data_5OGE
#
_model_server_result.job_id            gNQDq9kwLVmKSuZNjeeLHw 
_model_server_result.datetime_utc      '2024-10-15 11:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":405}' 
#
_entry.id    5OGE 
#
_exptl.entry_id    5OGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.92 
_cell.angle_beta          90.12 
_cell.angle_gamma         90.06 
_cell.entry_id            5OGE 
_cell.length_a            45.57 
_cell.length_b            102.91 
_cell.length_c            181.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,K,L,T 1 1 
B,M,N 2 1 
G 2 2 
C 3 1 
H 3 2 
D,F,O,P,Q,R,S 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.57 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 235 n n 
C10 C9 OLC doub 236 n n 
C10 C11 OLC sing 237 n n 
C9 C8 OLC sing 238 n n 
C17 C16 OLC sing 239 z n 
C11 C12 OLC sing 240 n n 
C8 C7 OLC sing 241 n n 
C24 C22 OLC sing 242 n n 
C24 O25 OLC sing 243 n n 
C16 C15 OLC sing 244 n n 
C12 C13 OLC sing 245 n n 
C7 C6 OLC sing 246 n n 
C15 C14 OLC sing 247 n n 
C13 C14 OLC sing 248 n n 
C6 C5 OLC sing 249 n n 
C5 C4 OLC sing 250 n n 
C4 C3 OLC sing 251 n n 
C3 C2 OLC sing 252 n n 
C2 C1 OLC sing 253 n n 
C21 C22 OLC sing 254 n n 
C21 O20 OLC sing 255 n n 
C1 O19 OLC doub 256 n n 
C1 O20 OLC sing 257 n n 
C22 O23 OLC sing 258 n n 
C18 H18 OLC sing 259 n n 
C18 H18A OLC sing 260 n n 
C18 H18B OLC sing 261 n n 
C10 H10 OLC sing 262 n n 
C9 H9 OLC sing 263 n n 
C17 H17 OLC sing 264 n n 
C17 H17A OLC sing 265 n n 
C11 H11 OLC sing 266 n n 
C11 H11A OLC sing 267 n n 
C8 H8 OLC sing 268 n n 
C8 H8A OLC sing 269 n n 
C24 H24 OLC sing 270 n n 
C24 H24A OLC sing 271 n n 
C16 H16 OLC sing 272 n n 
C16 H16A OLC sing 273 n n 
C12 H12 OLC sing 274 n n 
C12 H12A OLC sing 275 n n 
C7 H7 OLC sing 276 n n 
C7 H7A OLC sing 277 n n 
C15 H15 OLC sing 278 n n 
C15 H15A OLC sing 279 n n 
C13 H13 OLC sing 280 n n 
C13 H13A OLC sing 281 n n 
C6 H6 OLC sing 282 n n 
C6 H6A OLC sing 283 n n 
C14 H14 OLC sing 284 n n 
C14 H14A OLC sing 285 n n 
C5 H5 OLC sing 286 n n 
C5 H5A OLC sing 287 n n 
C4 H4 OLC sing 288 n n 
C4 H4A OLC sing 289 n n 
C3 H3 OLC sing 290 n n 
C3 H3A OLC sing 291 n n 
C2 H2 OLC sing 292 n n 
C2 H2A OLC sing 293 n n 
C21 H21 OLC sing 294 n n 
C21 H21A OLC sing 295 n n 
C22 H22 OLC sing 296 n n 
O25 HO25 OLC sing 297 n n 
O23 HO23 OLC sing 298 n n 
#
_atom_sites.entry_id                     5OGE 
_atom_sites.fract_transf_matrix[1][1]    0.021944 
_atom_sites.fract_transf_matrix[1][2]    0.000023 
_atom_sites.fract_transf_matrix[1][3]    0.000046 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009717 
_atom_sites.fract_transf_matrix[2][3]    -0.000014 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 401 8 OLC OLC . 
J 2 OLC A 1 402 9 OLC OLC . 
K 2 OLC A 1 403 11 OLC OLC . 
L 2 OLC A 1 404 12 OLC OLC . 
M 2 OLC B 1 401 6 OLC OLC . 
N 2 OLC B 1 402 7 OLC OLC . 
O 2 OLC D 1 401 1 OLC OLC . 
P 2 OLC D 1 402 2 OLC OLC . 
Q 2 OLC D 1 403 3 OLC OLC . 
R 2 OLC D 1 404 4 OLC OLC . 
S 2 OLC D 1 405 13 OLC OLC . 
T 2 OLC E 1 401 10 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . S 2 -31.182 -97.863 136.46 1 87.74 ? C18 OLC 405 D 1 
HETATM 2 C C10 OLC . . . S 2 -28.836 -106.525 135.182 1 99.86 ? C10 OLC 405 D 1 
HETATM 3 C C9 OLC . . . S 2 -28.78 -107.848 134.934 1 100.62 ? C9 OLC 405 D 1 
HETATM 4 C C17 OLC . . . S 2 -30.961 -99.339 136.821 1 89.94 ? C17 OLC 405 D 1 
HETATM 5 C C11 OLC . . . S 2 -30.067 -105.735 135.541 1 98.45 ? C11 OLC 405 D 1 
HETATM 6 C C8 OLC . . . S 2 -29.959 -108.786 134.944 1 101.34 ? C8 OLC 405 D 1 
HETATM 7 C C24 OLC . . . S 2 -29.308 -121.534 134.339 1 119.98 ? C24 OLC 405 D 1 
HETATM 8 C C16 OLC . . . S 2 -30.401 -100.146 135.628 1 91.56 ? C16 OLC 405 D 1 
HETATM 9 C C12 OLC . . . S 2 -30.494 -104.789 134.405 1 96.16 ? C12 OLC 405 D 1 
HETATM 10 C C7 OLC . . . S 2 -29.603 -110.18 134.369 1 103.14 ? C7 OLC 405 D 1 
HETATM 11 C C15 OLC . . . S 2 -30.536 -101.68 135.835 1 93.51 ? C15 OLC 405 D 1 
HETATM 12 C C13 OLC . . . S 2 -31.617 -103.833 134.877 1 94.85 ? C13 OLC 405 D 1 
HETATM 13 C C6 OLC . . . S 2 -29.447 -111.283 135.447 1 105.42 ? C6 OLC 405 D 1 
HETATM 14 C C14 OLC . . . S 2 -31.274 -102.34 134.637 1 94.05 ? C14 OLC 405 D 1 
HETATM 15 C C5 OLC . . . S 2 -29.825 -112.648 134.829 1 107.03 ? C5 OLC 405 D 1 
HETATM 16 C C4 OLC . . . S 2 -29.604 -113.829 135.793 1 108.93 ? C4 OLC 405 D 1 
HETATM 17 C C3 OLC . . . S 2 -28.157 -114.356 135.713 1 111.01 ? C3 OLC 405 D 1 
HETATM 18 C C2 OLC . . . S 2 -28.044 -115.843 136.097 1 114.13 ? C2 OLC 405 D 1 
HETATM 19 C C21 OLC . . . S 2 -28.822 -119.037 134.301 1 118.43 ? C21 OLC 405 D 1 
HETATM 20 C C1 OLC . . . S 2 -28.569 -116.714 134.978 1 116.82 ? C1 OLC 405 D 1 
HETATM 21 C C22 OLC . . . S 2 -28.388 -120.397 134.914 1 120.09 ? C22 OLC 405 D 1 
HETATM 22 O O19 OLC . . . S 2 -29.105 -116.348 133.937 1 117.48 ? O19 OLC 405 D 1 
HETATM 23 O O25 OLC . . . S 2 -30.277 -121.77 135.33 1 119.43 ? O25 OLC 405 D 1 
HETATM 24 O O23 OLC . . . S 2 -27.05 -120.622 134.646 1 121.08 ? O23 OLC 405 D 1 
HETATM 25 O O20 OLC . . . S 2 -28.368 -118.056 135.24 1 118.48 ? O20 OLC 405 D 1 
HETATM 26 H H18 OLC . . . S 2 -30.253 -97.35 136.219 1 87.46 ? H18 OLC 405 D 1 
HETATM 27 H H18A OLC . . . S 2 -31.835 -97.752 135.595 1 87.24 ? H18A OLC 405 D 1 
HETATM 28 H H18B OLC . . . S 2 -31.647 -97.308 137.274 1 87.35 ? H18B OLC 405 D 1 
HETATM 29 H H10 OLC . . . S 2 -27.924 -105.931 135.136 1 99.76 ? H10 OLC 405 D 1 
HETATM 30 H H9 OLC . . . S 2 -27.817 -108.309 134.719 1 100.95 ? H9 OLC 405 D 1 
HETATM 31 H H17 OLC . . . S 2 -31.896 -99.771 137.175 1 90.1 ? H17 OLC 405 D 1 
HETATM 32 H H17A OLC . . . S 2 -30.277 -99.408 137.666 1 90.33 ? H17A OLC 405 D 1 
HETATM 33 H H11 OLC . . . S 2 -30.887 -106.413 135.764 1 98.81 ? H11 OLC 405 D 1 
HETATM 34 H H11A OLC . . . S 2 -29.912 -105.176 136.464 1 98.43 ? H11A OLC 405 D 1 
HETATM 35 H H8 OLC . . . S 2 -30.337 -108.86 135.962 1 101.66 ? H8 OLC 405 D 1 
HETATM 36 H H8A OLC . . . S 2 -30.792 -108.364 134.384 1 100.6 ? H8A OLC 405 D 1 
HETATM 37 H H24 OLC . . . S 2 -29.751 -121.226 133.393 1 119.13 ? H24 OLC 405 D 1 
HETATM 38 H H24A OLC . . . S 2 -28.733 -122.433 134.121 1 120.89 ? H24A OLC 405 D 1 
HETATM 39 H H16 OLC . . . S 2 -30.905 -99.839 134.713 1 91.15 ? H16 OLC 405 D 1 
HETATM 40 H H16A OLC . . . S 2 -29.355 -99.887 135.468 1 91.62 ? H16A OLC 405 D 1 
HETATM 41 H H12 OLC . . . S 2 -29.63 -104.237 134.04 1 96 ? H12 OLC 405 D 1 
HETATM 42 H H12A OLC . . . S 2 -30.836 -105.371 133.55 1 95.97 ? H12A OLC 405 D 1 
HETATM 43 H H7 OLC . . . S 2 -30.376 -110.466 133.657 1 102.9 ? H7 OLC 405 D 1 
HETATM 44 H H7A OLC . . . S 2 -28.696 -110.127 133.77 1 103.18 ? H7A OLC 405 D 1 
HETATM 45 H H15 OLC . . . S 2 -29.549 -102.125 135.957 1 94 ? H15 OLC 405 D 1 
HETATM 46 H H15A OLC . . . S 2 -31.056 -101.9 136.766 1 93.91 ? H15A OLC 405 D 1 
HETATM 47 H H13 OLC . . . S 2 -32.542 -104.081 134.36 1 94.54 ? H13 OLC 405 D 1 
HETATM 48 H H13A OLC . . . S 2 -31.845 -103.995 135.93 1 95.18 ? H13A OLC 405 D 1 
HETATM 49 H H6 OLC . . . S 2 -28.428 -111.305 135.831 1 105.88 ? H6 OLC 405 D 1 
HETATM 50 H H6A OLC . . . S 2 -30.072 -111.08 136.315 1 105.4 ? H6A OLC 405 D 1 
HETATM 51 H H14 OLC . . . S 2 -32.192 -101.793 134.43 1 93.64 ? H14 OLC 405 D 1 
HETATM 52 H H14A OLC . . . S 2 -30.682 -102.223 133.731 1 93.98 ? H14A OLC 405 D 1 
HETATM 53 H H5 OLC . . . S 2 -30.871 -112.629 134.528 1 106.75 ? H5 OLC 405 D 1 
HETATM 54 H H5A OLC . . . S 2 -29.28 -112.798 133.898 1 106.92 ? H5A OLC 405 D 1 
HETATM 55 H H4 OLC . . . S 2 -29.826 -113.516 136.813 1 109.03 ? H4 OLC 405 D 1 
HETATM 56 H H4A OLC . . . S 2 -30.327 -114.617 135.587 1 109.08 ? H4A OLC 405 D 1 
HETATM 57 H H3 OLC . . . S 2 -27.749 -114.22 134.714 1 110.57 ? H3 OLC 405 D 1 
HETATM 58 H H3A OLC . . . S 2 -27.51 -113.766 136.36 1 111.16 ? H3A OLC 405 D 1 
HETATM 59 H H2 OLC . . . S 2 -27.012 -116.119 136.307 1 114.7 ? H2 OLC 405 D 1 
HETATM 60 H H2A OLC . . . S 2 -28.589 -116.057 137.015 1 114.41 ? H2A OLC 405 D 1 
HETATM 61 H H21 OLC . . . S 2 -28.381 -118.876 133.318 1 117.87 ? H21 OLC 405 D 1 
HETATM 62 H H21A OLC . . . S 2 -29.902 -118.983 134.178 1 118.03 ? H21A OLC 405 D 1 
HETATM 63 H H22 OLC . . . S 2 -28.418 -120.376 136.003 1 120.61 ? H22 OLC 405 D 1 
HETATM 64 H HO25 OLC . . . S 2 -30.316 -122.753 135.469 1 120.18 ? HO25 OLC 405 D 1 
HETATM 65 H HO23 OLC . . . S 2 -26.76 -121.437 135.134 1 122.23 ? HO23 OLC 405 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    108 
_model_server_stats.query_time_ms           515 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           65 
#