data_5OGB # _model_server_result.job_id xgxDmmlmsx5PDvO8NNVgiw _model_server_result.datetime_utc '2024-10-19 09:19:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ogb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5OGB # _exptl.entry_id 5OGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-(4,4-dimethyl-1-propan-2-yl-quinolin-6-yl)ethynyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.87 _cell.angle_gamma 90 _cell.entry_id 5OGB _cell.length_a 33.05 _cell.length_b 45.58 _cell.length_c 36.67 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H23 N O2' _chem_comp.formula_weight 345.434 _chem_comp.id 9U5 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-(4,4-dimethyl-1-propan-2-yl-quinolin-6-yl)ethynyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C23 9U5 doub 1 n n O2 C23 9U5 sing 2 n n C23 C20 9U5 sing 3 n n C20 C19 9U5 doub 4 n y C20 C21 9U5 sing 5 n y C19 C18 9U5 sing 6 n y C21 C22 9U5 doub 7 n y C18 C17 9U5 doub 8 n y C22 C17 9U5 sing 9 n y C17 C16 9U5 sing 10 n n C16 C15 9U5 trip 11 n n C15 C5 9U5 sing 12 n n C5 C4 9U5 doub 13 n y C5 C6 9U5 sing 14 n y C4 C3 9U5 sing 15 n y C6 C1 9U5 doub 16 n y C3 C2 9U5 doub 17 n y C1 C2 9U5 sing 18 n y C1 C7 9U5 sing 19 n n C2 N1 9U5 sing 20 n n C11 C7 9U5 sing 21 n n C7 C10 9U5 sing 22 n n C7 C8 9U5 sing 23 n n N1 C12 9U5 sing 24 n n N1 C9 9U5 sing 25 n n C12 C14 9U5 sing 26 n n C12 C13 9U5 sing 27 n n C9 C8 9U5 doub 28 n n C4 H1 9U5 sing 29 n n C14 H2 9U5 sing 30 n n C14 H3 9U5 sing 31 n n C14 H4 9U5 sing 32 n n C6 H5 9U5 sing 33 n n C11 H6 9U5 sing 34 n n C11 H7 9U5 sing 35 n n C11 H8 9U5 sing 36 n n C8 H9 9U5 sing 37 n n C9 H10 9U5 sing 38 n n C10 H11 9U5 sing 39 n n C10 H12 9U5 sing 40 n n C10 H13 9U5 sing 41 n n C12 H14 9U5 sing 42 n n C13 H15 9U5 sing 43 n n C13 H16 9U5 sing 44 n n C13 H17 9U5 sing 45 n n C3 H18 9U5 sing 46 n n C18 H19 9U5 sing 47 n n C19 H20 9U5 sing 48 n n C21 H21 9U5 sing 49 n n C22 H22 9U5 sing 50 n n O2 H23 9U5 sing 51 n n # _atom_sites.entry_id 5OGB _atom_sites.fract_transf_matrix[1][1] 0.030257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006913 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9U5 A 1 201 1 9U5 DRG . C 3 HOH A 1 301 50 HOH HOH . C 3 HOH A 2 302 8 HOH HOH . C 3 HOH A 3 303 9 HOH HOH . C 3 HOH A 4 304 19 HOH HOH . C 3 HOH A 5 305 10 HOH HOH . C 3 HOH A 6 306 49 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 25 HOH HOH . C 3 HOH A 9 309 6 HOH HOH . C 3 HOH A 10 310 44 HOH HOH . C 3 HOH A 11 311 22 HOH HOH . C 3 HOH A 12 312 41 HOH HOH . C 3 HOH A 13 313 35 HOH HOH . C 3 HOH A 14 314 11 HOH HOH . C 3 HOH A 15 315 5 HOH HOH . C 3 HOH A 16 316 2 HOH HOH . C 3 HOH A 17 317 62 HOH HOH . C 3 HOH A 18 318 53 HOH HOH . C 3 HOH A 19 319 12 HOH HOH . C 3 HOH A 20 320 34 HOH HOH . C 3 HOH A 21 321 38 HOH HOH . C 3 HOH A 22 322 46 HOH HOH . C 3 HOH A 23 323 58 HOH HOH . C 3 HOH A 24 324 20 HOH HOH . C 3 HOH A 25 325 24 HOH HOH . C 3 HOH A 26 326 52 HOH HOH . C 3 HOH A 27 327 1 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 48 HOH HOH . C 3 HOH A 30 330 37 HOH HOH . C 3 HOH A 31 331 54 HOH HOH . C 3 HOH A 32 332 29 HOH HOH . C 3 HOH A 33 333 13 HOH HOH . C 3 HOH A 34 334 27 HOH HOH . C 3 HOH A 35 335 51 HOH HOH . C 3 HOH A 36 336 45 HOH HOH . C 3 HOH A 37 337 56 HOH HOH . C 3 HOH A 38 338 16 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 3 HOH HOH . C 3 HOH A 41 341 4 HOH HOH . C 3 HOH A 42 342 26 HOH HOH . C 3 HOH A 43 343 33 HOH HOH . C 3 HOH A 44 344 14 HOH HOH . C 3 HOH A 45 345 47 HOH HOH . C 3 HOH A 46 346 36 HOH HOH . C 3 HOH A 47 347 40 HOH HOH . C 3 HOH A 48 348 43 HOH HOH . C 3 HOH A 49 349 23 HOH HOH . C 3 HOH A 50 350 17 HOH HOH . C 3 HOH A 51 351 32 HOH HOH . C 3 HOH A 52 352 15 HOH HOH . C 3 HOH A 53 353 42 HOH HOH . C 3 HOH A 54 354 18 HOH HOH . C 3 HOH A 55 355 21 HOH HOH . C 3 HOH A 56 356 59 HOH HOH . C 3 HOH A 57 357 60 HOH HOH . C 3 HOH A 58 358 30 HOH HOH . C 3 HOH A 59 359 55 HOH HOH . C 3 HOH A 60 360 61 HOH HOH . C 3 HOH A 61 361 31 HOH HOH . C 3 HOH A 62 362 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 9U5 . . . B 2 2.415 -1.088 0.838 1 17.29 ? C4 9U5 201 A 1 HETATM 2 C C14 9U5 . . . B 2 3.286 -5.243 4.042 1 24.24 ? C14 9U5 201 A 1 HETATM 3 C C5 9U5 . . . B 2 1.174 -0.48 0.72 1 18.03 ? C5 9U5 201 A 1 HETATM 4 C C6 9U5 . . . B 2 0.177 -0.766 1.646 1 18.58 ? C6 9U5 201 A 1 HETATM 5 C C11 9U5 . . . B 2 -1.865 -2.559 3.045 1 24.29 ? C11 9U5 201 A 1 HETATM 6 C C7 9U5 . . . B 2 -0.648 -1.92 3.747 1 22.83 ? C7 9U5 201 A 1 HETATM 7 C C8 9U5 . . . B 2 -0.138 -2.82 4.853 1 21.32 ? C8 9U5 201 A 1 HETATM 8 C C9 9U5 . . . B 2 1.076 -3.344 4.852 1 21.17 ? C9 9U5 201 A 1 HETATM 9 C C10 9U5 . . . B 2 -1.098 -0.601 4.408 1 24.37 ? C10 9U5 201 A 1 HETATM 10 C C12 9U5 . . . B 2 3.361 -3.735 4.001 1 22.95 ? C12 9U5 201 A 1 HETATM 11 C C13 9U5 . . . B 2 4.192 -3.161 5.113 1 24.68 ? C13 9U5 201 A 1 HETATM 12 N N1 9U5 . . . B 2 1.987 -3.092 3.902 1 19.73 ? N1 9U5 201 A 1 HETATM 13 C C3 9U5 . . . B 2 2.68 -1.92 1.884 1 18.14 ? C3 9U5 201 A 1 HETATM 14 C C1 9U5 . . . B 2 0.43 -1.629 2.715 1 20.38 ? C1 9U5 201 A 1 HETATM 15 C C2 9U5 . . . B 2 1.691 -2.231 2.814 1 19.66 ? C2 9U5 201 A 1 HETATM 16 C C15 9U5 . . . B 2 0.964 0.308 -0.454 1 17.21 ? C15 9U5 201 A 1 HETATM 17 C C16 9U5 . . . B 2 0.809 0.944 -1.432 1 17.96 ? C16 9U5 201 A 1 HETATM 18 C C17 9U5 . . . B 2 0.683 1.696 -2.645 1 17.01 ? C17 9U5 201 A 1 HETATM 19 C C18 9U5 . . . B 2 1.85 1.993 -3.342 1 16.81 ? C18 9U5 201 A 1 HETATM 20 C C19 9U5 . . . B 2 1.808 2.678 -4.54 1 16.53 ? C19 9U5 201 A 1 HETATM 21 C C20 9U5 . . . B 2 0.584 3.063 -5.078 1 16.57 ? C20 9U5 201 A 1 HETATM 22 C C21 9U5 . . . B 2 -0.596 2.768 -4.39 1 17.79 ? C21 9U5 201 A 1 HETATM 23 C C22 9U5 . . . B 2 -0.554 2.085 -3.182 1 16.87 ? C22 9U5 201 A 1 HETATM 24 C C23 9U5 . . . B 2 0.572 3.776 -6.362 1 17.06 ? C23 9U5 201 A 1 HETATM 25 O O1 9U5 . . . B 2 -0.448 3.686 -7.059 1 16.91 ? O1 9U5 201 A 1 HETATM 26 O O2 9U5 . . . B 2 1.64 4.385 -6.69 1 16.49 ? O2 9U5 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #