data_5OGE # _model_server_result.job_id efumlFcVPJdQb4yl_GMBoQ _model_server_result.datetime_utc '2025-03-06 21:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 5OGE # _exptl.entry_id 5OGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.92 _cell.angle_beta 90.12 _cell.angle_gamma 90.06 _cell.entry_id 5OGE _cell.length_a 45.57 _cell.length_b 102.91 _cell.length_c 181.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,T 1 1 B,M,N 2 1 G 2 2 C 3 1 H 3 2 D,F,O,P,Q,R,S 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 235 n n C10 C9 OLC doub 236 n n C10 C11 OLC sing 237 n n C9 C8 OLC sing 238 n n C17 C16 OLC sing 239 z n C11 C12 OLC sing 240 n n C8 C7 OLC sing 241 n n C24 C22 OLC sing 242 n n C24 O25 OLC sing 243 n n C16 C15 OLC sing 244 n n C12 C13 OLC sing 245 n n C7 C6 OLC sing 246 n n C15 C14 OLC sing 247 n n C13 C14 OLC sing 248 n n C6 C5 OLC sing 249 n n C5 C4 OLC sing 250 n n C4 C3 OLC sing 251 n n C3 C2 OLC sing 252 n n C2 C1 OLC sing 253 n n C21 C22 OLC sing 254 n n C21 O20 OLC sing 255 n n C1 O19 OLC doub 256 n n C1 O20 OLC sing 257 n n C22 O23 OLC sing 258 n n C18 H18 OLC sing 259 n n C18 H18A OLC sing 260 n n C18 H18B OLC sing 261 n n C10 H10 OLC sing 262 n n C9 H9 OLC sing 263 n n C17 H17 OLC sing 264 n n C17 H17A OLC sing 265 n n C11 H11 OLC sing 266 n n C11 H11A OLC sing 267 n n C8 H8 OLC sing 268 n n C8 H8A OLC sing 269 n n C24 H24 OLC sing 270 n n C24 H24A OLC sing 271 n n C16 H16 OLC sing 272 n n C16 H16A OLC sing 273 n n C12 H12 OLC sing 274 n n C12 H12A OLC sing 275 n n C7 H7 OLC sing 276 n n C7 H7A OLC sing 277 n n C15 H15 OLC sing 278 n n C15 H15A OLC sing 279 n n C13 H13 OLC sing 280 n n C13 H13A OLC sing 281 n n C6 H6 OLC sing 282 n n C6 H6A OLC sing 283 n n C14 H14 OLC sing 284 n n C14 H14A OLC sing 285 n n C5 H5 OLC sing 286 n n C5 H5A OLC sing 287 n n C4 H4 OLC sing 288 n n C4 H4A OLC sing 289 n n C3 H3 OLC sing 290 n n C3 H3A OLC sing 291 n n C2 H2 OLC sing 292 n n C2 H2A OLC sing 293 n n C21 H21 OLC sing 294 n n C21 H21A OLC sing 295 n n C22 H22 OLC sing 296 n n O25 HO25 OLC sing 297 n n O23 HO23 OLC sing 298 n n # _atom_sites.entry_id 5OGE _atom_sites.fract_transf_matrix[1][1] 0.021944 _atom_sites.fract_transf_matrix[1][2] 0.000023 _atom_sites.fract_transf_matrix[1][3] 0.000046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009717 _atom_sites.fract_transf_matrix[2][3] -0.000014 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 8 OLC OLC . J 2 OLC A 1 402 9 OLC OLC . K 2 OLC A 1 403 11 OLC OLC . L 2 OLC A 1 404 12 OLC OLC . M 2 OLC B 1 401 6 OLC OLC . N 2 OLC B 1 402 7 OLC OLC . O 2 OLC D 1 401 1 OLC OLC . P 2 OLC D 1 402 2 OLC OLC . Q 2 OLC D 1 403 3 OLC OLC . R 2 OLC D 1 404 4 OLC OLC . S 2 OLC D 1 405 13 OLC OLC . T 2 OLC E 1 401 10 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 2 -27.296 -53.553 26.652 1 151.41 ? C18 OLC 401 A 1 HETATM 2 C C10 OLC . . . I 2 -30.437 -55.983 21.575 1 157.46 ? C10 OLC 401 A 1 HETATM 3 C C9 OLC . . . I 2 -30.232 -56.735 20.495 1 158.86 ? C9 OLC 401 A 1 HETATM 4 C C17 OLC . . . I 2 -28.193 -53.829 27.849 1 150.45 ? C17 OLC 401 A 1 HETATM 5 C C11 OLC . . . I 2 -29.689 -56.076 22.859 1 154.73 ? C11 OLC 401 A 1 HETATM 6 C C8 OLC . . . I 2 -29.219 -57.835 20.373 1 158.56 ? C8 OLC 401 A 1 HETATM 7 C C24 OLC . . . I 2 -31.667 -68.602 17.1 1 155.16 ? C24 OLC 401 A 1 HETATM 8 C C16 OLC . . . I 2 -29.298 -54.841 27.505 1 150.09 ? C16 OLC 401 A 1 HETATM 9 C C12 OLC . . . I 2 -30.175 -57.268 23.711 1 151.91 ? C12 OLC 401 A 1 HETATM 10 C C7 OLC . . . I 2 -29.398 -58.555 19.021 1 160.31 ? C7 OLC 401 A 1 HETATM 11 C C15 OLC . . . I 2 -28.711 -56.238 27.216 1 148.84 ? C15 OLC 401 A 1 HETATM 12 C C13 OLC . . . I 2 -30.156 -56.931 25.217 1 150.86 ? C13 OLC 401 A 1 HETATM 13 C C6 OLC . . . I 2 -30.695 -59.395 18.964 1 160.83 ? C6 OLC 401 A 1 HETATM 14 C C14 OLC . . . I 2 -28.731 -56.581 25.716 1 150.12 ? C14 OLC 401 A 1 HETATM 15 C C5 OLC . . . I 2 -30.89 -59.984 17.551 1 162.46 ? C5 OLC 401 A 1 HETATM 16 C C4 OLC . . . I 2 -30.306 -61.4 17.418 1 161.6 ? C4 OLC 401 A 1 HETATM 17 C C3 OLC . . . I 2 -31.221 -62.463 18.073 1 161.01 ? C3 OLC 401 A 1 HETATM 18 C C2 OLC . . . I 2 -30.572 -63.113 19.312 1 159.77 ? C2 OLC 401 A 1 HETATM 19 C C21 OLC . . . I 2 -31.084 -66.767 18.677 1 156.86 ? C21 OLC 401 A 1 HETATM 20 C C1 OLC . . . I 2 -31.176 -64.468 19.592 1 158.91 ? C1 OLC 401 A 1 HETATM 21 C C22 OLC . . . I 2 -31.49 -67.062 17.209 1 156.9 ? C22 OLC 401 A 1 HETATM 22 O O19 OLC . . . I 2 -31.957 -64.767 20.492 1 158 ? O19 OLC 401 A 1 HETATM 23 O O25 OLC . . . I 2 -31.983 -68.83 15.761 1 156.23 ? O25 OLC 401 A 1 HETATM 24 O O23 OLC . . . I 2 -32.64 -66.371 16.862 1 158 ? O23 OLC 401 A 1 HETATM 25 O O20 OLC . . . I 2 -30.706 -65.387 18.669 1 158.71 ? O20 OLC 401 A 1 HETATM 26 H H18 OLC . . . I 2 -26.706 -54.422 26.365 1 150.36 ? H18 OLC 401 A 1 HETATM 27 H H18A OLC . . . I 2 -26.59 -52.749 26.858 1 152.02 ? H18A OLC 401 A 1 HETATM 28 H H18B OLC . . . I 2 -27.866 -53.254 25.774 1 152.71 ? H18B OLC 401 A 1 HETATM 29 H H10 OLC . . . I 2 -31.213 -55.219 21.562 1 158.74 ? H10 OLC 401 A 1 HETATM 30 H H9 OLC . . . I 2 -30.833 -56.562 19.604 1 160.12 ? H9 OLC 401 A 1 HETATM 31 H H17 OLC . . . I 2 -28.631 -52.897 28.204 1 151.4 ? H17 OLC 401 A 1 HETATM 32 H H17A OLC . . . I 2 -27.589 -54.191 28.679 1 149.11 ? H17A OLC 401 A 1 HETATM 33 H H11 OLC . . . I 2 -28.626 -56.169 22.645 1 154.44 ? H11 OLC 401 A 1 HETATM 34 H H11A OLC . . . I 2 -29.777 -55.147 23.421 1 155.41 ? H11A OLC 401 A 1 HETATM 35 H H8 OLC . . . I 2 -28.22 -57.412 20.457 1 158.58 ? H8 OLC 401 A 1 HETATM 36 H H8A OLC . . . I 2 -29.292 -58.547 21.194 1 157.08 ? H8A OLC 401 A 1 HETATM 37 H H24 OLC . . . I 2 -30.751 -69.108 17.4 1 154.02 ? H24 OLC 401 A 1 HETATM 38 H H24A OLC . . . I 2 -32.447 -68.961 17.769 1 154.45 ? H24A OLC 401 A 1 HETATM 39 H H16 OLC . . . I 2 -30.017 -54.897 28.321 1 149.66 ? H16 OLC 401 A 1 HETATM 40 H H16A OLC . . . I 2 -29.87 -54.473 26.655 1 151.35 ? H16A OLC 401 A 1 HETATM 41 H H12 OLC . . . I 2 -31.179 -57.563 23.409 1 152.17 ? H12 OLC 401 A 1 HETATM 42 H H12A OLC . . . I 2 -29.554 -58.141 23.516 1 150.86 ? H12A OLC 401 A 1 HETATM 43 H H7 OLC . . . I 2 -29.385 -57.819 18.219 1 161.96 ? H7 OLC 401 A 1 HETATM 44 H H7A OLC . . . I 2 -28.536 -59.192 18.83 1 159.48 ? H7A OLC 401 A 1 HETATM 45 H H15 OLC . . . I 2 -27.691 -56.302 27.59 1 148.03 ? H15 OLC 401 A 1 HETATM 46 H H15A OLC . . . I 2 -29.255 -56.995 27.779 1 147.77 ? H15A OLC 401 A 1 HETATM 47 H H13 OLC . . . I 2 -30.847 -56.114 25.417 1 152 ? H13 OLC 401 A 1 HETATM 48 H H13A OLC . . . I 2 -30.551 -57.771 25.786 1 149.64 ? H13A OLC 401 A 1 HETATM 49 H H6 OLC . . . I 2 -30.659 -60.189 19.708 1 159.24 ? H6 OLC 401 A 1 HETATM 50 H H6A OLC . . . I 2 -31.563 -58.798 19.24 1 161.63 ? H6A OLC 401 A 1 HETATM 51 H H14 OLC . . . I 2 -28.311 -55.749 25.154 1 151.44 ? H14 OLC 401 A 1 HETATM 52 H H14A OLC . . . I 2 -28.055 -57.413 25.524 1 149.09 ? H14A OLC 401 A 1 HETATM 53 H H5 OLC . . . I 2 -31.948 -59.987 17.294 1 163.31 ? H5 OLC 401 A 1 HETATM 54 H H5A OLC . . . I 2 -30.436 -59.332 16.806 1 163.81 ? H5A OLC 401 A 1 HETATM 55 H H4 OLC . . . I 2 -30.159 -61.638 16.366 1 162.18 ? H4 OLC 401 A 1 HETATM 56 H H4A OLC . . . I 2 -29.305 -61.424 17.846 1 160.86 ? H4A OLC 401 A 1 HETATM 57 H H3 OLC . . . I 2 -32.175 -62.026 18.362 1 161.7 ? H3 OLC 401 A 1 HETATM 58 H H3A OLC . . . I 2 -31.48 -63.227 17.341 1 160.87 ? H3A OLC 401 A 1 HETATM 59 H H2 OLC . . . I 2 -29.497 -63.237 19.19 1 159.34 ? H2 OLC 401 A 1 HETATM 60 H H2A OLC . . . I 2 -30.687 -62.483 20.193 1 159.77 ? H2A OLC 401 A 1 HETATM 61 H H21 OLC . . . I 2 -31.898 -66.983 19.367 1 156.34 ? H21 OLC 401 A 1 HETATM 62 H H21A OLC . . . I 2 -30.244 -67.389 18.98 1 155.87 ? H21A OLC 401 A 1 HETATM 63 H H22 OLC . . . I 2 -30.748 -66.696 16.501 1 157.59 ? H22 OLC 401 A 1 HETATM 64 H HO25 OLC . . . I 2 -32.671 -69.545 15.745 1 155.74 ? HO25 OLC 401 A 1 HETATM 65 H HO23 OLC . . . I 2 -33.374 -66.649 17.47 1 157.51 ? HO23 OLC 401 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 220 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 46 _model_server_stats.element_count 65 #