data_5OFA # _model_server_result.job_id dOt0ioHRKOskStI2XeenZQ _model_server_result.datetime_utc '2024-10-11 00:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ofa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":703}' # _entry.id 5OFA # _exptl.entry_id 5OFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.91 _cell.angle_gamma 90 _cell.entry_id 5OFA _cell.length_a 69.61 _cell.length_b 125.73 _cell.length_c 81.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 42 B ASN 39 1_555 E MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 A SG CYS 502 B CYS 499 1_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 A SG CYS 505 B CYS 502 1_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc4 A SG CYS 528 B CYS 525 1_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc5 A SG CYS 539 B CYS 536 1_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc6 D O1G ANP . B ANP 702 1_555 E MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc7 D O2B ANP . B ANP 702 1_555 E MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 D O2A ANP . B ANP 702 1_555 E MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 E MG MG . B MG 703 1_555 I O HOH . B HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc10 B OD1 ASN 42 A ASN 39 1_555 H MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc11 B SG CYS 502 A CYS 499 1_555 F ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc12 B SG CYS 505 A CYS 502 1_555 F ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc13 B SG CYS 528 A CYS 525 1_555 F ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc14 B SG CYS 539 A CYS 536 1_555 F ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc15 G O2G ANP . A ANP 702 1_555 H MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc16 G O2B ANP . A ANP 702 1_555 H MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc17 G O2A ANP . A ANP 702 1_555 H MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc18 H MG MG . A MG 703 1_555 J O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc19 H MG MG . A MG 703 1_555 J O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OFA _atom_sites.fract_transf_matrix[1][1] 0.014366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001995 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN B 1 701 591 ZN ZN . D 3 ANP B 1 702 1 ANP ANP . E 4 MG B 1 703 1 MG MG . F 2 ZN A 1 701 591 ZN ZN . G 3 ANP A 1 702 2 ANP ANP . H 4 MG A 1 703 2 MG MG . I 5 HOH B 1 801 34 HOH HOH . I 5 HOH B 2 802 8 HOH HOH . I 5 HOH B 3 803 19 HOH HOH . I 5 HOH B 4 804 4 HOH HOH . I 5 HOH B 5 805 13 HOH HOH . I 5 HOH B 6 806 37 HOH HOH . I 5 HOH B 7 807 29 HOH HOH . I 5 HOH B 8 808 20 HOH HOH . I 5 HOH B 9 809 25 HOH HOH . I 5 HOH B 10 810 9 HOH HOH . I 5 HOH B 11 811 11 HOH HOH . I 5 HOH B 12 812 2 HOH HOH . I 5 HOH B 13 813 15 HOH HOH . I 5 HOH B 14 814 5 HOH HOH . I 5 HOH B 15 815 21 HOH HOH . I 5 HOH B 16 816 1 HOH HOH . I 5 HOH B 17 817 24 HOH HOH . I 5 HOH B 18 818 6 HOH HOH . I 5 HOH B 19 819 18 HOH HOH . I 5 HOH B 20 820 10 HOH HOH . I 5 HOH B 21 821 14 HOH HOH . I 5 HOH B 22 822 17 HOH HOH . I 5 HOH B 23 823 31 HOH HOH . I 5 HOH B 24 824 23 HOH HOH . I 5 HOH B 25 825 16 HOH HOH . I 5 HOH B 26 826 40 HOH HOH . I 5 HOH B 27 827 38 HOH HOH . J 5 HOH A 1 801 27 HOH HOH . J 5 HOH A 2 802 33 HOH HOH . J 5 HOH A 3 803 22 HOH HOH . J 5 HOH A 4 804 39 HOH HOH . J 5 HOH A 5 805 35 HOH HOH . J 5 HOH A 6 806 12 HOH HOH . J 5 HOH A 7 807 3 HOH HOH . J 5 HOH A 8 808 26 HOH HOH . J 5 HOH A 9 809 7 HOH HOH . J 5 HOH A 10 810 36 HOH HOH . J 5 HOH A 11 811 30 HOH HOH . J 5 HOH A 12 812 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -17.162 _atom_site.Cartn_y -42.42 _atom_site.Cartn_z -16.111 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #