data_5OFQ # _model_server_result.job_id ILyl9Twnqmaov4ZS2_HyVA _model_server_result.datetime_utc '2025-01-10 12:45:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ofq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":501}' # _entry.id 5OFQ # _exptl.entry_id 5OFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OFQ _cell.length_a 77.125 _cell.length_b 155.534 _cell.length_c 158.151 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Q 1 1 B,J,K,L,R 2 1 C,M,N,O,S 3 1 D,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 K N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 351 A CYS 351 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 B SG CYS 351 B CYS 351 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 C SG CYS 351 C CYS 351 1_555 O FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 D SG CYS 351 D CYS 351 1_555 P FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5OFQ _atom_sites.fract_transf_matrix[1][1] 0.012966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 501 HEM HEM . F 3 1PE A 1 502 605 1PE 1PE . G 3 1PE A 1 503 606 1PE 1PE . H 4 SO4 A 1 504 607 SO4 SO4 . I 4 SO4 A 1 505 608 SO4 SO4 . J 2 HEM B 1 501 501 HEM HEM . K 3 1PE B 1 502 603 1PE 1PE . L 4 SO4 B 1 503 604 SO4 SO4 . M 3 1PE C 1 501 603 1PE 1PE . N 3 1PE C 1 502 604 1PE 1PE . O 2 HEM C 1 503 501 HEM HEM . P 2 HEM D 1 501 501 HEM HEM . Q 5 HOH A 1 601 612 HOH HOH . Q 5 HOH A 2 602 610 HOH HOH . Q 5 HOH A 3 603 611 HOH HOH . Q 5 HOH A 4 604 609 HOH HOH . R 5 HOH B 1 601 606 HOH HOH . R 5 HOH B 2 602 605 HOH HOH . S 5 HOH C 1 601 604 HOH HOH . S 5 HOH C 2 602 603 HOH HOH . T 5 HOH D 1 601 609 HOH HOH . T 5 HOH D 2 602 606 HOH HOH . T 5 HOH D 3 603 605 HOH HOH . T 5 HOH D 4 604 604 HOH HOH . T 5 HOH D 5 605 603 HOH HOH . T 5 HOH D 6 606 607 HOH HOH . T 5 HOH D 7 607 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . M 3 4.461 -41.886 50.86 1 41.58 ? OH2 1PE 501 C 1 HETATM 2 C C12 1PE . . . M 3 5.461 -42.065 51.792 1 43.05 ? C12 1PE 501 C 1 HETATM 3 C C22 1PE . . . M 3 5.527 -43.56 52.096 1 44.81 ? C22 1PE 501 C 1 HETATM 4 O OH3 1PE . . . M 3 6.623 -44.173 51.466 1 45.8 ? OH3 1PE 501 C 1 HETATM 5 C C13 1PE . . . M 3 7.116 -45.106 49.414 1 47.29 ? C13 1PE 501 C 1 HETATM 6 C C23 1PE . . . M 3 6.446 -45.355 50.754 1 46.13 ? C23 1PE 501 C 1 HETATM 7 O OH4 1PE . . . M 3 8.075 -46.08 49.145 1 48.84 ? OH4 1PE 501 C 1 HETATM 8 C C14 1PE . . . M 3 9.649 -45.558 47.357 1 47.63 ? C14 1PE 501 C 1 HETATM 9 C C24 1PE . . . M 3 8.381 -46.304 47.798 1 47.92 ? C24 1PE 501 C 1 HETATM 10 O OH5 1PE . . . M 3 10.769 -46.142 47.98 1 49.44 ? OH5 1PE 501 C 1 HETATM 11 C C15 1PE . . . M 3 13.269 -46.636 48.225 1 51.37 ? C15 1PE 501 C 1 HETATM 12 C C25 1PE . . . M 3 12.1 -45.723 47.691 1 49.26 ? C25 1PE 501 C 1 HETATM 13 O OH6 1PE . . . M 3 13.196 -47.1 49.57 1 52.04 ? OH6 1PE 501 C 1 HETATM 14 C C16 1PE . . . M 3 12.922 -48.995 51.178 1 54.46 ? C16 1PE 501 C 1 HETATM 15 C C26 1PE . . . M 3 13.583 -48.428 49.894 1 54.05 ? C26 1PE 501 C 1 HETATM 16 O OH7 1PE . . . M 3 12.387 -50.271 50.965 1 57.26 ? OH7 1PE 501 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #