data_5OGE # _model_server_result.job_id cqwEi_lstCeg2jNi-dw8jg _model_server_result.datetime_utc '2024-10-15 11:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":401}' # _entry.id 5OGE # _exptl.entry_id 5OGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.92 _cell.angle_beta 90.12 _cell.angle_gamma 90.06 _cell.entry_id 5OGE _cell.length_a 45.57 _cell.length_b 102.91 _cell.length_c 181.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,T 1 1 B,M,N 2 1 G 2 2 C 3 1 H 3 2 D,F,O,P,Q,R,S 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 235 n n C10 C9 OLC doub 236 n n C10 C11 OLC sing 237 n n C9 C8 OLC sing 238 n n C17 C16 OLC sing 239 z n C11 C12 OLC sing 240 n n C8 C7 OLC sing 241 n n C24 C22 OLC sing 242 n n C24 O25 OLC sing 243 n n C16 C15 OLC sing 244 n n C12 C13 OLC sing 245 n n C7 C6 OLC sing 246 n n C15 C14 OLC sing 247 n n C13 C14 OLC sing 248 n n C6 C5 OLC sing 249 n n C5 C4 OLC sing 250 n n C4 C3 OLC sing 251 n n C3 C2 OLC sing 252 n n C2 C1 OLC sing 253 n n C21 C22 OLC sing 254 n n C21 O20 OLC sing 255 n n C1 O19 OLC doub 256 n n C1 O20 OLC sing 257 n n C22 O23 OLC sing 258 n n C18 H18 OLC sing 259 n n C18 H18A OLC sing 260 n n C18 H18B OLC sing 261 n n C10 H10 OLC sing 262 n n C9 H9 OLC sing 263 n n C17 H17 OLC sing 264 n n C17 H17A OLC sing 265 n n C11 H11 OLC sing 266 n n C11 H11A OLC sing 267 n n C8 H8 OLC sing 268 n n C8 H8A OLC sing 269 n n C24 H24 OLC sing 270 n n C24 H24A OLC sing 271 n n C16 H16 OLC sing 272 n n C16 H16A OLC sing 273 n n C12 H12 OLC sing 274 n n C12 H12A OLC sing 275 n n C7 H7 OLC sing 276 n n C7 H7A OLC sing 277 n n C15 H15 OLC sing 278 n n C15 H15A OLC sing 279 n n C13 H13 OLC sing 280 n n C13 H13A OLC sing 281 n n C6 H6 OLC sing 282 n n C6 H6A OLC sing 283 n n C14 H14 OLC sing 284 n n C14 H14A OLC sing 285 n n C5 H5 OLC sing 286 n n C5 H5A OLC sing 287 n n C4 H4 OLC sing 288 n n C4 H4A OLC sing 289 n n C3 H3 OLC sing 290 n n C3 H3A OLC sing 291 n n C2 H2 OLC sing 292 n n C2 H2A OLC sing 293 n n C21 H21 OLC sing 294 n n C21 H21A OLC sing 295 n n C22 H22 OLC sing 296 n n O25 HO25 OLC sing 297 n n O23 HO23 OLC sing 298 n n # _atom_sites.entry_id 5OGE _atom_sites.fract_transf_matrix[1][1] 0.021944 _atom_sites.fract_transf_matrix[1][2] 0.000023 _atom_sites.fract_transf_matrix[1][3] 0.000046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009717 _atom_sites.fract_transf_matrix[2][3] -0.000014 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 8 OLC OLC . J 2 OLC A 1 402 9 OLC OLC . K 2 OLC A 1 403 11 OLC OLC . L 2 OLC A 1 404 12 OLC OLC . M 2 OLC B 1 401 6 OLC OLC . N 2 OLC B 1 402 7 OLC OLC . O 2 OLC D 1 401 1 OLC OLC . P 2 OLC D 1 402 2 OLC OLC . Q 2 OLC D 1 403 3 OLC OLC . R 2 OLC D 1 404 4 OLC OLC . S 2 OLC D 1 405 13 OLC OLC . T 2 OLC E 1 401 10 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . T 2 -38.765 -56.121 62.397 1 80.39 ? C18 OLC 401 E 1 HETATM 2 C C10 OLC . . . T 2 -41.325 -47.289 60.21 1 82.78 ? C10 OLC 401 E 1 HETATM 3 C C9 OLC . . . T 2 -41.327 -45.975 60.505 1 83.19 ? C9 OLC 401 E 1 HETATM 4 C C17 OLC . . . T 2 -38.602 -54.646 62.049 1 81.87 ? C17 OLC 401 E 1 HETATM 5 C C11 OLC . . . T 2 -40.133 -48.179 59.933 1 82.63 ? C11 OLC 401 E 1 HETATM 6 C C8 OLC . . . T 2 -40.137 -45.079 60.668 1 84.14 ? C8 OLC 401 E 1 HETATM 7 C C24 OLC . . . T 2 -41.719 -34.034 58.391 1 108.54 ? C24 OLC 401 E 1 HETATM 8 C C16 OLC . . . T 2 -39.946 -53.888 62.108 1 82.62 ? C16 OLC 401 E 1 HETATM 9 C C12 OLC . . . T 2 -40.276 -49.538 60.667 1 81.59 ? C12 OLC 401 E 1 HETATM 10 C C7 OLC . . . T 2 -40.439 -44.004 61.741 1 85.87 ? C7 OLC 401 E 1 HETATM 11 C C15 OLC . . . T 2 -39.755 -52.359 61.91 1 82.17 ? C15 OLC 401 E 1 HETATM 12 C C13 OLC . . . T 2 -39.157 -50.518 60.261 1 80.72 ? C13 OLC 401 E 1 HETATM 13 C C6 OLC . . . T 2 -41.201 -42.773 61.209 1 89.36 ? C6 OLC 401 E 1 HETATM 14 C C14 OLC . . . T 2 -39.581 -51.982 60.428 1 81.15 ? C14 OLC 401 E 1 HETATM 15 C C5 OLC . . . T 2 -40.314 -41.921 60.275 1 91.36 ? C5 OLC 401 E 1 HETATM 16 C C4 OLC . . . T 2 -40.76 -40.448 60.202 1 93.58 ? C4 OLC 401 E 1 HETATM 17 C C3 OLC . . . T 2 -42.217 -40.335 59.745 1 95.17 ? C3 OLC 401 E 1 HETATM 18 C C2 OLC . . . T 2 -42.521 -38.938 59.196 1 98.38 ? C2 OLC 401 E 1 HETATM 19 C C21 OLC . . . T 2 -42.306 -35.409 60.417 1 102.71 ? C21 OLC 401 E 1 HETATM 20 C C1 OLC . . . T 2 -42.451 -37.884 60.277 1 100.01 ? C1 OLC 401 E 1 HETATM 21 C C22 OLC . . . T 2 -41.162 -34.63 59.698 1 103.8 ? C22 OLC 401 E 1 HETATM 22 O O19 OLC . . . T 2 -42.454 -38.045 61.502 1 99.21 ? O19 OLC 401 E 1 HETATM 23 O O25 OLC . . . T 2 -40.587 -33.495 57.764 1 110.71 ? O25 OLC 401 E 1 HETATM 24 O O23 OLC . . . T 2 -40.588 -33.67 60.525 1 102.32 ? O23 OLC 401 E 1 HETATM 25 O O20 OLC . . . T 2 -42.386 -36.634 59.681 1 102.13 ? O20 OLC 401 E 1 HETATM 26 H H18 OLC . . . T 2 -37.81 -56.645 62.417 1 79.44 ? H18 OLC 401 E 1 HETATM 27 H H18A OLC . . . T 2 -39.224 -56.257 63.375 1 80.01 ? H18A OLC 401 E 1 HETATM 28 H H18B OLC . . . T 2 -39.393 -56.644 61.678 1 80.54 ? H18B OLC 401 E 1 HETATM 29 H H10 OLC . . . T 2 -42.279 -47.811 60.159 1 82.71 ? H10 OLC 401 E 1 HETATM 30 H H9 OLC . . . T 2 -42.281 -45.469 60.645 1 83.87 ? H9 OLC 401 E 1 HETATM 31 H H17 OLC . . . T 2 -37.886 -54.193 62.733 1 81.65 ? H17 OLC 401 E 1 HETATM 32 H H17A OLC . . . T 2 -38.151 -54.555 61.062 1 82.35 ? H17A OLC 401 E 1 HETATM 33 H H11 OLC . . . T 2 -40.077 -48.341 58.858 1 83.3 ? H11 OLC 401 E 1 HETATM 34 H H11A OLC . . . T 2 -39.184 -47.712 60.189 1 82.6 ? H11A OLC 401 E 1 HETATM 35 H H8 OLC . . . T 2 -39.271 -45.663 60.973 1 82.78 ? H8 OLC 401 E 1 HETATM 36 H H8A OLC . . . T 2 -39.843 -44.627 59.721 1 85.24 ? H8A OLC 401 E 1 HETATM 37 H H24 OLC . . . T 2 -42.196 -34.813 57.798 1 108.26 ? H24 OLC 401 E 1 HETATM 38 H H24A OLC . . . T 2 -42.481 -33.28 58.584 1 110.11 ? H24A OLC 401 E 1 HETATM 39 H H16 OLC . . . T 2 -40.625 -54.286 61.355 1 83.32 ? H16 OLC 401 E 1 HETATM 40 H H16A OLC . . . T 2 -40.439 -54.085 63.059 1 82.06 ? H16A OLC 401 E 1 HETATM 41 H H12 OLC . . . T 2 -40.259 -49.378 61.744 1 80.92 ? H12 OLC 401 E 1 HETATM 42 H H12A OLC . . . T 2 -41.253 -49.972 60.46 1 81.96 ? H12A OLC 401 E 1 HETATM 43 H H7 OLC . . . T 2 -41.004 -44.458 62.554 1 85.03 ? H7 OLC 401 E 1 HETATM 44 H H7A OLC . . . T 2 -39.509 -43.683 62.206 1 85.43 ? H7A OLC 401 E 1 HETATM 45 H H15 OLC . . . T 2 -38.892 -52.014 62.479 1 81.76 ? H15 OLC 401 E 1 HETATM 46 H H15A OLC . . . T 2 -40.602 -51.824 62.337 1 82.7 ? H15A OLC 401 E 1 HETATM 47 H H13 OLC . . . T 2 -38.876 -50.352 59.224 1 81.29 ? H13 OLC 401 E 1 HETATM 48 H H13A OLC . . . T 2 -38.253 -50.32 60.834 1 80.02 ? H13A OLC 401 E 1 HETATM 49 H H6 OLC . . . T 2 -42.102 -43.087 60.684 1 90.08 ? H6 OLC 401 E 1 HETATM 50 H H6A OLC . . . T 2 -41.562 -42.171 62.042 1 89.6 ? H6A OLC 401 E 1 HETATM 51 H H14 OLC . . . T 2 -38.844 -52.629 59.957 1 80.62 ? H14 OLC 401 E 1 HETATM 52 H H14A OLC . . . T 2 -40.504 -52.167 59.882 1 81.61 ? H14A OLC 401 E 1 HETATM 53 H H5 OLC . . . T 2 -39.275 -41.973 60.597 1 90.58 ? H5 OLC 401 E 1 HETATM 54 H H5A OLC . . . T 2 -40.318 -42.352 59.275 1 91.84 ? H5A OLC 401 E 1 HETATM 55 H H4 OLC . . . T 2 -40.619 -39.966 61.168 1 93.37 ? H4 OLC 401 E 1 HETATM 56 H H4A OLC . . . T 2 -40.117 -39.899 59.516 1 94.41 ? H4A OLC 401 E 1 HETATM 57 H H3 OLC . . . T 2 -42.428 -41.079 58.98 1 94.97 ? H3 OLC 401 E 1 HETATM 58 H H3A OLC . . . T 2 -42.898 -40.563 60.564 1 94.53 ? H3A OLC 401 E 1 HETATM 59 H H2 OLC . . . T 2 -41.825 -38.673 58.402 1 98.94 ? H2 OLC 401 E 1 HETATM 60 H H2A OLC . . . T 2 -43.504 -38.911 58.729 1 99.24 ? H2A OLC 401 E 1 HETATM 61 H H21 OLC . . . T 2 -42.09 -35.561 61.473 1 101.57 ? H21 OLC 401 E 1 HETATM 62 H H21A OLC . . . T 2 -43.249 -34.866 60.363 1 104 ? H21A OLC 401 E 1 HETATM 63 H H22 OLC . . . T 2 -40.327 -35.288 59.459 1 102.71 ? H22 OLC 401 E 1 HETATM 64 H HO25 OLC . . . T 2 -40.456 -32.584 58.137 1 111.93 ? HO25 OLC 401 E 1 HETATM 65 H HO23 OLC . . . T 2 -41.304 -33.083 60.884 1 103.24 ? HO23 OLC 401 E 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #