data_5OG3
#
_model_server_result.job_id            Nc1ctNCo6lSH8iOIjzhxfg 
_model_server_result.datetime_utc      '2025-04-22 03:20:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5og3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5OG3 
#
_exptl.entry_id    5OG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              63.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COPPER (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OG3 
_cell.length_a            96.253 
_cell.length_b            96.253 
_cell.length_c            96.253 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 89 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc2 A NE2 HIS 94 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 A NE2 HIS 129 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc4 A SG CYS 130 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc5 A ND1 HIS 139 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc6 A SD MET 144 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc7 A NE2 HIS 300 A HIS 306 1_555 C CU CU . A CU 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc8 C CU CU . A CU 502 1_555 J N NO2 . A NO2 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc9 C CU CU . A CU 502 1_555 J O1 NO2 . A NO2 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc10 C CU CU . A CU 502 1_555 J O2 NO2 . A NO2 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc11 C CU CU . A CU 502 1_555 K N NO . A NO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc12 C CU CU . A CU 502 1_555 K O NO . A NO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
#
_chem_comp.formula           'Cu 2' 
_chem_comp.formula_weight    63.546 
_chem_comp.id                CU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COPPER (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5OG3 
_atom_sites.fract_transf_matrix[1][1]    0.010389 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010389 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 501 501 CU CU . 
C 2 CU A 1 502 502 CU CU . 
D 3 ACT A 1 503 1 ACT ACT . 
E 4 NO2 A 1 504 1 NO2 NO2 . 
F 4 NO2 A 1 505 2 NO2 NO2 . 
G 4 NO2 A 1 506 3 NO2 NO2 . 
H 4 NO2 A 1 507 4 NO2 NO2 . 
I 4 NO2 A 1 508 5 NO2 NO2 . 
J 4 NO2 A 1 509 6 NO2 NO2 . 
K 5 NO A 1 510 1 NO NO . 
L 6 HOH A 1 601 2112 HOH HOH . 
L 6 HOH A 2 602 2145 HOH HOH . 
L 6 HOH A 3 603 2433 HOH HOH . 
L 6 HOH A 4 604 22 HOH HOH . 
L 6 HOH A 5 605 2326 HOH HOH . 
L 6 HOH A 6 606 2299 HOH HOH . 
L 6 HOH A 7 607 2436 HOH HOH . 
L 6 HOH A 8 608 2241 HOH HOH . 
L 6 HOH A 9 609 2090 HOH HOH . 
L 6 HOH A 10 610 2163 HOH HOH . 
L 6 HOH A 11 611 2386 HOH HOH . 
L 6 HOH A 12 612 12 HOH HOH . 
L 6 HOH A 13 613 2249 HOH HOH . 
L 6 HOH A 14 614 2114 HOH HOH . 
L 6 HOH A 15 615 10 HOH HOH . 
L 6 HOH A 16 616 2022 HOH HOH . 
L 6 HOH A 17 617 2340 HOH HOH . 
L 6 HOH A 18 618 2151 HOH HOH . 
L 6 HOH A 19 619 2 HOH HOH . 
L 6 HOH A 20 620 2335 HOH HOH . 
L 6 HOH A 21 621 2012 HOH HOH . 
L 6 HOH A 22 622 2172 HOH HOH . 
L 6 HOH A 23 623 2397 HOH HOH . 
L 6 HOH A 24 624 2284 HOH HOH . 
L 6 HOH A 25 625 2405 HOH HOH . 
L 6 HOH A 26 626 2276 HOH HOH . 
L 6 HOH A 27 627 2298 HOH HOH . 
L 6 HOH A 28 628 2236 HOH HOH . 
L 6 HOH A 29 629 2339 HOH HOH . 
L 6 HOH A 30 630 2343 HOH HOH . 
L 6 HOH A 31 631 2317 HOH HOH . 
L 6 HOH A 32 632 13 HOH HOH . 
L 6 HOH A 33 633 9 HOH HOH . 
L 6 HOH A 34 634 2324 HOH HOH . 
L 6 HOH A 35 635 2223 HOH HOH . 
L 6 HOH A 36 636 2338 HOH HOH . 
L 6 HOH A 37 637 2283 HOH HOH . 
L 6 HOH A 38 638 2091 HOH HOH . 
L 6 HOH A 39 639 2399 HOH HOH . 
L 6 HOH A 40 640 2417 HOH HOH . 
L 6 HOH A 41 641 2355 HOH HOH . 
L 6 HOH A 42 642 2401 HOH HOH . 
L 6 HOH A 43 643 2365 HOH HOH . 
L 6 HOH A 44 644 2424 HOH HOH . 
L 6 HOH A 45 645 2056 HOH HOH . 
L 6 HOH A 46 646 2400 HOH HOH . 
L 6 HOH A 47 647 2385 HOH HOH . 
L 6 HOH A 48 648 2195 HOH HOH . 
L 6 HOH A 49 649 2073 HOH HOH . 
L 6 HOH A 50 650 2078 HOH HOH . 
L 6 HOH A 51 651 2139 HOH HOH . 
L 6 HOH A 52 652 2313 HOH HOH . 
L 6 HOH A 53 653 2347 HOH HOH . 
L 6 HOH A 54 654 2345 HOH HOH . 
L 6 HOH A 55 655 2168 HOH HOH . 
L 6 HOH A 56 656 2398 HOH HOH . 
L 6 HOH A 57 657 2239 HOH HOH . 
L 6 HOH A 58 658 2384 HOH HOH . 
L 6 HOH A 59 659 2408 HOH HOH . 
L 6 HOH A 60 660 2212 HOH HOH . 
L 6 HOH A 61 661 2143 HOH HOH . 
L 6 HOH A 62 662 2037 HOH HOH . 
L 6 HOH A 63 663 2423 HOH HOH . 
L 6 HOH A 64 664 2219 HOH HOH . 
L 6 HOH A 65 665 2235 HOH HOH . 
L 6 HOH A 66 666 2451 HOH HOH . 
L 6 HOH A 67 667 2140 HOH HOH . 
L 6 HOH A 68 668 2277 HOH HOH . 
L 6 HOH A 69 669 2478 HOH HOH . 
L 6 HOH A 70 670 2337 HOH HOH . 
L 6 HOH A 71 671 2182 HOH HOH . 
L 6 HOH A 72 672 2265 HOH HOH . 
L 6 HOH A 73 673 2427 HOH HOH . 
L 6 HOH A 74 674 2181 HOH HOH . 
L 6 HOH A 75 675 2052 HOH HOH . 
L 6 HOH A 76 676 2446 HOH HOH . 
L 6 HOH A 77 677 2403 HOH HOH . 
L 6 HOH A 78 678 2392 HOH HOH . 
L 6 HOH A 79 679 2279 HOH HOH . 
L 6 HOH A 80 680 2208 HOH HOH . 
L 6 HOH A 81 681 2269 HOH HOH . 
L 6 HOH A 82 682 2428 HOH HOH . 
L 6 HOH A 83 683 2142 HOH HOH . 
L 6 HOH A 84 684 2184 HOH HOH . 
L 6 HOH A 85 685 2087 HOH HOH . 
L 6 HOH A 86 686 2247 HOH HOH . 
L 6 HOH A 87 687 2311 HOH HOH . 
L 6 HOH A 88 688 2371 HOH HOH . 
L 6 HOH A 89 689 2391 HOH HOH . 
L 6 HOH A 90 690 2369 HOH HOH . 
L 6 HOH A 91 691 2452 HOH HOH . 
L 6 HOH A 92 692 2376 HOH HOH . 
L 6 HOH A 93 693 2342 HOH HOH . 
L 6 HOH A 94 694 2410 HOH HOH . 
L 6 HOH A 95 695 2389 HOH HOH . 
L 6 HOH A 96 696 2411 HOH HOH . 
L 6 HOH A 97 697 2220 HOH HOH . 
L 6 HOH A 98 698 2240 HOH HOH . 
L 6 HOH A 99 699 2138 HOH HOH . 
L 6 HOH A 100 700 2449 HOH HOH . 
L 6 HOH A 101 701 2057 HOH HOH . 
L 6 HOH A 102 702 2054 HOH HOH . 
L 6 HOH A 103 703 2468 HOH HOH . 
L 6 HOH A 104 704 2093 HOH HOH . 
L 6 HOH A 105 705 2179 HOH HOH . 
L 6 HOH A 106 706 2280 HOH HOH . 
L 6 HOH A 107 707 2180 HOH HOH . 
L 6 HOH A 108 708 2323 HOH HOH . 
L 6 HOH A 109 709 2020 HOH HOH . 
L 6 HOH A 110 710 2248 HOH HOH . 
L 6 HOH A 111 711 2271 HOH HOH . 
L 6 HOH A 112 712 2302 HOH HOH . 
L 6 HOH A 113 713 2127 HOH HOH . 
L 6 HOH A 114 714 2370 HOH HOH . 
L 6 HOH A 115 715 2482 HOH HOH . 
L 6 HOH A 116 716 2394 HOH HOH . 
L 6 HOH A 117 717 2432 HOH HOH . 
L 6 HOH A 118 718 2230 HOH HOH . 
L 6 HOH A 119 719 2161 HOH HOH . 
L 6 HOH A 120 720 2263 HOH HOH . 
L 6 HOH A 121 721 2048 HOH HOH . 
L 6 HOH A 122 722 2189 HOH HOH . 
L 6 HOH A 123 723 2018 HOH HOH . 
L 6 HOH A 124 724 2378 HOH HOH . 
L 6 HOH A 125 725 2222 HOH HOH . 
L 6 HOH A 126 726 2480 HOH HOH . 
L 6 HOH A 127 727 2233 HOH HOH . 
L 6 HOH A 128 728 2361 HOH HOH . 
L 6 HOH A 129 729 27 HOH HOH . 
L 6 HOH A 130 730 2287 HOH HOH . 
L 6 HOH A 131 731 2104 HOH HOH . 
L 6 HOH A 132 732 2110 HOH HOH . 
L 6 HOH A 133 733 2232 HOH HOH . 
L 6 HOH A 134 734 2301 HOH HOH . 
L 6 HOH A 135 735 2029 HOH HOH . 
L 6 HOH A 136 736 2135 HOH HOH . 
L 6 HOH A 137 737 2034 HOH HOH . 
L 6 HOH A 138 738 2444 HOH HOH . 
L 6 HOH A 139 739 2070 HOH HOH . 
L 6 HOH A 140 740 2409 HOH HOH . 
L 6 HOH A 141 741 2069 HOH HOH . 
L 6 HOH A 142 742 2262 HOH HOH . 
L 6 HOH A 143 743 2268 HOH HOH . 
L 6 HOH A 144 744 2117 HOH HOH . 
L 6 HOH A 145 745 11 HOH HOH . 
L 6 HOH A 146 746 2116 HOH HOH . 
L 6 HOH A 147 747 24 HOH HOH . 
L 6 HOH A 148 748 2412 HOH HOH . 
L 6 HOH A 149 749 2316 HOH HOH . 
L 6 HOH A 150 750 2197 HOH HOH . 
L 6 HOH A 151 751 2270 HOH HOH . 
L 6 HOH A 152 752 2047 HOH HOH . 
L 6 HOH A 153 753 2080 HOH HOH . 
L 6 HOH A 154 754 2132 HOH HOH . 
L 6 HOH A 155 755 2178 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CU 
_atom_site.label_atom_id         CU 
_atom_site.label_comp_id         CU 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -7.869 
_atom_site.Cartn_y               8.088 
_atom_site.Cartn_z               15.961 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.01 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CU 
_atom_site.auth_comp_id          CU 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#