data_5OFQ # _model_server_result.job_id HkWEGy7VDYLZeoh9xVnaQQ _model_server_result.datetime_utc '2025-01-10 12:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ofq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":503}' # _entry.id 5OFQ # _exptl.entry_id 5OFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OFQ _cell.length_a 77.125 _cell.length_b 155.534 _cell.length_c 158.151 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Q 1 1 B,J,K,L,R 2 1 C,M,N,O,S 3 1 D,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 351 A CYS 351 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 B SG CYS 351 B CYS 351 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc3 C SG CYS 351 C CYS 351 1_555 O FE HEM . C HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 D SG CYS 351 D CYS 351 1_555 P FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 166 n n CHA C4D HEM doub 167 n n CHA HHA HEM sing 168 n n CHB C4A HEM sing 169 n n CHB C1B HEM doub 170 n n CHB HHB HEM sing 171 n n CHC C4B HEM sing 172 n n CHC C1C HEM doub 173 n n CHC HHC HEM sing 174 n n CHD C4C HEM doub 175 n n CHD C1D HEM sing 176 n n CHD HHD HEM sing 177 n n C1A C2A HEM doub 178 n y C1A NA HEM sing 179 n y C2A C3A HEM sing 180 n y C2A CAA HEM sing 181 n n C3A C4A HEM doub 182 n y C3A CMA HEM sing 183 n n C4A NA HEM sing 184 n y CMA HMA HEM sing 185 n n CMA HMAA HEM sing 186 n n CMA HMAB HEM sing 187 n n CAA CBA HEM sing 188 n n CAA HAA HEM sing 189 n n CAA HAAA HEM sing 190 n n CBA CGA HEM sing 191 n n CBA HBA HEM sing 192 n n CBA HBAA HEM sing 193 n n CGA O1A HEM doub 194 n n CGA O2A HEM sing 195 n n C1B C2B HEM sing 196 n n C1B NB HEM sing 197 n n C2B C3B HEM doub 198 n n C2B CMB HEM sing 199 n n C3B C4B HEM sing 200 n n C3B CAB HEM sing 201 n n C4B NB HEM doub 202 n n CMB HMB HEM sing 203 n n CMB HMBA HEM sing 204 n n CMB HMBB HEM sing 205 n n CAB CBB HEM doub 206 n n CAB HAB HEM sing 207 n n CBB HBB HEM sing 208 n n CBB HBBA HEM sing 209 n n C1C C2C HEM sing 210 n y C1C NC HEM sing 211 n y C2C C3C HEM doub 212 n y C2C CMC HEM sing 213 n n C3C C4C HEM sing 214 n y C3C CAC HEM sing 215 n n C4C NC HEM sing 216 n y CMC HMC HEM sing 217 n n CMC HMCA HEM sing 218 n n CMC HMCB HEM sing 219 n n CAC CBC HEM doub 220 n n CAC HAC HEM sing 221 n n CBC HBC HEM sing 222 n n CBC HBCA HEM sing 223 n n C1D C2D HEM sing 224 n n C1D ND HEM doub 225 n n C2D C3D HEM doub 226 n n C2D CMD HEM sing 227 n n C3D C4D HEM sing 228 n n C3D CAD HEM sing 229 n n C4D ND HEM sing 230 n n CMD HMD HEM sing 231 n n CMD HMDA HEM sing 232 n n CMD HMDB HEM sing 233 n n CAD CBD HEM sing 234 n n CAD HAD HEM sing 235 n n CAD HADA HEM sing 236 n n CBD CGD HEM sing 237 n n CBD HBD HEM sing 238 n n CBD HBDA HEM sing 239 n n CGD O1D HEM doub 240 n n CGD O2D HEM sing 241 n n O2A H2A HEM sing 242 n n O2D H2D HEM sing 243 n n FE NA HEM sing 244 n n FE NB HEM sing 245 n n FE NC HEM sing 246 n n FE ND HEM sing 247 n n # _atom_sites.entry_id 5OFQ _atom_sites.fract_transf_matrix[1][1] 0.012966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 501 HEM HEM . F 3 1PE A 1 502 605 1PE 1PE . G 3 1PE A 1 503 606 1PE 1PE . H 4 SO4 A 1 504 607 SO4 SO4 . I 4 SO4 A 1 505 608 SO4 SO4 . J 2 HEM B 1 501 501 HEM HEM . K 3 1PE B 1 502 603 1PE 1PE . L 4 SO4 B 1 503 604 SO4 SO4 . M 3 1PE C 1 501 603 1PE 1PE . N 3 1PE C 1 502 604 1PE 1PE . O 2 HEM C 1 503 501 HEM HEM . P 2 HEM D 1 501 501 HEM HEM . Q 5 HOH A 1 601 612 HOH HOH . Q 5 HOH A 2 602 610 HOH HOH . Q 5 HOH A 3 603 611 HOH HOH . Q 5 HOH A 4 604 609 HOH HOH . R 5 HOH B 1 601 606 HOH HOH . R 5 HOH B 2 602 605 HOH HOH . S 5 HOH C 1 601 604 HOH HOH . S 5 HOH C 2 602 603 HOH HOH . T 5 HOH D 1 601 609 HOH HOH . T 5 HOH D 2 602 606 HOH HOH . T 5 HOH D 3 603 605 HOH HOH . T 5 HOH D 4 604 604 HOH HOH . T 5 HOH D 5 605 603 HOH HOH . T 5 HOH D 6 606 607 HOH HOH . T 5 HOH D 7 607 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 2 17.888 -31.943 58.931 1 51.05 ? CHA HEM 503 C 1 HETATM 2 C CHB HEM . . . O 2 22.494 -33.428 58.573 1 49.94 ? CHB HEM 503 C 1 HETATM 3 C CHC HEM . . . O 2 23.867 -28.889 57.604 1 47.94 ? CHC HEM 503 C 1 HETATM 4 C CHD HEM . . . O 2 19.408 -27.389 58.539 1 49.04 ? CHD HEM 503 C 1 HETATM 5 C C1A HEM . . . O 2 18.987 -32.771 58.857 1 51.15 ? C1A HEM 503 C 1 HETATM 6 C C2A HEM . . . O 2 18.959 -34.212 58.918 1 50.85 ? C2A HEM 503 C 1 HETATM 7 C C3A HEM . . . O 2 20.224 -34.621 58.787 1 50.7 ? C3A HEM 503 C 1 HETATM 8 C C4A HEM . . . O 2 21.098 -33.461 58.683 1 50.96 ? C4A HEM 503 C 1 HETATM 9 C CMA HEM . . . O 2 20.698 -36.087 58.808 1 49.7 ? CMA HEM 503 C 1 HETATM 10 C CAA HEM . . . O 2 17.667 -35.07 59.033 1 49.35 ? CAA HEM 503 C 1 HETATM 11 C CBA HEM . . . O 2 17.378 -35.544 60.451 1 49.91 ? CBA HEM 503 C 1 HETATM 12 C CGA HEM . . . O 2 16.055 -36.282 60.529 1 47.41 ? CGA HEM 503 C 1 HETATM 13 O O1A HEM . . . O 2 15.614 -36.839 59.502 1 46.82 ? O1A HEM 503 C 1 HETATM 14 O O2A HEM . . . O 2 15.416 -36.337 61.602 1 45.72 ? O2A HEM 503 C 1 HETATM 15 C C1B HEM . . . O 2 23.272 -32.333 58.228 1 49.49 ? C1B HEM 503 C 1 HETATM 16 C C2B HEM . . . O 2 24.647 -32.35 57.779 1 48.57 ? C2B HEM 503 C 1 HETATM 17 C C3B HEM . . . O 2 25.026 -31.081 57.544 1 47.86 ? C3B HEM 503 C 1 HETATM 18 C C4B HEM . . . O 2 23.887 -30.25 57.772 1 48.65 ? C4B HEM 503 C 1 HETATM 19 C CMB HEM . . . O 2 25.475 -33.653 57.695 1 47.3 ? CMB HEM 503 C 1 HETATM 20 C CAB HEM . . . O 2 26.353 -30.467 57.044 1 46.19 ? CAB HEM 503 C 1 HETATM 21 C CBB HEM . . . O 2 27.259 -31.16 56.402 1 45.35 ? CBB HEM 503 C 1 HETATM 22 C C1C HEM . . . O 2 22.767 -28.095 57.705 1 48.36 ? C1C HEM 503 C 1 HETATM 23 C C2C HEM . . . O 2 22.693 -26.709 57.343 1 48.14 ? C2C HEM 503 C 1 HETATM 24 C C3C HEM . . . O 2 21.448 -26.305 57.592 1 48.94 ? C3C HEM 503 C 1 HETATM 25 C C4C HEM . . . O 2 20.719 -27.42 58.141 1 49.06 ? C4C HEM 503 C 1 HETATM 26 C CMC HEM . . . O 2 23.852 -25.891 56.733 1 46.94 ? CMC HEM 503 C 1 HETATM 27 C CAC HEM . . . O 2 20.808 -24.901 57.395 1 47.79 ? CAC HEM 503 C 1 HETATM 28 C CBC HEM . . . O 2 21.502 -23.774 57.348 1 46.43 ? CBC HEM 503 C 1 HETATM 29 C C1D HEM . . . O 2 18.585 -28.468 58.728 1 49.98 ? C1D HEM 503 C 1 HETATM 30 C C2D HEM . . . O 2 17.162 -28.462 58.995 1 49.92 ? C2D HEM 503 C 1 HETATM 31 C C3D HEM . . . O 2 16.737 -29.729 59.111 1 49.53 ? C3D HEM 503 C 1 HETATM 32 C C4D HEM . . . O 2 17.885 -30.577 58.904 1 50.51 ? C4D HEM 503 C 1 HETATM 33 C CMD HEM . . . O 2 16.273 -27.221 59.147 1 47.35 ? CMD HEM 503 C 1 HETATM 34 C CAD HEM . . . O 2 15.287 -30.191 59.406 1 47.42 ? CAD HEM 503 C 1 HETATM 35 C CBD HEM . . . O 2 14.565 -30.59 58.131 1 46.03 ? CBD HEM 503 C 1 HETATM 36 C CGD HEM . . . O 2 13.222 -31.229 58.447 1 43.98 ? CGD HEM 503 C 1 HETATM 37 O O1D HEM . . . O 2 12.34 -31.334 57.561 1 42.97 ? O1D HEM 503 C 1 HETATM 38 O O2D HEM . . . O 2 13.002 -31.676 59.591 1 44 ? O2D HEM 503 C 1 HETATM 39 N NA HEM . . . O 2 20.286 -32.348 58.732 1 51.67 ? NA HEM 503 C 1 HETATM 40 N NB HEM . . . O 2 22.839 -31.031 58.18 1 49.61 ? NB HEM 503 C 1 HETATM 41 N NC HEM . . . O 2 21.558 -28.502 58.2 1 49.12 ? NC HEM 503 C 1 HETATM 42 N ND HEM . . . O 2 18.989 -29.784 58.68 1 50.61 ? ND HEM 503 C 1 HETATM 43 FE FE HEM . . . O 2 20.857 -30.512 58.474 1 49.82 ? FE HEM 503 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #