data_5OGE # _model_server_result.job_id ekKJ1YjUNogVg0iY5r5XaA _model_server_result.datetime_utc '2024-10-15 11:22:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 5OGE # _exptl.entry_id 5OGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.92 _cell.angle_beta 90.12 _cell.angle_gamma 90.06 _cell.entry_id 5OGE _cell.length_a 45.57 _cell.length_b 102.91 _cell.length_c 181.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,T 1 1 B,M,N 2 1 G 2 2 C 3 1 H 3 2 D,F,O,P,Q,R,S 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 235 n n C10 C9 OLC doub 236 n n C10 C11 OLC sing 237 n n C9 C8 OLC sing 238 n n C17 C16 OLC sing 239 z n C11 C12 OLC sing 240 n n C8 C7 OLC sing 241 n n C24 C22 OLC sing 242 n n C24 O25 OLC sing 243 n n C16 C15 OLC sing 244 n n C12 C13 OLC sing 245 n n C7 C6 OLC sing 246 n n C15 C14 OLC sing 247 n n C13 C14 OLC sing 248 n n C6 C5 OLC sing 249 n n C5 C4 OLC sing 250 n n C4 C3 OLC sing 251 n n C3 C2 OLC sing 252 n n C2 C1 OLC sing 253 n n C21 C22 OLC sing 254 n n C21 O20 OLC sing 255 n n C1 O19 OLC doub 256 n n C1 O20 OLC sing 257 n n C22 O23 OLC sing 258 n n C18 H18 OLC sing 259 n n C18 H18A OLC sing 260 n n C18 H18B OLC sing 261 n n C10 H10 OLC sing 262 n n C9 H9 OLC sing 263 n n C17 H17 OLC sing 264 n n C17 H17A OLC sing 265 n n C11 H11 OLC sing 266 n n C11 H11A OLC sing 267 n n C8 H8 OLC sing 268 n n C8 H8A OLC sing 269 n n C24 H24 OLC sing 270 n n C24 H24A OLC sing 271 n n C16 H16 OLC sing 272 n n C16 H16A OLC sing 273 n n C12 H12 OLC sing 274 n n C12 H12A OLC sing 275 n n C7 H7 OLC sing 276 n n C7 H7A OLC sing 277 n n C15 H15 OLC sing 278 n n C15 H15A OLC sing 279 n n C13 H13 OLC sing 280 n n C13 H13A OLC sing 281 n n C6 H6 OLC sing 282 n n C6 H6A OLC sing 283 n n C14 H14 OLC sing 284 n n C14 H14A OLC sing 285 n n C5 H5 OLC sing 286 n n C5 H5A OLC sing 287 n n C4 H4 OLC sing 288 n n C4 H4A OLC sing 289 n n C3 H3 OLC sing 290 n n C3 H3A OLC sing 291 n n C2 H2 OLC sing 292 n n C2 H2A OLC sing 293 n n C21 H21 OLC sing 294 n n C21 H21A OLC sing 295 n n C22 H22 OLC sing 296 n n O25 HO25 OLC sing 297 n n O23 HO23 OLC sing 298 n n # _atom_sites.entry_id 5OGE _atom_sites.fract_transf_matrix[1][1] 0.021944 _atom_sites.fract_transf_matrix[1][2] 0.000023 _atom_sites.fract_transf_matrix[1][3] 0.000046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009717 _atom_sites.fract_transf_matrix[2][3] -0.000014 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 8 OLC OLC . J 2 OLC A 1 402 9 OLC OLC . K 2 OLC A 1 403 11 OLC OLC . L 2 OLC A 1 404 12 OLC OLC . M 2 OLC B 1 401 6 OLC OLC . N 2 OLC B 1 402 7 OLC OLC . O 2 OLC D 1 401 1 OLC OLC . P 2 OLC D 1 402 2 OLC OLC . Q 2 OLC D 1 403 3 OLC OLC . R 2 OLC D 1 404 4 OLC OLC . S 2 OLC D 1 405 13 OLC OLC . T 2 OLC E 1 401 10 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 2 -26.969 -53.796 45.085 1 100.78 ? C18 OLC 402 A 1 HETATM 2 C C10 OLC . . . J 2 -29.586 -45.731 49.152 1 106.03 ? C10 OLC 402 A 1 HETATM 3 C C9 OLC . . . J 2 -29.703 -44.396 49.01 1 107.28 ? C9 OLC 402 A 1 HETATM 4 C C17 OLC . . . J 2 -28.104 -53.011 45.733 1 101.79 ? C17 OLC 402 A 1 HETATM 5 C C11 OLC . . . J 2 -28.437 -46.57 48.672 1 105.13 ? C11 OLC 402 A 1 HETATM 6 C C8 OLC . . . J 2 -28.72 -43.483 48.332 1 107.41 ? C8 OLC 402 A 1 HETATM 7 C C24 OLC . . . J 2 -30.547 -31.415 48.911 1 133.81 ? C24 OLC 402 A 1 HETATM 8 C C16 OLC . . . J 2 -27.625 -51.622 46.175 1 102.9 ? C16 OLC 402 A 1 HETATM 9 C C12 OLC . . . J 2 -28.37 -47.898 49.447 1 102.93 ? C12 OLC 402 A 1 HETATM 10 C C7 OLC . . . J 2 -28.959 -42.035 48.787 1 108.07 ? C7 OLC 402 A 1 HETATM 11 C C15 OLC . . . J 2 -28.678 -50.959 47.076 1 103.27 ? C15 OLC 402 A 1 HETATM 12 C C13 OLC . . . J 2 -29.076 -49.036 48.689 1 103.13 ? C13 OLC 402 A 1 HETATM 13 C C6 OLC . . . J 2 -27.781 -41.139 48.374 1 109.57 ? C6 OLC 402 A 1 HETATM 14 C C14 OLC . . . J 2 -28.187 -49.583 47.55 1 103.51 ? C14 OLC 402 A 1 HETATM 15 C C5 OLC . . . J 2 -28.262 -39.758 47.9 1 112.96 ? C5 OLC 402 A 1 HETATM 16 C C4 OLC . . . J 2 -28.674 -38.832 49.066 1 114.27 ? C4 OLC 402 A 1 HETATM 17 C C3 OLC . . . J 2 -27.564 -37.808 49.402 1 115.58 ? C3 OLC 402 A 1 HETATM 18 C C2 OLC . . . J 2 -28.128 -36.633 50.216 1 117.97 ? C2 OLC 402 A 1 HETATM 19 C C21 OLC . . . J 2 -30.537 -33.87 49.475 1 128.75 ? C21 OLC 402 A 1 HETATM 20 C C1 OLC . . . J 2 -28.839 -35.634 49.329 1 122.49 ? C1 OLC 402 A 1 HETATM 21 C C22 OLC . . . J 2 -29.611 -32.617 49.257 1 131.3 ? C22 OLC 402 A 1 HETATM 22 O O19 OLC . . . J 2 -28.692 -35.442 48.119 1 123.9 ? O19 OLC 402 A 1 HETATM 23 O O25 OLC . . . J 2 -29.702 -30.298 48.845 1 134.96 ? O25 OLC 402 A 1 HETATM 24 O O23 OLC . . . J 2 -28.796 -32.343 50.354 1 130.41 ? O23 OLC 402 A 1 HETATM 25 O O20 OLC . . . J 2 -29.729 -34.891 50.076 1 124.97 ? O20 OLC 402 A 1 HETATM 26 H H18 OLC . . . J 2 -26.141 -53.963 45.773 1 99.78 ? H18 OLC 402 A 1 HETATM 27 H H18A OLC . . . J 2 -27.298 -54.777 44.745 1 100.24 ? H18A OLC 402 A 1 HETATM 28 H H18B OLC . . . J 2 -26.558 -53.282 44.217 1 101.73 ? H18B OLC 402 A 1 HETATM 29 H H10 OLC . . . J 2 -30.382 -46.287 49.645 1 105.32 ? H10 OLC 402 A 1 HETATM 30 H H9 OLC . . . J 2 -30.58 -43.893 49.414 1 107.98 ? H9 OLC 402 A 1 HETATM 31 H H17 OLC . . . J 2 -28.938 -52.922 45.039 1 102.76 ? H17 OLC 402 A 1 HETATM 32 H H17A OLC . . . J 2 -28.501 -53.565 46.583 1 100.87 ? H17A OLC 402 A 1 HETATM 33 H H11 OLC . . . J 2 -28.553 -46.747 47.604 1 105.83 ? H11 OLC 402 A 1 HETATM 34 H H11A OLC . . . J 2 -27.486 -46.048 48.764 1 105.35 ? H11A OLC 402 A 1 HETATM 35 H H8 OLC . . . J 2 -27.702 -43.79 48.566 1 106.57 ? H8 OLC 402 A 1 HETATM 36 H H8A OLC . . . J 2 -28.787 -43.556 47.248 1 108.01 ? H8A OLC 402 A 1 HETATM 37 H H24 OLC . . . J 2 -31.064 -31.599 47.971 1 134.89 ? H24 OLC 402 A 1 HETATM 38 H H24A OLC . . . J 2 -31.322 -31.287 49.664 1 133.42 ? H24A OLC 402 A 1 HETATM 39 H H16 OLC . . . J 2 -26.672 -51.7 46.696 1 102.11 ? H16 OLC 402 A 1 HETATM 40 H H16A OLC . . . J 2 -27.421 -50.998 45.305 1 104.07 ? H16A OLC 402 A 1 HETATM 41 H H12 OLC . . . J 2 -27.329 -48.156 49.632 1 102.06 ? H12 OLC 402 A 1 HETATM 42 H H12A OLC . . . J 2 -28.803 -47.784 50.439 1 102.39 ? H12A OLC 402 A 1 HETATM 43 H H7 OLC . . . J 2 -29.899 -41.672 48.374 1 109.07 ? H7 OLC 402 A 1 HETATM 44 H H7A OLC . . . J 2 -29.092 -42.004 49.867 1 107.23 ? H7A OLC 402 A 1 HETATM 45 H H15 OLC . . . J 2 -29.62 -50.856 46.539 1 104.28 ? H15 OLC 402 A 1 HETATM 46 H H15A OLC . . . J 2 -28.904 -51.602 47.926 1 102.1 ? H15A OLC 402 A 1 HETATM 47 H H13 OLC . . . J 2 -29.345 -49.832 49.382 1 101.84 ? H13 OLC 402 A 1 HETATM 48 H H13A OLC . . . J 2 -30.024 -48.681 48.288 1 104.18 ? H13A OLC 402 A 1 HETATM 49 H H6 OLC . . . J 2 -27.088 -41.029 49.207 1 108.66 ? H6 OLC 402 A 1 HETATM 50 H H6A OLC . . . J 2 -27.195 -41.618 47.591 1 109.46 ? H6A OLC 402 A 1 HETATM 51 H H14 OLC . . . J 2 -27.149 -49.653 47.873 1 102.9 ? H14 OLC 402 A 1 HETATM 52 H H14A OLC . . . J 2 -28.174 -48.889 46.711 1 104.66 ? H14A OLC 402 A 1 HETATM 53 H H5 OLC . . . J 2 -27.481 -39.295 47.3 1 113.71 ? H5 OLC 402 A 1 HETATM 54 H H5A OLC . . . J 2 -29.095 -39.875 47.209 1 113.9 ? H5A OLC 402 A 1 HETATM 55 H H4 OLC . . . J 2 -29.607 -38.325 48.823 1 115.49 ? H4 OLC 402 A 1 HETATM 56 H H4A OLC . . . J 2 -28.91 -39.425 49.948 1 112.94 ? H4A OLC 402 A 1 HETATM 57 H H3 OLC . . . J 2 -26.768 -38.291 49.967 1 114.27 ? H3 OLC 402 A 1 HETATM 58 H H3A OLC . . . J 2 -27.076 -37.436 48.503 1 116.46 ? H3A OLC 402 A 1 HETATM 59 H H2 OLC . . . J 2 -28.824 -36.983 50.977 1 117.17 ? H2 OLC 402 A 1 HETATM 60 H H2A OLC . . . J 2 -27.338 -36.127 50.77 1 117.75 ? H2A OLC 402 A 1 HETATM 61 H H21 OLC . . . J 2 -31.384 -33.633 50.117 1 128.99 ? H21 OLC 402 A 1 HETATM 62 H H21A OLC . . . J 2 -30.959 -34.214 48.531 1 129.27 ? H21A OLC 402 A 1 HETATM 63 H H22 OLC . . . J 2 -28.896 -32.788 48.454 1 131.72 ? H22 OLC 402 A 1 HETATM 64 H HO25 OLC . . . J 2 -29.681 -29.898 49.754 1 134.68 ? HO25 OLC 402 A 1 HETATM 65 H HO23 OLC . . . J 2 -28.111 -31.676 50.085 1 131.24 ? HO23 OLC 402 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #