data_5OG1
#
_model_server_result.job_id            P_aSQF-xkZtQxlYyBmIWjA 
_model_server_result.datetime_utc      '2024-10-20 19:55:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5og1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":902}' 
#
_entry.id    5OG1 
#
_exptl.entry_id    5OG1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     5OG1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 AGS C 1 901 901 AGS AGS . 
H 2 AGS C 1 902 902 AGS AGS . 
I 2 AGS E 1 901 901 AGS AGS . 
J 2 AGS E 1 902 902 AGS AGS . 
K 2 AGS D 1 901 901 AGS AGS . 
L 2 AGS D 1 902 902 AGS AGS . 
M 2 AGS B 1 901 901 AGS AGS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . H 2 188.914 166.941 220.01 1 0 ? PG AGS 902 C 1 
HETATM 2 S S1G AGS . . . H 2 190.563 167.97 219.882 1 0 ? S1G AGS 902 C 1 
HETATM 3 O O2G AGS . . . H 2 187.718 167.869 219.663 1 0 ? O2G AGS 902 C 1 
HETATM 4 O O3G AGS . . . H 2 188.929 165.725 219.044 1 0 ? O3G AGS 902 C 1 
HETATM 5 P PB AGS . . . H 2 188.344 167.506 222.552 1 0 ? PB AGS 902 C 1 
HETATM 6 O O1B AGS . . . H 2 187.305 168.426 221.906 1 0 ? O1B AGS 902 C 1 
HETATM 7 O O2B AGS . . . H 2 189.532 168.223 223.069 1 0 ? O2B AGS 902 C 1 
HETATM 8 O O3B AGS . . . H 2 188.737 166.439 221.465 1 0 ? O3B AGS 902 C 1 
HETATM 9 P PA AGS . . . H 2 186.118 166.283 223.392 1 0 ? PA AGS 902 C 1 
HETATM 10 O O1A AGS . . . H 2 185.998 166.04 221.884 1 0 ? O1A AGS 902 C 1 
HETATM 11 O O2A AGS . . . H 2 185.121 167.23 223.905 1 0 ? O2A AGS 902 C 1 
HETATM 12 O O3A AGS . . . H 2 187.582 166.764 223.696 1 0 ? O3A AGS 902 C 1 
HETATM 13 O O5' AGS . . . H 2 186.021 164.944 224.209 1 0 ? O5' AGS 902 C 1 
HETATM 14 C C5' AGS . . . H 2 186.523 163.698 223.695 1 0 ? C5' AGS 902 C 1 
HETATM 15 C C4' AGS . . . H 2 185.384 162.72 223.746 1 0 ? C4' AGS 902 C 1 
HETATM 16 O O4' AGS . . . H 2 185.33 162.132 225.065 1 0 ? O4' AGS 902 C 1 
HETATM 17 C C3' AGS . . . H 2 184.02 163.361 223.514 1 0 ? C3' AGS 902 C 1 
HETATM 18 O O3' AGS . . . H 2 183.649 163.303 222.142 1 0 ? O3' AGS 902 C 1 
HETATM 19 C C2' AGS . . . H 2 183.102 162.555 224.428 1 0 ? C2' AGS 902 C 1 
HETATM 20 O O2' AGS . . . H 2 182.697 161.346 223.8 1 0 ? O2' AGS 902 C 1 
HETATM 21 C C1' AGS . . . H 2 184.029 162.254 225.605 1 0 ? C1' AGS 902 C 1 
HETATM 22 N N9 AGS . . . H 2 184.055 163.284 226.641 1 0 ? N9 AGS 902 C 1 
HETATM 23 C C8 AGS . . . H 2 185.124 164.066 226.998 1 0 ? C8 AGS 902 C 1 
HETATM 24 N N7 AGS . . . H 2 184.868 164.912 227.963 1 0 ? N7 AGS 902 C 1 
HETATM 25 C C5 AGS . . . H 2 183.539 164.665 228.276 1 0 ? C5 AGS 902 C 1 
HETATM 26 C C6 AGS . . . H 2 182.665 165.232 229.22 1 0 ? C6 AGS 902 C 1 
HETATM 27 N N6 AGS . . . H 2 183.015 166.204 230.065 1 0 ? N6 AGS 902 C 1 
HETATM 28 N N1 AGS . . . H 2 181.4 164.757 229.271 1 0 ? N1 AGS 902 C 1 
HETATM 29 C C2 AGS . . . H 2 181.044 163.783 228.428 1 0 ? C2 AGS 902 C 1 
HETATM 30 N N3 AGS . . . H 2 181.78 163.173 227.495 1 0 ? N3 AGS 902 C 1 
HETATM 31 C C4 AGS . . . H 2 183.031 163.653 227.476 1 0 ? C4 AGS 902 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           31 
#