data_5OFD # _model_server_result.job_id Bjxtb_zLIgJLW_VfgHCRwA _model_server_result.datetime_utc '2025-04-27 19:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ofd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5OFD # _exptl.entry_id 5OFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OFD _cell.length_a 95.022 _cell.length_b 95.022 _cell.length_c 95.022 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -47.511 0 -47.511 3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 47.511 -47.511 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 89 A HIS 95 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A NE2 HIS 94 A HIS 100 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 A NE2 HIS 129 A HIS 135 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A SG CYS 130 A CYS 136 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 A ND1 HIS 139 A HIS 145 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 A SD MET 144 A MET 150 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc7 A NE2 HIS 300 A HIS 306 1_555 C CU CU . A CU 402 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OFD _atom_sites.fract_transf_matrix[1][1] 0.010524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 401 500 CU CU . C 2 CU A 1 402 501 CU CU . D 3 NO A 1 403 1 NO NO . E 4 HOH A 1 501 637 HOH HOH . E 4 HOH A 2 502 45 HOH HOH . E 4 HOH A 3 503 351 HOH HOH . E 4 HOH A 4 504 25 HOH HOH . E 4 HOH A 5 505 57 HOH HOH . E 4 HOH A 6 506 629 HOH HOH . E 4 HOH A 7 507 248 HOH HOH . E 4 HOH A 8 508 65 HOH HOH . E 4 HOH A 9 509 95 HOH HOH . E 4 HOH A 10 510 24 HOH HOH . E 4 HOH A 11 511 97 HOH HOH . E 4 HOH A 12 512 115 HOH HOH . E 4 HOH A 13 513 234 HOH HOH . E 4 HOH A 14 514 216 HOH HOH . E 4 HOH A 15 515 59 HOH HOH . E 4 HOH A 16 516 182 HOH HOH . E 4 HOH A 17 517 98 HOH HOH . E 4 HOH A 18 518 212 HOH HOH . E 4 HOH A 19 519 23 HOH HOH . E 4 HOH A 20 520 53 HOH HOH . E 4 HOH A 21 521 16 HOH HOH . E 4 HOH A 22 522 8 HOH HOH . E 4 HOH A 23 523 236 HOH HOH . E 4 HOH A 24 524 47 HOH HOH . E 4 HOH A 25 525 31 HOH HOH . E 4 HOH A 26 526 160 HOH HOH . E 4 HOH A 27 527 4 HOH HOH . E 4 HOH A 28 528 75 HOH HOH . E 4 HOH A 29 529 76 HOH HOH . E 4 HOH A 30 530 3 HOH HOH . E 4 HOH A 31 531 41 HOH HOH . E 4 HOH A 32 532 187 HOH HOH . E 4 HOH A 33 533 21 HOH HOH . E 4 HOH A 34 534 69 HOH HOH . E 4 HOH A 35 535 124 HOH HOH . E 4 HOH A 36 536 237 HOH HOH . E 4 HOH A 37 537 73 HOH HOH . E 4 HOH A 38 538 22 HOH HOH . E 4 HOH A 39 539 245 HOH HOH . E 4 HOH A 40 540 15 HOH HOH . E 4 HOH A 41 541 14 HOH HOH . E 4 HOH A 42 542 2 HOH HOH . E 4 HOH A 43 543 242 HOH HOH . E 4 HOH A 44 544 18 HOH HOH . E 4 HOH A 45 545 68 HOH HOH . E 4 HOH A 46 546 240 HOH HOH . E 4 HOH A 47 547 6 HOH HOH . E 4 HOH A 48 548 246 HOH HOH . E 4 HOH A 49 549 84 HOH HOH . E 4 HOH A 50 550 29 HOH HOH . E 4 HOH A 51 551 634 HOH HOH . E 4 HOH A 52 552 67 HOH HOH . E 4 HOH A 53 553 72 HOH HOH . E 4 HOH A 54 554 35 HOH HOH . E 4 HOH A 55 555 11 HOH HOH . E 4 HOH A 56 556 174 HOH HOH . E 4 HOH A 57 557 51 HOH HOH . E 4 HOH A 58 558 7 HOH HOH . E 4 HOH A 59 559 80 HOH HOH . E 4 HOH A 60 560 290 HOH HOH . E 4 HOH A 61 561 5 HOH HOH . E 4 HOH A 62 562 235 HOH HOH . E 4 HOH A 63 563 52 HOH HOH . E 4 HOH A 64 564 33 HOH HOH . E 4 HOH A 65 565 244 HOH HOH . E 4 HOH A 66 566 26 HOH HOH . E 4 HOH A 67 567 34 HOH HOH . E 4 HOH A 68 568 105 HOH HOH . E 4 HOH A 69 569 173 HOH HOH . E 4 HOH A 70 570 113 HOH HOH . E 4 HOH A 71 571 233 HOH HOH . E 4 HOH A 72 572 36 HOH HOH . E 4 HOH A 73 573 19 HOH HOH . E 4 HOH A 74 574 287 HOH HOH . E 4 HOH A 75 575 79 HOH HOH . E 4 HOH A 76 576 232 HOH HOH . E 4 HOH A 77 577 64 HOH HOH . E 4 HOH A 78 578 37 HOH HOH . E 4 HOH A 79 579 10 HOH HOH . E 4 HOH A 80 580 28 HOH HOH . E 4 HOH A 81 581 66 HOH HOH . E 4 HOH A 82 582 30 HOH HOH . E 4 HOH A 83 583 102 HOH HOH . E 4 HOH A 84 584 70 HOH HOH . E 4 HOH A 85 585 12 HOH HOH . E 4 HOH A 86 586 119 HOH HOH . E 4 HOH A 87 587 60 HOH HOH . E 4 HOH A 88 588 268 HOH HOH . E 4 HOH A 89 589 39 HOH HOH . E 4 HOH A 90 590 13 HOH HOH . E 4 HOH A 91 591 9 HOH HOH . E 4 HOH A 92 592 32 HOH HOH . E 4 HOH A 93 593 289 HOH HOH . E 4 HOH A 94 594 156 HOH HOH . E 4 HOH A 95 595 129 HOH HOH . E 4 HOH A 96 596 281 HOH HOH . E 4 HOH A 97 597 230 HOH HOH . E 4 HOH A 98 598 229 HOH HOH . E 4 HOH A 99 599 636 HOH HOH . E 4 HOH A 100 600 46 HOH HOH . E 4 HOH A 101 601 83 HOH HOH . E 4 HOH A 102 602 82 HOH HOH . E 4 HOH A 103 603 78 HOH HOH . E 4 HOH A 104 604 49 HOH HOH . E 4 HOH A 105 605 71 HOH HOH . E 4 HOH A 106 606 595 HOH HOH . E 4 HOH A 107 607 88 HOH HOH . E 4 HOH A 108 608 628 HOH HOH . E 4 HOH A 109 609 125 HOH HOH . E 4 HOH A 110 610 58 HOH HOH . E 4 HOH A 111 611 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -32.856 _atom_site.Cartn_y 16.518 _atom_site.Cartn_z 4.672 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #