 68 HOH HOH . G 5 HOH A 55 355 80 HOH HOH . G 5 HOH A 56 356 32 HOH HOH . G 5 HOH A 57 357 76 HOH HOH . G 5 HOH A 58 358 60 HOH HOH . G 5 HOH A 59 359 99 HOH HOH . G 5 HOH A 60 360 67 HOH HOH . G 5 HOH A 61 361 10 HOH HOH . G 5 HOH A 62 362 30 HOH HOH . G 5 HOH A 63 363 72 HOH HOH . G 5 HOH A 64 364 5 HOH HOH . G 5 HOH A 65 365 75 HOH HOH . G 5 HOH A 66 366 98 HOH HOH . G 5 HOH A 67 367 8 HOH HOH . G 5 HOH A 68 368 71 HOH HOH . G 5 HOH A 69 369 28 HOH HOH . G 5 HOH A 70 370 62 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.598 _atom_site.Cartn_y 37.335 _atom_site.Cartn_z 18.698 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #