data_5OGE
#
_model_server_result.job_id            DlttbwT5FiPsZPEYQpwPDA 
_model_server_result.datetime_utc      '2024-10-15 11:22:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    5OGE 
#
_exptl.entry_id    5OGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.92 
_cell.angle_beta          90.12 
_cell.angle_gamma         90.06 
_cell.entry_id            5OGE 
_cell.length_a            45.57 
_cell.length_b            102.91 
_cell.length_c            181.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,K,L,T 1 1 
B,M,N 2 1 
G 2 2 
C 3 1 
H 3 2 
D,F,O,P,Q,R,S 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 235 n n 
C10 C9 OLC doub 236 n n 
C10 C11 OLC sing 237 n n 
C9 C8 OLC sing 238 n n 
C17 C16 OLC sing 239 z n 
C11 C12 OLC sing 240 n n 
C8 C7 OLC sing 241 n n 
C24 C22 OLC sing 242 n n 
C24 O25 OLC sing 243 n n 
C16 C15 OLC sing 244 n n 
C12 C13 OLC sing 245 n n 
C7 C6 OLC sing 246 n n 
C15 C14 OLC sing 247 n n 
C13 C14 OLC sing 248 n n 
C6 C5 OLC sing 249 n n 
C5 C4 OLC sing 250 n n 
C4 C3 OLC sing 251 n n 
C3 C2 OLC sing 252 n n 
C2 C1 OLC sing 253 n n 
C21 C22 OLC sing 254 n n 
C21 O20 OLC sing 255 n n 
C1 O19 OLC doub 256 n n 
C1 O20 OLC sing 257 n n 
C22 O23 OLC sing 258 n n 
C18 H18 OLC sing 259 n n 
C18 H18A OLC sing 260 n n 
C18 H18B OLC sing 261 n n 
C10 H10 OLC sing 262 n n 
C9 H9 OLC sing 263 n n 
C17 H17 OLC sing 264 n n 
C17 H17A OLC sing 265 n n 
C11 H11 OLC sing 266 n n 
C11 H11A OLC sing 267 n n 
C8 H8 OLC sing 268 n n 
C8 H8A OLC sing 269 n n 
C24 H24 OLC sing 270 n n 
C24 H24A OLC sing 271 n n 
C16 H16 OLC sing 272 n n 
C16 H16A OLC sing 273 n n 
C12 H12 OLC sing 274 n n 
C12 H12A OLC sing 275 n n 
C7 H7 OLC sing 276 n n 
C7 H7A OLC sing 277 n n 
C15 H15 OLC sing 278 n n 
C15 H15A OLC sing 279 n n 
C13 H13 OLC sing 280 n n 
C13 H13A OLC sing 281 n n 
C6 H6 OLC sing 282 n n 
C6 H6A OLC sing 283 n n 
C14 H14 OLC sing 284 n n 
C14 H14A OLC sing 285 n n 
C5 H5 OLC sing 286 n n 
C5 H5A OLC sing 287 n n 
C4 H4 OLC sing 288 n n 
C4 H4A OLC sing 289 n n 
C3 H3 OLC sing 290 n n 
C3 H3A OLC sing 291 n n 
C2 H2 OLC sing 292 n n 
C2 H2A OLC sing 293 n n 
C21 H21 OLC sing 294 n n 
C21 H21A OLC sing 295 n n 
C22 H22 OLC sing 296 n n 
O25 HO25 OLC sing 297 n n 
O23 HO23 OLC sing 298 n n 
#
_atom_sites.entry_id                     5OGE 
_atom_sites.fract_transf_matrix[1][1]    0.021944 
_atom_sites.fract_transf_matrix[1][2]    0.000023 
_atom_sites.fract_transf_matrix[1][3]    0.000046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009717 
_atom_sites.fract_transf_matrix[2][3]    -0.000014 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 401 8 OLC OLC . 
J 2 OLC A 1 402 9 OLC OLC . 
K 2 OLC A 1 403 11 OLC OLC . 
L 2 OLC A 1 404 12 OLC OLC . 
M 2 OLC B 1 401 6 OLC OLC . 
N 2 OLC B 1 402 7 OLC OLC . 
O 2 OLC D 1 401 1 OLC OLC . 
P 2 OLC D 1 402 2 OLC OLC . 
Q 2 OLC D 1 403 3 OLC OLC . 
R 2 OLC D 1 404 4 OLC OLC . 
S 2 OLC D 1 405 13 OLC OLC . 
T 2 OLC E 1 401 10 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . M 2 -47.277 -51.642 151.761 1 84.44 ? C18 OLC 401 B 1 
HETATM 2 C C10 OLC . . . M 2 -45.41 -61.3 152.09 1 97.6 ? C10 OLC 401 B 1 
HETATM 3 C C9 OLC . . . M 2 -45.378 -62.64 151.957 1 99.92 ? C9 OLC 401 B 1 
HETATM 4 C C17 OLC . . . M 2 -47.578 -52.896 150.92 1 84.6 ? C17 OLC 401 B 1 
HETATM 5 C C11 OLC . . . M 2 -46.176 -60.34 151.222 1 94.99 ? C11 OLC 401 B 1 
HETATM 6 C C8 OLC . . . M 2 -46.1 -63.463 150.919 1 101.47 ? C8 OLC 401 B 1 
HETATM 7 C C24 OLC . . . M 2 -41.562 -75.014 149.267 1 126.84 ? C24 OLC 401 B 1 
HETATM 8 C C16 OLC . . . M 2 -47.279 -54.179 151.711 1 84.8 ? C16 OLC 401 B 1 
HETATM 9 C C12 OLC . . . M 2 -45.692 -58.903 151.452 1 92.15 ? C12 OLC 401 B 1 
HETATM 10 C C7 OLC . . . M 2 -45.121 -64.455 150.268 1 103.04 ? C7 OLC 401 B 1 
HETATM 11 C C15 OLC . . . M 2 -47.313 -55.425 150.81 1 86.31 ? C15 OLC 401 B 1 
HETATM 12 C C13 OLC . . . M 2 -46.657 -57.893 150.817 1 90.29 ? C13 OLC 401 B 1 
HETATM 13 C C6 OLC . . . M 2 -44.939 -65.717 151.12 1 105.04 ? C6 OLC 401 B 1 
HETATM 14 C C14 OLC . . . M 2 -46.337 -56.488 151.35 1 88.71 ? C14 OLC 401 B 1 
HETATM 15 C C5 OLC . . . M 2 -44.124 -66.754 150.336 1 107.52 ? C5 OLC 401 B 1 
HETATM 16 C C4 OLC . . . M 2 -44.109 -68.111 151.06 1 109.97 ? C4 OLC 401 B 1 
HETATM 17 C C3 OLC . . . M 2 -44.886 -69.169 150.245 1 112.38 ? C3 OLC 401 B 1 
HETATM 18 C C2 OLC . . . M 2 -45.133 -70.447 151.062 1 115.63 ? C2 OLC 401 B 1 
HETATM 19 C C21 OLC . . . M 2 -42.442 -72.939 150.481 1 125.17 ? C21 OLC 401 B 1 
HETATM 20 C C1 OLC . . . M 2 -43.852 -71.169 151.391 1 119.18 ? C1 OLC 401 B 1 
HETATM 21 C C22 OLC . . . M 2 -42.742 -73.976 149.354 1 126.18 ? C22 OLC 401 B 1 
HETATM 22 O O19 OLC . . . M 2 -43.113 -71.011 152.363 1 118.89 ? O19 OLC 401 B 1 
HETATM 23 O O25 OLC . . . M 2 -41.849 -76.014 150.212 1 127.07 ? O25 OLC 401 B 1 
HETATM 24 O O23 OLC . . . M 2 -44.005 -74.57 149.537 1 126.1 ? O23 OLC 401 B 1 
HETATM 25 O O20 OLC . . . M 2 -43.586 -72.091 150.42 1 122.76 ? O20 OLC 401 B 1 
HETATM 26 H H18 OLC . . . M 2 -46.374 -51.743 152.36 1 84.11 ? H18 OLC 401 B 1 
HETATM 27 H H18A OLC . . . M 2 -47.137 -50.763 151.134 1 84.6 ? H18A OLC 401 B 1 
HETATM 28 H H18B OLC . . . M 2 -48.085 -51.406 152.451 1 84.57 ? H18B OLC 401 B 1 
HETATM 29 H H10 OLC . . . M 2 -44.84 -60.837 152.895 1 97.53 ? H10 OLC 401 B 1 
HETATM 30 H H9 OLC . . . M 2 -44.784 -63.226 152.656 1 100.01 ? H9 OLC 401 B 1 
HETATM 31 H H17 OLC . . . M 2 -48.619 -52.89 150.6 1 84.64 ? H17 OLC 401 B 1 
HETATM 32 H H17A OLC . . . M 2 -47.001 -52.864 149.997 1 84.75 ? H17A OLC 401 B 1 
HETATM 33 H H11 OLC . . . M 2 -46.046 -60.61 150.175 1 95.05 ? H11 OLC 401 B 1 
HETATM 34 H H11A OLC . . . M 2 -47.247 -60.418 151.402 1 95.05 ? H11A OLC 401 B 1 
HETATM 35 H H8 OLC . . . M 2 -46.922 -63.993 151.397 1 101.49 ? H8 OLC 401 B 1 
HETATM 36 H H8A OLC . . . M 2 -46.58 -62.857 150.151 1 101.57 ? H8A OLC 401 B 1 
HETATM 37 H H24 OLC . . . M 2 -41.493 -75.414 148.257 1 126.87 ? H24 OLC 401 B 1 
HETATM 38 H H24A OLC . . . M 2 -40.603 -74.537 149.466 1 126.86 ? H24A OLC 401 B 1 
HETATM 39 H H16 OLC . . . M 2 -46.311 -54.095 152.203 1 84.75 ? H16 OLC 401 B 1 
HETATM 40 H H16A OLC . . . M 2 -47.996 -54.29 152.524 1 84.6 ? H16A OLC 401 B 1 
HETATM 41 H H12 OLC . . . M 2 -45.593 -58.706 152.518 1 92.2 ? H12 OLC 401 B 1 
HETATM 42 H H12A OLC . . . M 2 -44.69 -58.775 151.044 1 91.97 ? H12A OLC 401 B 1 
HETATM 43 H H7 OLC . . . M 2 -45.48 -64.718 149.274 1 103.13 ? H7 OLC 401 B 1 
HETATM 44 H H7A OLC . . . M 2 -44.157 -63.975 150.103 1 102.98 ? H7A OLC 401 B 1 
HETATM 45 H H15 OLC . . . M 2 -48.323 -55.829 150.756 1 86.19 ? H15 OLC 401 B 1 
HETATM 46 H H15A OLC . . . M 2 -47.05 -55.166 149.786 1 86.38 ? H15A OLC 401 B 1 
HETATM 47 H H13 OLC . . . M 2 -46.58 -57.924 149.731 1 90.39 ? H13 OLC 401 B 1 
HETATM 48 H H13A OLC . . . M 2 -47.69 -58.156 151.04 1 90.25 ? H13A OLC 401 B 1 
HETATM 49 H H6 OLC . . . M 2 -44.442 -65.481 152.06 1 104.98 ? H6 OLC 401 B 1 
HETATM 50 H H6A OLC . . . M 2 -45.906 -66.128 151.407 1 105.12 ? H6A OLC 401 B 1 
HETATM 51 H H14 OLC . . . M 2 -45.313 -56.222 151.093 1 88.74 ? H14 OLC 401 B 1 
HETATM 52 H H14A OLC . . . M 2 -46.359 -56.485 152.438 1 88.89 ? H14A OLC 401 B 1 
HETATM 53 H H5 OLC . . . M 2 -44.525 -66.864 149.329 1 107.6 ? H5 OLC 401 B 1 
HETATM 54 H H5A OLC . . . M 2 -43.107 -66.394 150.193 1 107.45 ? H5A OLC 401 B 1 
HETATM 55 H H4 OLC . . . M 2 -43.079 -68.428 151.22 1 110.05 ? H4 OLC 401 B 1 
HETATM 56 H H4A OLC . . . M 2 -44.529 -68.018 152.06 1 109.94 ? H4A OLC 401 B 1 
HETATM 57 H H3 OLC . . . M 2 -45.839 -68.763 149.908 1 112.19 ? H3 OLC 401 B 1 
HETATM 58 H H3A OLC . . . M 2 -44.35 -69.416 149.33 1 112.34 ? H3A OLC 401 B 1 
HETATM 59 H H2 OLC . . . M 2 -45.634 -70.227 152.002 1 115.67 ? H2 OLC 401 B 1 
HETATM 60 H H2A OLC . . . M 2 -45.811 -71.12 150.537 1 115.61 ? H2A OLC 401 B 1 
HETATM 61 H H21 OLC . . . M 2 -42.342 -73.408 151.459 1 125.5 ? H21 OLC 401 B 1 
HETATM 62 H H21A OLC . . . M 2 -41.526 -72.382 150.289 1 125.12 ? H21A OLC 401 B 1 
HETATM 63 H H22 OLC . . . M 2 -42.852 -73.453 148.406 1 126.02 ? H22 OLC 401 B 1 
HETATM 64 H HO25 OLC . . . M 2 -41.915 -76.872 149.716 1 127.24 ? HO25 OLC 401 B 1 
HETATM 65 H HO23 OLC . . . M 2 -43.919 -75.559 149.557 1 126.28 ? HO23 OLC 401 B 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           65 
#