data_5OGE
#
_model_server_result.job_id            B8vAS1akUk4E7iUZLk0yAA 
_model_server_result.datetime_utc      '2025-03-06 21:31:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":403}' 
#
_entry.id    5OGE 
#
_exptl.entry_id    5OGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.92 
_cell.angle_beta          90.12 
_cell.angle_gamma         90.06 
_cell.entry_id            5OGE 
_cell.length_a            45.57 
_cell.length_b            102.91 
_cell.length_c            181.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,K,L,T 1 1 
B,M,N 2 1 
G 2 2 
C 3 1 
H 3 2 
D,F,O,P,Q,R,S 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 235 n n 
C10 C9 OLC doub 236 n n 
C10 C11 OLC sing 237 n n 
C9 C8 OLC sing 238 n n 
C17 C16 OLC sing 239 z n 
C11 C12 OLC sing 240 n n 
C8 C7 OLC sing 241 n n 
C24 C22 OLC sing 242 n n 
C24 O25 OLC sing 243 n n 
C16 C15 OLC sing 244 n n 
C12 C13 OLC sing 245 n n 
C7 C6 OLC sing 246 n n 
C15 C14 OLC sing 247 n n 
C13 C14 OLC sing 248 n n 
C6 C5 OLC sing 249 n n 
C5 C4 OLC sing 250 n n 
C4 C3 OLC sing 251 n n 
C3 C2 OLC sing 252 n n 
C2 C1 OLC sing 253 n n 
C21 C22 OLC sing 254 n n 
C21 O20 OLC sing 255 n n 
C1 O19 OLC doub 256 n n 
C1 O20 OLC sing 257 n n 
C22 O23 OLC sing 258 n n 
C18 H18 OLC sing 259 n n 
C18 H18A OLC sing 260 n n 
C18 H18B OLC sing 261 n n 
C10 H10 OLC sing 262 n n 
C9 H9 OLC sing 263 n n 
C17 H17 OLC sing 264 n n 
C17 H17A OLC sing 265 n n 
C11 H11 OLC sing 266 n n 
C11 H11A OLC sing 267 n n 
C8 H8 OLC sing 268 n n 
C8 H8A OLC sing 269 n n 
C24 H24 OLC sing 270 n n 
C24 H24A OLC sing 271 n n 
C16 H16 OLC sing 272 n n 
C16 H16A OLC sing 273 n n 
C12 H12 OLC sing 274 n n 
C12 H12A OLC sing 275 n n 
C7 H7 OLC sing 276 n n 
C7 H7A OLC sing 277 n n 
C15 H15 OLC sing 278 n n 
C15 H15A OLC sing 279 n n 
C13 H13 OLC sing 280 n n 
C13 H13A OLC sing 281 n n 
C6 H6 OLC sing 282 n n 
C6 H6A OLC sing 283 n n 
C14 H14 OLC sing 284 n n 
C14 H14A OLC sing 285 n n 
C5 H5 OLC sing 286 n n 
C5 H5A OLC sing 287 n n 
C4 H4 OLC sing 288 n n 
C4 H4A OLC sing 289 n n 
C3 H3 OLC sing 290 n n 
C3 H3A OLC sing 291 n n 
C2 H2 OLC sing 292 n n 
C2 H2A OLC sing 293 n n 
C21 H21 OLC sing 294 n n 
C21 H21A OLC sing 295 n n 
C22 H22 OLC sing 296 n n 
O25 HO25 OLC sing 297 n n 
O23 HO23 OLC sing 298 n n 
#
_atom_sites.entry_id                     5OGE 
_atom_sites.fract_transf_matrix[1][1]    0.021944 
_atom_sites.fract_transf_matrix[1][2]    0.000023 
_atom_sites.fract_transf_matrix[1][3]    0.000046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009717 
_atom_sites.fract_transf_matrix[2][3]    -0.000014 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 401 8 OLC OLC . 
J 2 OLC A 1 402 9 OLC OLC . 
K 2 OLC A 1 403 11 OLC OLC . 
L 2 OLC A 1 404 12 OLC OLC . 
M 2 OLC B 1 401 6 OLC OLC . 
N 2 OLC B 1 402 7 OLC OLC . 
O 2 OLC D 1 401 1 OLC OLC . 
P 2 OLC D 1 402 2 OLC OLC . 
Q 2 OLC D 1 403 3 OLC OLC . 
R 2 OLC D 1 404 4 OLC OLC . 
S 2 OLC D 1 405 13 OLC OLC . 
T 2 OLC E 1 401 10 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . Q 2 -33.147 -98.016 170.332 1 141.35 ? C18 OLC 403 D 1 
HETATM 2 C C10 OLC . . . Q 2 -27.407 -99.845 169.086 1 151.2 ? C10 OLC 403 D 1 
HETATM 3 C C9 OLC . . . Q 2 -27.663 -100.222 167.826 1 151.52 ? C9 OLC 403 D 1 
HETATM 4 C C17 OLC . . . Q 2 -32.896 -98.079 171.835 1 142.76 ? C17 OLC 403 D 1 
HETATM 5 C C11 OLC . . . Q 2 -26.611 -98.644 169.514 1 149.99 ? C11 OLC 403 D 1 
HETATM 6 C C8 OLC . . . Q 2 -27.191 -99.529 166.585 1 151.7 ? C8 OLC 403 D 1 
HETATM 7 C C24 OLC . . . Q 2 -25.498 -91.082 158.266 1 158.34 ? C24 OLC 403 D 1 
HETATM 8 C C16 OLC . . . Q 2 -31.483 -98.599 172.14 1 144.77 ? C16 OLC 403 D 1 
HETATM 9 C C12 OLC . . . Q 2 -27.447 -97.352 169.391 1 147.75 ? C12 OLC 403 D 1 
HETATM 10 C C7 OLC . . . Q 2 -28.334 -99.48 165.552 1 151.98 ? C7 OLC 403 D 1 
HETATM 11 C C15 OLC . . . Q 2 -30.413 -97.52 171.863 1 145.12 ? C15 OLC 403 D 1 
HETATM 12 C C13 OLC . . . Q 2 -28.224 -97.029 170.686 1 146.76 ? C13 OLC 403 D 1 
HETATM 13 C C6 OLC . . . Q 2 -27.858 -98.906 164.206 1 152.42 ? C6 OLC 403 D 1 
HETATM 14 C C14 OLC . . . Q 2 -29.315 -98.074 170.951 1 146.43 ? C14 OLC 403 D 1 
HETATM 15 C C5 OLC . . . Q 2 -27.8 -97.372 164.284 1 153 ? C5 OLC 403 D 1 
HETATM 16 C C4 OLC . . . Q 2 -27.078 -96.75 163.08 1 153.88 ? C4 OLC 403 D 1 
HETATM 17 C C3 OLC . . . Q 2 -26.485 -95.4 163.506 1 155.3 ? C3 OLC 403 D 1 
HETATM 18 C C2 OLC . . . Q 2 -26.268 -94.484 162.299 1 156.41 ? C2 OLC 403 D 1 
HETATM 19 C C21 OLC . . . Q 2 -25.92 -92.336 160.418 1 158.97 ? C21 OLC 403 D 1 
HETATM 20 C C1 OLC . . . Q 2 -25.732 -93.135 162.771 1 157.95 ? C1 OLC 403 D 1 
HETATM 21 C C22 OLC . . . Q 2 -25.67 -90.926 159.806 1 158.85 ? C22 OLC 403 D 1 
HETATM 22 O O19 OLC . . . Q 2 -25.385 -92.84 163.908 1 158.5 ? O19 OLC 403 D 1 
HETATM 23 O O25 OLC . . . Q 2 -24.226 -91.648 158.087 1 158.75 ? O25 OLC 403 D 1 
HETATM 24 O O23 OLC . . . Q 2 -26.716 -90.064 160.122 1 158.57 ? O23 OLC 403 D 1 
HETATM 25 O O20 OLC . . . Q 2 -25.61 -92.153 161.8 1 158.46 ? O20 OLC 403 D 1 
HETATM 26 H H18 OLC . . . Q 2 -32.463 -97.338 169.824 1 140.67 ? H18 OLC 403 D 1 
HETATM 27 H H18A OLC . . . Q 2 -33.03 -98.992 169.864 1 141.89 ? H18A OLC 403 D 1 
HETATM 28 H H18B OLC . . . Q 2 -34.157 -97.677 170.102 1 140.7 ? H18B OLC 403 D 1 
HETATM 29 H H10 OLC . . . Q 2 -27.787 -100.447 169.911 1 152.07 ? H10 OLC 403 D 1 
HETATM 30 H H9 OLC . . . Q 2 -28.266 -101.11 167.645 1 151.92 ? H9 OLC 403 D 1 
HETATM 31 H H17 OLC . . . Q 2 -33.043 -97.095 172.279 1 142.12 ? H17 OLC 403 D 1 
HETATM 32 H H17A OLC . . . Q 2 -33.643 -98.715 172.307 1 143.22 ? H17A OLC 403 D 1 
HETATM 33 H H11 OLC . . . Q 2 -26.278 -98.784 170.541 1 150.77 ? H11 OLC 403 D 1 
HETATM 34 H H11A OLC . . . Q 2 -25.692 -98.553 168.937 1 149.93 ? H11A OLC 403 D 1 
HETATM 35 H H8 OLC . . . Q 2 -26.333 -100.066 166.183 1 152.26 ? H8 OLC 403 D 1 
HETATM 36 H H8A OLC . . . Q 2 -26.815 -98.529 166.792 1 151.13 ? H8A OLC 403 D 1 
HETATM 37 H H24 OLC . . . Q 2 -26.295 -91.706 157.865 1 158.37 ? H24 OLC 403 D 1 
HETATM 38 H H24A OLC . . . Q 2 -25.585 -90.121 157.761 1 157.63 ? H24A OLC 403 D 1 
HETATM 39 H H16 OLC . . . Q 2 -31.424 -98.927 173.177 1 145.58 ? H16 OLC 403 D 1 
HETATM 40 H H16A OLC . . . Q 2 -31.288 -99.496 171.555 1 145.23 ? H16A OLC 403 D 1 
HETATM 41 H H12 OLC . . . Q 2 -26.793 -96.52 169.135 1 147.19 ? H12 OLC 403 D 1 
HETATM 42 H H12A OLC . . . Q 2 -28.136 -97.434 168.552 1 147.26 ? H12A OLC 403 D 1 
HETATM 43 H H7 OLC . . . Q 2 -28.745 -100.478 165.408 1 152.6 ? H7 OLC 403 D 1 
HETATM 44 H H7A OLC . . . Q 2 -29.159 -98.884 165.94 1 151.36 ? H7A OLC 403 D 1 
HETATM 45 H H15 OLC . . . Q 2 -30.859 -96.633 171.414 1 144.06 ? H15 OLC 403 D 1 
HETATM 46 H H15A OLC . . . Q 2 -29.98 -97.173 172.8 1 145.43 ? H15A OLC 403 D 1 
HETATM 47 H H13 OLC . . . Q 2 -27.538 -96.978 171.53 1 147.37 ? H13 OLC 403 D 1 
HETATM 48 H H13A OLC . . . Q 2 -28.664 -96.035 170.62 1 145.76 ? H13A OLC 403 D 1 
HETATM 49 H H6 OLC . . . Q 2 -26.884 -99.316 163.943 1 152.92 ? H6 OLC 403 D 1 
HETATM 50 H H6A OLC . . . Q 2 -28.522 -99.223 163.403 1 152.06 ? H6A OLC 403 D 1 
HETATM 51 H H14 OLC . . . Q 2 -28.877 -98.964 171.401 1 147.55 ? H14 OLC 403 D 1 
HETATM 52 H H14A OLC . . . Q 2 -29.748 -98.416 170.012 1 146.16 ? H14A OLC 403 D 1 
HETATM 53 H H5 OLC . . . Q 2 -28.811 -96.974 164.346 1 152.46 ? H5 OLC 403 D 1 
HETATM 54 H H5A OLC . . . Q 2 -27.322 -97.053 165.208 1 153.37 ? H5A OLC 403 D 1 
HETATM 55 H H4 OLC . . . Q 2 -26.297 -97.412 162.709 1 154.42 ? H4 OLC 403 D 1 
HETATM 56 H H4A OLC . . . Q 2 -27.767 -96.624 162.247 1 153.14 ? H4A OLC 403 D 1 
HETATM 57 H H3 OLC . . . Q 2 -27.132 -94.903 164.227 1 155 ? H3 OLC 403 D 1 
HETATM 58 H H3A OLC . . . Q 2 -25.542 -95.548 164.03 1 156.02 ? H3A OLC 403 D 1 
HETATM 59 H H2 OLC . . . Q 2 -25.575 -94.923 161.582 1 156.68 ? H2 OLC 403 D 1 
HETATM 60 H H2A OLC . . . Q 2 -27.206 -94.353 161.762 1 155.78 ? H2A OLC 403 D 1 
HETATM 61 H H21 OLC . . . Q 2 -25.296 -93.109 159.971 1 159.46 ? H21 OLC 403 D 1 
HETATM 62 H H21A OLC . . . Q 2 -26.958 -92.634 160.275 1 158.82 ? H21A OLC 403 D 1 
HETATM 63 H H22 OLC . . . Q 2 -24.801 -90.441 160.25 1 159.06 ? H22 OLC 403 D 1 
HETATM 64 H HO25 OLC . . . Q 2 -23.576 -90.898 158.058 1 158.59 ? HO25 OLC 403 D 1 
HETATM 65 H HO23 OLC . . . Q 2 -26.742 -89.938 161.106 1 158.87 ? HO23 OLC 403 D 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           65 
#