data_5OGE # _model_server_result.job_id amXvd5K-b4BzL3p7zy4kvA _model_server_result.datetime_utc '2024-10-15 11:30:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":404}' # _entry.id 5OGE # _exptl.entry_id 5OGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.92 _cell.angle_beta 90.12 _cell.angle_gamma 90.06 _cell.entry_id 5OGE _cell.length_a 45.57 _cell.length_b 102.91 _cell.length_c 181.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,T 1 1 B,M,N 2 1 G 2 2 C 3 1 H 3 2 D,F,O,P,Q,R,S 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 235 n n C10 C9 OLC doub 236 n n C10 C11 OLC sing 237 n n C9 C8 OLC sing 238 n n C17 C16 OLC sing 239 z n C11 C12 OLC sing 240 n n C8 C7 OLC sing 241 n n C24 C22 OLC sing 242 n n C24 O25 OLC sing 243 n n C16 C15 OLC sing 244 n n C12 C13 OLC sing 245 n n C7 C6 OLC sing 246 n n C15 C14 OLC sing 247 n n C13 C14 OLC sing 248 n n C6 C5 OLC sing 249 n n C5 C4 OLC sing 250 n n C4 C3 OLC sing 251 n n C3 C2 OLC sing 252 n n C2 C1 OLC sing 253 n n C21 C22 OLC sing 254 n n C21 O20 OLC sing 255 n n C1 O19 OLC doub 256 n n C1 O20 OLC sing 257 n n C22 O23 OLC sing 258 n n C18 H18 OLC sing 259 n n C18 H18A OLC sing 260 n n C18 H18B OLC sing 261 n n C10 H10 OLC sing 262 n n C9 H9 OLC sing 263 n n C17 H17 OLC sing 264 n n C17 H17A OLC sing 265 n n C11 H11 OLC sing 266 n n C11 H11A OLC sing 267 n n C8 H8 OLC sing 268 n n C8 H8A OLC sing 269 n n C24 H24 OLC sing 270 n n C24 H24A OLC sing 271 n n C16 H16 OLC sing 272 n n C16 H16A OLC sing 273 n n C12 H12 OLC sing 274 n n C12 H12A OLC sing 275 n n C7 H7 OLC sing 276 n n C7 H7A OLC sing 277 n n C15 H15 OLC sing 278 n n C15 H15A OLC sing 279 n n C13 H13 OLC sing 280 n n C13 H13A OLC sing 281 n n C6 H6 OLC sing 282 n n C6 H6A OLC sing 283 n n C14 H14 OLC sing 284 n n C14 H14A OLC sing 285 n n C5 H5 OLC sing 286 n n C5 H5A OLC sing 287 n n C4 H4 OLC sing 288 n n C4 H4A OLC sing 289 n n C3 H3 OLC sing 290 n n C3 H3A OLC sing 291 n n C2 H2 OLC sing 292 n n C2 H2A OLC sing 293 n n C21 H21 OLC sing 294 n n C21 H21A OLC sing 295 n n C22 H22 OLC sing 296 n n O25 HO25 OLC sing 297 n n O23 HO23 OLC sing 298 n n # _atom_sites.entry_id 5OGE _atom_sites.fract_transf_matrix[1][1] 0.021944 _atom_sites.fract_transf_matrix[1][2] 0.000023 _atom_sites.fract_transf_matrix[1][3] 0.000046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009717 _atom_sites.fract_transf_matrix[2][3] -0.000014 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 8 OLC OLC . J 2 OLC A 1 402 9 OLC OLC . K 2 OLC A 1 403 11 OLC OLC . L 2 OLC A 1 404 12 OLC OLC . M 2 OLC B 1 401 6 OLC OLC . N 2 OLC B 1 402 7 OLC OLC . O 2 OLC D 1 401 1 OLC OLC . P 2 OLC D 1 402 2 OLC OLC . Q 2 OLC D 1 403 3 OLC OLC . R 2 OLC D 1 404 4 OLC OLC . S 2 OLC D 1 405 13 OLC OLC . T 2 OLC E 1 401 10 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . L 2 -54.519 -61.984 47.122 1 95.02 ? C18 OLC 404 A 1 HETATM 2 C C10 OLC . . . L 2 -59.961 -54.6 43.585 1 110.78 ? C10 OLC 404 A 1 HETATM 3 C C9 OLC . . . L 2 -60.235 -53.435 44.181 1 113.42 ? C9 OLC 404 A 1 HETATM 4 C C17 OLC . . . L 2 -54.377 -60.75 46.234 1 97.06 ? C17 OLC 404 A 1 HETATM 5 C C11 OLC . . . L 2 -58.629 -55.253 43.457 1 108.01 ? C11 OLC 404 A 1 HETATM 6 C C8 OLC . . . L 2 -59.283 -52.5 44.855 1 115.07 ? C8 OLC 404 A 1 HETATM 7 C C24 OLC . . . L 2 -55.445 -40.607 47.517 1 149.51 ? C24 OLC 404 A 1 HETATM 8 C C16 OLC . . . L 2 -55.713 -60.421 45.556 1 99.03 ? C16 OLC 404 A 1 HETATM 9 C C12 OLC . . . L 2 -58.707 -56.665 44.031 1 105.93 ? C12 OLC 404 A 1 HETATM 10 C C7 OLC . . . L 2 -59.014 -51.299 43.966 1 119.72 ? C7 OLC 404 A 1 HETATM 11 C C15 OLC . . . L 2 -55.849 -58.913 45.28 1 100.79 ? C15 OLC 404 A 1 HETATM 12 C C13 OLC . . . L 2 -57.295 -57.255 44.08 1 104.65 ? C13 OLC 404 A 1 HETATM 13 C C6 OLC . . . L 2 -58.513 -50.126 44.811 1 122.8 ? C6 OLC 404 A 1 HETATM 14 C C14 OLC . . . L 2 -57.276 -58.582 44.827 1 102.09 ? C14 OLC 404 A 1 HETATM 15 C C5 OLC . . . L 2 -59.707 -49.252 45.218 1 127.64 ? C5 OLC 404 A 1 HETATM 16 C C4 OLC . . . L 2 -59.315 -48.156 46.216 1 131.1 ? C4 OLC 404 A 1 HETATM 17 C C3 OLC . . . L 2 -58.42 -47.102 45.547 1 135.95 ? C3 OLC 404 A 1 HETATM 18 C C2 OLC . . . L 2 -58.317 -45.862 46.442 1 139.86 ? C2 OLC 404 A 1 HETATM 19 C C21 OLC . . . L 2 -56.32 -42.709 46.423 1 148.17 ? C21 OLC 404 A 1 HETATM 20 C C1 OLC . . . L 2 -57.501 -44.768 45.789 1 143.75 ? C1 OLC 404 A 1 HETATM 21 C C22 OLC . . . L 2 -56.411 -41.816 47.702 1 148.45 ? C22 OLC 404 A 1 HETATM 22 O O19 OLC . . . L 2 -57.204 -44.638 44.599 1 144.64 ? O19 OLC 404 A 1 HETATM 23 O O25 OLC . . . L 2 -55.421 -39.981 48.771 1 149.05 ? O25 OLC 404 A 1 HETATM 24 O O23 OLC . . . L 2 -57.716 -41.395 47.924 1 149.93 ? O23 OLC 404 A 1 HETATM 25 O O20 OLC . . . L 2 -57.103 -43.859 46.75 1 145.86 ? O20 OLC 404 A 1 HETATM 26 H H18 OLC . . . L 2 -54.76 -62.877 46.547 1 94.73 ? H18 OLC 404 A 1 HETATM 27 H H18A OLC . . . L 2 -53.598 -62.196 47.663 1 94 ? H18A OLC 404 A 1 HETATM 28 H H18B OLC . . . L 2 -55.302 -61.872 47.87 1 94.87 ? H18B OLC 404 A 1 HETATM 29 H H10 OLC . . . L 2 -60.771 -55.166 43.128 1 111.19 ? H10 OLC 404 A 1 HETATM 30 H H9 OLC . . . L 2 -61.266 -53.089 44.208 1 114.69 ? H9 OLC 404 A 1 HETATM 31 H H17 OLC . . . L 2 -54.016 -59.907 46.821 1 97.31 ? H17 OLC 404 A 1 HETATM 32 H H17A OLC . . . L 2 -53.606 -60.922 45.485 1 96.99 ? H17A OLC 404 A 1 HETATM 33 H H11 OLC . . . L 2 -58.344 -55.291 42.408 1 108.59 ? H11 OLC 404 A 1 HETATM 34 H H11A OLC . . . L 2 -57.828 -54.69 43.933 1 107.65 ? H11A OLC 404 A 1 HETATM 35 H H8 OLC . . . L 2 -59.72 -52.177 45.799 1 115.1 ? H8 OLC 404 A 1 HETATM 36 H H8A OLC . . . L 2 -58.34 -52.967 45.129 1 113.36 ? H8A OLC 404 A 1 HETATM 37 H H24 OLC . . . L 2 -54.461 -40.953 47.204 1 148.76 ? H24 OLC 404 A 1 HETATM 38 H H24A OLC . . . L 2 -55.796 -39.935 46.734 1 151.35 ? H24A OLC 404 A 1 HETATM 39 H H16 OLC . . . L 2 -55.817 -60.993 44.635 1 99.16 ? H16 OLC 404 A 1 HETATM 40 H H16A OLC . . . L 2 -56.537 -60.757 46.181 1 98.77 ? H16A OLC 404 A 1 HETATM 41 H H12 OLC . . . L 2 -59.162 -56.646 45.02 1 105.21 ? H12 OLC 404 A 1 HETATM 42 H H12A OLC . . . L 2 -59.364 -57.285 43.423 1 106.2 ? H12A OLC 404 A 1 HETATM 43 H H7 OLC . . . L 2 -58.279 -51.563 43.208 1 119.4 ? H7 OLC 404 A 1 HETATM 44 H H7A OLC . . . L 2 -59.915 -51.024 43.419 1 121.38 ? H7A OLC 404 A 1 HETATM 45 H H15 OLC . . . L 2 -55.617 -58.345 46.178 1 100.6 ? H15 OLC 404 A 1 HETATM 46 H H15A OLC . . . L 2 -55.113 -58.571 44.555 1 101.3 ? H15A OLC 404 A 1 HETATM 47 H H13 OLC . . . L 2 -56.917 -57.384 43.067 1 105.22 ? H13 OLC 404 A 1 HETATM 48 H H13A OLC . . . L 2 -56.607 -56.553 44.548 1 104.77 ? H13A OLC 404 A 1 HETATM 49 H H6 OLC . . . L 2 -57.986 -50.483 45.693 1 121.25 ? H6 OLC 404 A 1 HETATM 50 H H6A OLC . . . L 2 -57.772 -49.552 44.257 1 123.27 ? H6A OLC 404 A 1 HETATM 51 H H14 OLC . . . L 2 -57.679 -59.381 44.206 1 101.75 ? H14 OLC 404 A 1 HETATM 52 H H14A OLC . . . L 2 -57.931 -58.528 45.694 1 101.81 ? H14A OLC 404 A 1 HETATM 53 H H5 OLC . . . L 2 -60.153 -48.804 44.332 1 129.25 ? H5 OLC 404 A 1 HETATM 54 H H5A OLC . . . L 2 -60.492 -49.878 45.64 1 127.22 ? H5A OLC 404 A 1 HETATM 55 H H4 OLC . . . L 2 -60.207 -47.688 46.628 1 131.94 ? H4 OLC 404 A 1 HETATM 56 H H4A OLC . . . L 2 -58.807 -48.595 47.074 1 129.44 ? H4A OLC 404 A 1 HETATM 57 H H3 OLC . . . L 2 -57.425 -47.502 45.356 1 134.94 ? H3 OLC 404 A 1 HETATM 58 H H3A OLC . . . L 2 -58.812 -46.826 44.569 1 137.51 ? H3A OLC 404 A 1 HETATM 59 H H2 OLC . . . L 2 -59.305 -45.469 46.678 1 141.02 ? H2 OLC 404 A 1 HETATM 60 H H2A OLC . . . L 2 -57.877 -46.113 47.406 1 138.52 ? H2A OLC 404 A 1 HETATM 61 H H21 OLC . . . L 2 -56.708 -42.197 45.543 1 149.99 ? H21 OLC 404 A 1 HETATM 62 H H21A OLC . . . L 2 -55.291 -42.99 46.204 1 147.4 ? H21A OLC 404 A 1 HETATM 63 H H22 OLC . . . L 2 -56.164 -42.38 48.6 1 146.75 ? H22 OLC 404 A 1 HETATM 64 H HO25 OLC . . . L 2 -55.376 -39.003 48.606 1 150.48 ? HO25 OLC 404 A 1 HETATM 65 H HO23 OLC . . . L 2 -57.873 -41.326 48.902 1 149.2 ? HO23 OLC 404 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #