data_5OEU # _model_server_result.job_id Z1m1FivKtT5P-503qiHtFQ _model_server_result.datetime_utc '2024-10-25 06:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oeu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5OEU # _exptl.entry_id 5OEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OEU _cell.length_a 80.27 _cell.length_b 121.079 _cell.length_c 128.338 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 175 A GLU 175 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc2 A OE2 GLU 175 A GLU 175 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc3 A O VAL 176 A VAL 176 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc4 A O SER 335 A SER 335 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc5 A OD2 ASP 360 A ASP 360 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc6 A OE1 GLU 459 A GLU 459 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc7 C O2B ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 E MG MG . A MG 603 1_555 J O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc9 F MG MG . A MG 604 3_444 B OE2 GLU 97 C GLU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc10 B OE1 GLU 175 C GLU 175 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc11 B O VAL 176 C VAL 176 1_555 I MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc12 B O SER 335 C SER 335 1_555 I MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc13 G O1B ADP . C ADP 601 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc14 G O1A ADP . C ADP 601 1_555 H MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc15 I MG MG . C MG 603 1_555 K O HOH . C HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc16 I MG MG . C MG 603 1_555 K O HOH . C HOH 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5OEU _atom_sites.fract_transf_matrix[1][1] 0.012458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 601 523 ADP ADP . D 3 MG A 1 602 1 MG MG . E 3 MG A 1 603 2 MG MG . F 3 MG A 1 604 4 MG MG . G 2 ADP C 1 601 523 ADP ADP . H 3 MG C 1 602 3 MG MG . I 3 MG C 1 603 5 MG MG . J 4 HOH A 1 701 59 HOH HOH . J 4 HOH A 2 702 70 HOH HOH . J 4 HOH A 3 703 69 HOH HOH . J 4 HOH A 4 704 68 HOH HOH . J 4 HOH A 5 705 12 HOH HOH . J 4 HOH A 6 706 21 HOH HOH . J 4 HOH A 7 707 3 HOH HOH . J 4 HOH A 8 708 4 HOH HOH . J 4 HOH A 9 709 63 HOH HOH . J 4 HOH A 10 710 62 HOH HOH . J 4 HOH A 11 711 24 HOH HOH . J 4 HOH A 12 712 5 HOH HOH . J 4 HOH A 13 713 15 HOH HOH . J 4 HOH A 14 714 40 HOH HOH . J 4 HOH A 15 715 65 HOH HOH . J 4 HOH A 16 716 17 HOH HOH . J 4 HOH A 17 717 8 HOH HOH . J 4 HOH A 18 718 56 HOH HOH . J 4 HOH A 19 719 79 HOH HOH . J 4 HOH A 20 720 55 HOH HOH . J 4 HOH A 21 721 67 HOH HOH . J 4 HOH A 22 722 34 HOH HOH . J 4 HOH A 23 723 61 HOH HOH . J 4 HOH A 24 724 66 HOH HOH . J 4 HOH A 25 725 86 HOH HOH . J 4 HOH A 26 726 64 HOH HOH . J 4 HOH A 27 727 32 HOH HOH . J 4 HOH A 28 728 20 HOH HOH . K 4 HOH C 1 701 81 HOH HOH . K 4 HOH C 2 702 1 HOH HOH . K 4 HOH C 3 703 71 HOH HOH . K 4 HOH C 4 704 73 HOH HOH . K 4 HOH C 5 705 51 HOH HOH . K 4 HOH C 6 706 28 HOH HOH . K 4 HOH C 7 707 25 HOH HOH . K 4 HOH C 8 708 23 HOH HOH . K 4 HOH C 9 709 10 HOH HOH . K 4 HOH C 10 710 38 HOH HOH . K 4 HOH C 11 711 77 HOH HOH . K 4 HOH C 12 712 60 HOH HOH . K 4 HOH C 13 713 52 HOH HOH . K 4 HOH C 14 714 49 HOH HOH . K 4 HOH C 15 715 74 HOH HOH . K 4 HOH C 16 716 85 HOH HOH . K 4 HOH C 17 717 6 HOH HOH . K 4 HOH C 18 718 76 HOH HOH . K 4 HOH C 19 719 26 HOH HOH . K 4 HOH C 20 720 75 HOH HOH . K 4 HOH C 21 721 87 HOH HOH . K 4 HOH C 22 722 54 HOH HOH . K 4 HOH C 23 723 22 HOH HOH . K 4 HOH C 24 724 88 HOH HOH . K 4 HOH C 25 725 13 HOH HOH . K 4 HOH C 26 726 19 HOH HOH . K 4 HOH C 27 727 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 -12.072 40.038 -29.865 1 88.54 ? PB ADP 601 A 1 HETATM 2 O O1B ADP . . . C 2 -12.45 40.357 -31.295 1 88.15 ? O1B ADP 601 A 1 HETATM 3 O O2B ADP . . . C 2 -13.085 39.128 -29.154 1 84.51 ? O2B ADP 601 A 1 HETATM 4 O O3B ADP . . . C 2 -10.631 39.606 -29.697 1 87.75 ? O3B ADP 601 A 1 HETATM 5 P PA ADP . . . C 2 -12.538 41.98 -27.716 1 68.35 ? PA ADP 601 A 1 HETATM 6 O O1A ADP . . . C 2 -12.625 43.473 -27.788 1 73.37 ? O1A ADP 601 A 1 HETATM 7 O O2A ADP . . . C 2 -13.801 41.228 -27.354 1 69.23 ? O2A ADP 601 A 1 HETATM 8 O O3A ADP . . . C 2 -12.019 41.517 -29.179 1 79.36 ? O3A ADP 601 A 1 HETATM 9 O O5' ADP . . . C 2 -11.306 41.689 -26.706 1 66.49 ? O5' ADP 601 A 1 HETATM 10 C C5' ADP . . . C 2 -10.988 40.42 -26.131 1 64.92 ? C5' ADP 601 A 1 HETATM 11 C C4' ADP . . . C 2 -11.256 40.339 -24.617 1 65.88 ? C4' ADP 601 A 1 HETATM 12 O O4' ADP . . . C 2 -10.788 41.458 -23.839 1 66.23 ? O4' ADP 601 A 1 HETATM 13 C C3' ADP . . . C 2 -12.735 40.232 -24.251 1 66.05 ? C3' ADP 601 A 1 HETATM 14 O O3' ADP . . . C 2 -13.282 38.943 -24.539 1 66.92 ? O3' ADP 601 A 1 HETATM 15 C C2' ADP . . . C 2 -12.735 40.588 -22.776 1 66.73 ? C2' ADP 601 A 1 HETATM 16 O O2' ADP . . . C 2 -12.344 39.492 -21.932 1 69.29 ? O2' ADP 601 A 1 HETATM 17 C C1' ADP . . . C 2 -11.679 41.682 -22.726 1 65.9 ? C1' ADP 601 A 1 HETATM 18 N N9 ADP . . . C 2 -12.366 43.001 -22.82 1 63.62 ? N9 ADP 601 A 1 HETATM 19 C C8 ADP . . . C 2 -12.779 43.594 -23.952 1 60.92 ? C8 ADP 601 A 1 HETATM 20 N N7 ADP . . . C 2 -13.359 44.775 -23.678 1 60.39 ? N7 ADP 601 A 1 HETATM 21 C C5 ADP . . . C 2 -13.349 44.959 -22.358 1 60.45 ? C5 ADP 601 A 1 HETATM 22 C C6 ADP . . . C 2 -13.812 46.007 -21.427 1 59.88 ? C6 ADP 601 A 1 HETATM 23 N N6 ADP . . . C 2 -14.424 47.113 -21.888 1 59.35 ? N6 ADP 601 A 1 HETATM 24 N N1 ADP . . . C 2 -13.589 45.815 -20.106 1 60.9 ? N1 ADP 601 A 1 HETATM 25 C C2 ADP . . . C 2 -12.974 44.7 -19.637 1 61.36 ? C2 ADP 601 A 1 HETATM 26 N N3 ADP . . . C 2 -12.542 43.71 -20.435 1 61.41 ? N3 ADP 601 A 1 HETATM 27 C C4 ADP . . . C 2 -12.692 43.78 -21.784 1 62.36 ? C4 ADP 601 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #