data_5OFQ # _model_server_result.job_id -YX6gkWnXFsf94CF0BDHHA _model_server_result.datetime_utc '2025-01-25 10:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ofq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 5OFQ # _exptl.entry_id 5OFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OFQ _cell.length_a 77.125 _cell.length_b 155.534 _cell.length_c 158.151 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Q 1 1 B,J,K,L,R 2 1 C,M,N,O,S 3 1 D,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 351 A CYS 351 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 B SG CYS 351 B CYS 351 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 C SG CYS 351 C CYS 351 1_555 O FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 D SG CYS 351 D CYS 351 1_555 P FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 166 n n CHA C4D HEM doub 167 n n CHA HHA HEM sing 168 n n CHB C4A HEM sing 169 n n CHB C1B HEM doub 170 n n CHB HHB HEM sing 171 n n CHC C4B HEM sing 172 n n CHC C1C HEM doub 173 n n CHC HHC HEM sing 174 n n CHD C4C HEM doub 175 n n CHD C1D HEM sing 176 n n CHD HHD HEM sing 177 n n C1A C2A HEM doub 178 n y C1A NA HEM sing 179 n y C2A C3A HEM sing 180 n y C2A CAA HEM sing 181 n n C3A C4A HEM doub 182 n y C3A CMA HEM sing 183 n n C4A NA HEM sing 184 n y CMA HMA HEM sing 185 n n CMA HMAA HEM sing 186 n n CMA HMAB HEM sing 187 n n CAA CBA HEM sing 188 n n CAA HAA HEM sing 189 n n CAA HAAA HEM sing 190 n n CBA CGA HEM sing 191 n n CBA HBA HEM sing 192 n n CBA HBAA HEM sing 193 n n CGA O1A HEM doub 194 n n CGA O2A HEM sing 195 n n C1B C2B HEM sing 196 n n C1B NB HEM sing 197 n n C2B C3B HEM doub 198 n n C2B CMB HEM sing 199 n n C3B C4B HEM sing 200 n n C3B CAB HEM sing 201 n n C4B NB HEM doub 202 n n CMB HMB HEM sing 203 n n CMB HMBA HEM sing 204 n n CMB HMBB HEM sing 205 n n CAB CBB HEM doub 206 n n CAB HAB HEM sing 207 n n CBB HBB HEM sing 208 n n CBB HBBA HEM sing 209 n n C1C C2C HEM sing 210 n y C1C NC HEM sing 211 n y C2C C3C HEM doub 212 n y C2C CMC HEM sing 213 n n C3C C4C HEM sing 214 n y C3C CAC HEM sing 215 n n C4C NC HEM sing 216 n y CMC HMC HEM sing 217 n n CMC HMCA HEM sing 218 n n CMC HMCB HEM sing 219 n n CAC CBC HEM doub 220 n n CAC HAC HEM sing 221 n n CBC HBC HEM sing 222 n n CBC HBCA HEM sing 223 n n C1D C2D HEM sing 224 n n C1D ND HEM doub 225 n n C2D C3D HEM doub 226 n n C2D CMD HEM sing 227 n n C3D C4D HEM sing 228 n n C3D CAD HEM sing 229 n n C4D ND HEM sing 230 n n CMD HMD HEM sing 231 n n CMD HMDA HEM sing 232 n n CMD HMDB HEM sing 233 n n CAD CBD HEM sing 234 n n CAD HAD HEM sing 235 n n CAD HADA HEM sing 236 n n CBD CGD HEM sing 237 n n CBD HBD HEM sing 238 n n CBD HBDA HEM sing 239 n n CGD O1D HEM doub 240 n n CGD O2D HEM sing 241 n n O2A H2A HEM sing 242 n n O2D H2D HEM sing 243 n n FE NA HEM sing 244 n n FE NB HEM sing 245 n n FE NC HEM sing 246 n n FE ND HEM sing 247 n n # _atom_sites.entry_id 5OFQ _atom_sites.fract_transf_matrix[1][1] 0.012966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 501 HEM HEM . F 3 1PE A 1 502 605 1PE 1PE . G 3 1PE A 1 503 606 1PE 1PE . H 4 SO4 A 1 504 607 SO4 SO4 . I 4 SO4 A 1 505 608 SO4 SO4 . J 2 HEM B 1 501 501 HEM HEM . K 3 1PE B 1 502 603 1PE 1PE . L 4 SO4 B 1 503 604 SO4 SO4 . M 3 1PE C 1 501 603 1PE 1PE . N 3 1PE C 1 502 604 1PE 1PE . O 2 HEM C 1 503 501 HEM HEM . P 2 HEM D 1 501 501 HEM HEM . Q 5 HOH A 1 601 612 HOH HOH . Q 5 HOH A 2 602 610 HOH HOH . Q 5 HOH A 3 603 611 HOH HOH . Q 5 HOH A 4 604 609 HOH HOH . R 5 HOH B 1 601 606 HOH HOH . R 5 HOH B 2 602 605 HOH HOH . S 5 HOH C 1 601 604 HOH HOH . S 5 HOH C 2 602 603 HOH HOH . T 5 HOH D 1 601 609 HOH HOH . T 5 HOH D 2 602 606 HOH HOH . T 5 HOH D 3 603 605 HOH HOH . T 5 HOH D 4 604 604 HOH HOH . T 5 HOH D 5 605 603 HOH HOH . T 5 HOH D 6 606 607 HOH HOH . T 5 HOH D 7 607 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 2 35.665 -66.373 34.534 1 45.29 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . J 2 32.249 -64.482 31.764 1 44.08 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . J 2 35.321 -63.634 28.18 1 43.44 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . J 2 38.53 -66.029 30.759 1 44.81 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . J 2 34.48 -65.883 34.108 1 45.38 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . J 2 33.294 -65.775 34.904 1 45.27 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . J 2 32.364 -65.256 34.139 1 44.86 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . J 2 32.922 -65.018 32.831 1 44.87 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . J 2 30.926 -64.972 34.585 1 44.36 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . J 2 33.133 -66.162 36.378 1 45.64 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . J 2 32.415 -67.495 36.505 1 46.17 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . J 2 32.375 -67.877 37.945 1 44.85 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . J 2 32.54 -66.979 38.796 1 44.2 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . J 2 32.224 -69.079 38.224 1 44.53 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . J 2 32.774 -64.064 30.569 1 44.03 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . J 2 32.057 -63.368 29.524 1 43.26 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . J 2 32.929 -63.173 28.541 1 42.88 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . J 2 34.193 -63.689 28.94 1 43.72 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . J 2 30.553 -63.013 29.58 1 42.31 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . J 2 32.799 -62.514 27.178 1 42.04 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . J 2 31.835 -61.672 26.88 1 41.11 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . J 2 36.469 -64.226 28.573 1 43.75 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . J 2 37.686 -64.278 27.817 1 43.77 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . J 2 38.558 -64.938 28.546 1 44.18 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . J 2 37.909 -65.308 29.775 1 44.52 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . J 2 37.876 -63.672 26.424 1 42.65 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . J 2 40.014 -65.287 28.23 1 44.18 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . J 2 40.492 -65.339 26.986 1 45.45 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . J 2 38.039 -66.362 31.987 1 45.14 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . J 2 38.733 -67.118 33 1 45.29 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . J 2 37.948 -67.199 34.043 1 44.96 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . J 2 36.733 -66.521 33.715 1 45.36 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . J 2 40.144 -67.732 32.912 1 44.97 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . J 2 38.27 -67.912 35.354 1 44.18 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . J 2 38.815 -66.903 36.337 1 43.61 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . J 2 38.906 -67.511 37.689 1 42.74 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . J 2 39.663 -67.032 38.533 1 41.85 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . J 2 38.217 -68.502 37.95 1 42.8 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . J 2 34.229 -65.412 32.846 1 45.31 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . J 2 34.076 -64.243 30.187 1 44.36 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . J 2 36.618 -64.854 29.775 1 44.18 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . J 2 36.808 -66.014 32.455 1 45.31 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . J 2 35.321 -65.236 31.321 1 49.45 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #