data_5OGE # _model_server_result.job_id lz8TDa-2DwTao6zSBgibJg _model_server_result.datetime_utc '2024-10-15 11:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 5OGE # _exptl.entry_id 5OGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.92 _cell.angle_beta 90.12 _cell.angle_gamma 90.06 _cell.entry_id 5OGE _cell.length_a 45.57 _cell.length_b 102.91 _cell.length_c 181.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,T 1 1 B,M,N 2 1 G 2 2 C 3 1 H 3 2 D,F,O,P,Q,R,S 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 235 n n C10 C9 OLC doub 236 n n C10 C11 OLC sing 237 n n C9 C8 OLC sing 238 n n C17 C16 OLC sing 239 z n C11 C12 OLC sing 240 n n C8 C7 OLC sing 241 n n C24 C22 OLC sing 242 n n C24 O25 OLC sing 243 n n C16 C15 OLC sing 244 n n C12 C13 OLC sing 245 n n C7 C6 OLC sing 246 n n C15 C14 OLC sing 247 n n C13 C14 OLC sing 248 n n C6 C5 OLC sing 249 n n C5 C4 OLC sing 250 n n C4 C3 OLC sing 251 n n C3 C2 OLC sing 252 n n C2 C1 OLC sing 253 n n C21 C22 OLC sing 254 n n C21 O20 OLC sing 255 n n C1 O19 OLC doub 256 n n C1 O20 OLC sing 257 n n C22 O23 OLC sing 258 n n C18 H18 OLC sing 259 n n C18 H18A OLC sing 260 n n C18 H18B OLC sing 261 n n C10 H10 OLC sing 262 n n C9 H9 OLC sing 263 n n C17 H17 OLC sing 264 n n C17 H17A OLC sing 265 n n C11 H11 OLC sing 266 n n C11 H11A OLC sing 267 n n C8 H8 OLC sing 268 n n C8 H8A OLC sing 269 n n C24 H24 OLC sing 270 n n C24 H24A OLC sing 271 n n C16 H16 OLC sing 272 n n C16 H16A OLC sing 273 n n C12 H12 OLC sing 274 n n C12 H12A OLC sing 275 n n C7 H7 OLC sing 276 n n C7 H7A OLC sing 277 n n C15 H15 OLC sing 278 n n C15 H15A OLC sing 279 n n C13 H13 OLC sing 280 n n C13 H13A OLC sing 281 n n C6 H6 OLC sing 282 n n C6 H6A OLC sing 283 n n C14 H14 OLC sing 284 n n C14 H14A OLC sing 285 n n C5 H5 OLC sing 286 n n C5 H5A OLC sing 287 n n C4 H4 OLC sing 288 n n C4 H4A OLC sing 289 n n C3 H3 OLC sing 290 n n C3 H3A OLC sing 291 n n C2 H2 OLC sing 292 n n C2 H2A OLC sing 293 n n C21 H21 OLC sing 294 n n C21 H21A OLC sing 295 n n C22 H22 OLC sing 296 n n O25 HO25 OLC sing 297 n n O23 HO23 OLC sing 298 n n # _atom_sites.entry_id 5OGE _atom_sites.fract_transf_matrix[1][1] 0.021944 _atom_sites.fract_transf_matrix[1][2] 0.000023 _atom_sites.fract_transf_matrix[1][3] 0.000046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009717 _atom_sites.fract_transf_matrix[2][3] -0.000014 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 8 OLC OLC . J 2 OLC A 1 402 9 OLC OLC . K 2 OLC A 1 403 11 OLC OLC . L 2 OLC A 1 404 12 OLC OLC . M 2 OLC B 1 401 6 OLC OLC . N 2 OLC B 1 402 7 OLC OLC . O 2 OLC D 1 401 1 OLC OLC . P 2 OLC D 1 402 2 OLC OLC . Q 2 OLC D 1 403 3 OLC OLC . R 2 OLC D 1 404 4 OLC OLC . S 2 OLC D 1 405 13 OLC OLC . T 2 OLC E 1 401 10 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . K 2 -64.639 -63.72 49.642 1 67.82 ? C18 OLC 403 A 1 HETATM 2 C C10 OLC . . . K 2 -64.803 -56.189 44.184 1 101.6 ? C10 OLC 403 A 1 HETATM 3 C C9 OLC . . . K 2 -65.099 -54.893 44.165 1 106.54 ? C9 OLC 403 A 1 HETATM 4 C C17 OLC . . . K 2 -65.218 -62.408 49.132 1 71.11 ? C17 OLC 403 A 1 HETATM 5 C C11 OLC . . . K 2 -63.578 -56.796 44.78 1 95.91 ? C11 OLC 403 A 1 HETATM 6 C C8 OLC . . . K 2 -64.246 -53.767 44.681 1 109.27 ? C8 OLC 403 A 1 HETATM 7 C C24 OLC . . . K 2 -66.523 -44.625 42.765 1 141.13 ? C24 OLC 403 A 1 HETATM 8 C C16 OLC . . . K 2 -64.759 -62.148 47.699 1 73.95 ? C16 OLC 403 A 1 HETATM 9 C C12 OLC . . . K 2 -63.64 -58.332 44.684 1 91.36 ? C12 OLC 403 A 1 HETATM 10 C C7 OLC . . . K 2 -64.152 -52.687 43.581 1 114.3 ? C7 OLC 403 A 1 HETATM 11 C C15 OLC . . . K 2 -65.258 -60.777 47.217 1 78.13 ? C15 OLC 403 A 1 HETATM 12 C C13 OLC . . . K 2 -64.777 -58.903 45.567 1 87.76 ? C13 OLC 403 A 1 HETATM 13 C C6 OLC . . . K 2 -64.383 -51.273 44.128 1 117.71 ? C6 OLC 403 A 1 HETATM 14 C C14 OLC . . . K 2 -64.538 -60.384 45.917 1 82.43 ? C14 OLC 403 A 1 HETATM 15 C C5 OLC . . . K 2 -63.913 -50.255 43.073 1 121.82 ? C5 OLC 403 A 1 HETATM 16 C C4 OLC . . . K 2 -64.672 -48.916 43.147 1 126.14 ? C4 OLC 403 A 1 HETATM 17 C C3 OLC . . . K 2 -63.692 -47.738 42.992 1 129.53 ? C3 OLC 403 A 1 HETATM 18 C C2 OLC . . . K 2 -63.046 -47.388 44.358 1 130.35 ? C2 OLC 403 A 1 HETATM 19 C C21 OLC . . . K 2 -65.642 -44.745 45.202 1 137.93 ? C21 OLC 403 A 1 HETATM 20 C C1 OLC . . . K 2 -63.608 -46.127 45.004 1 133.75 ? C1 OLC 403 A 1 HETATM 21 C C22 OLC . . . K 2 -66.905 -44.511 44.284 1 140.1 ? C22 OLC 403 A 1 HETATM 22 O O19 OLC . . . K 2 -62.991 -45.375 45.753 1 134.27 ? O19 OLC 403 A 1 HETATM 23 O O25 OLC . . . K 2 -65.408 -43.796 42.582 1 141.43 ? O25 OLC 403 A 1 HETATM 24 O O23 OLC . . . K 2 -67.949 -45.369 44.619 1 139.38 ? O23 OLC 403 A 1 HETATM 25 O O20 OLC . . . K 2 -64.944 -45.891 44.691 1 136.03 ? O20 OLC 403 A 1 HETATM 26 H H18 OLC . . . K 2 -63.575 -63.811 49.432 1 67.21 ? H18 OLC 403 A 1 HETATM 27 H H18A OLC . . . K 2 -64.75 -63.82 50.72 1 66.74 ? H18A OLC 403 A 1 HETATM 28 H H18B OLC . . . K 2 -65.126 -64.584 49.193 1 67.63 ? H18B OLC 403 A 1 HETATM 29 H H10 OLC . . . K 2 -65.486 -56.894 43.712 1 101.79 ? H10 OLC 403 A 1 HETATM 30 H H9 OLC . . . K 2 -66.058 -54.58 43.756 1 107.95 ? H9 OLC 403 A 1 HETATM 31 H H17 OLC . . . K 2 -66.306 -62.432 49.186 1 71.74 ? H17 OLC 403 A 1 HETATM 32 H H17A OLC . . . K 2 -64.919 -61.591 49.786 1 71.22 ? H17A OLC 403 A 1 HETATM 33 H H11 OLC . . . K 2 -62.701 -56.415 44.258 1 96.28 ? H11 OLC 403 A 1 HETATM 34 H H11A OLC . . . K 2 -63.442 -56.483 45.814 1 95.15 ? H11A OLC 403 A 1 HETATM 35 H H8 OLC . . . K 2 -64.69 -53.364 45.591 1 109.07 ? H8 OLC 403 A 1 HETATM 36 H H8A OLC . . . K 2 -63.251 -54.091 44.981 1 107.84 ? H8A OLC 403 A 1 HETATM 37 H H24 OLC . . . K 2 -66.323 -45.661 42.496 1 139.92 ? H24 OLC 403 A 1 HETATM 38 H H24A OLC . . . K 2 -67.354 -44.313 42.135 1 142.91 ? H24A OLC 403 A 1 HETATM 39 H H16 OLC . . . K 2 -63.673 -62.208 47.643 1 73.13 ? H16 OLC 403 A 1 HETATM 40 H H16A OLC . . . K 2 -65.118 -62.936 47.039 1 74.07 ? H16A OLC 403 A 1 HETATM 41 H H12 OLC . . . K 2 -63.785 -58.63 43.647 1 91.98 ? H12 OLC 403 A 1 HETATM 42 H H12A OLC . . . K 2 -62.676 -58.751 44.966 1 90.13 ? H12A OLC 403 A 1 HETATM 43 H H7 OLC . . . K 2 -63.185 -52.746 43.085 1 114.21 ? H7 OLC 403 A 1 HETATM 44 H H7A OLC . . . K 2 -64.871 -52.88 42.786 1 115.3 ? H7A OLC 403 A 1 HETATM 45 H H15 OLC . . . K 2 -66.334 -60.803 47.057 1 78.9 ? H15 OLC 403 A 1 HETATM 46 H H15A OLC . . . K 2 -65.103 -60.027 47.991 1 77.88 ? H15A OLC 403 A 1 HETATM 47 H H13 OLC . . . K 2 -64.887 -58.303 46.469 1 87.67 ? H13 OLC 403 A 1 HETATM 48 H H13A OLC . . . K 2 -65.731 -58.803 45.053 1 89.03 ? H13A OLC 403 A 1 HETATM 49 H H6 OLC . . . K 2 -65.434 -51.126 44.373 1 118.29 ? H6 OLC 403 A 1 HETATM 50 H H6A OLC . . . K 2 -63.848 -51.133 45.067 1 116.49 ? H6A OLC 403 A 1 HETATM 51 H H14 OLC . . . K 2 -63.472 -60.591 46.002 1 81.48 ? H14 OLC 403 A 1 HETATM 52 H H14A OLC . . . K 2 -64.882 -61.02 45.102 1 82.68 ? H14A OLC 403 A 1 HETATM 53 H H5 OLC . . . K 2 -62.842 -50.095 43.19 1 121.21 ? H5 OLC 403 A 1 HETATM 54 H H5A OLC . . . K 2 -64.021 -50.678 42.075 1 122.28 ? H5A OLC 403 A 1 HETATM 55 H H4 OLC . . . K 2 -65.436 -48.876 42.371 1 127.49 ? H4 OLC 403 A 1 HETATM 56 H H4A OLC . . . K 2 -65.221 -48.833 44.084 1 125.75 ? H4A OLC 403 A 1 HETATM 57 H H3 OLC . . . K 2 -62.912 -47.986 42.274 1 129.43 ? H3 OLC 403 A 1 HETATM 58 H H3A OLC . . . K 2 -64.19 -46.875 42.553 1 131.47 ? H3A OLC 403 A 1 HETATM 59 H H2 OLC . . . K 2 -63.152 -48.21 45.064 1 128.68 ? H2 OLC 403 A 1 HETATM 60 H H2A OLC . . . K 2 -61.97 -47.267 44.244 1 129.74 ? H2A OLC 403 A 1 HETATM 61 H H21 OLC . . . K 2 -65.004 -43.863 45.217 1 138.53 ? H21 OLC 403 A 1 HETATM 62 H H21A OLC . . . K 2 -65.946 -44.92 46.233 1 137.09 ? H21A OLC 403 A 1 HETATM 63 H H22 OLC . . . K 2 -67.337 -43.531 44.479 1 141.62 ? H22 OLC 403 A 1 HETATM 64 H HO25 OLC . . . K 2 -65.75 -42.869 42.486 1 143.15 ? HO25 OLC 403 A 1 HETATM 65 H HO23 OLC . . . K 2 -68.527 -44.935 45.301 1 139.74 ? HO23 OLC 403 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 65 #