data_5OGF
#
_model_server_result.job_id            G2ym40_aCe4WQykMSOJ13Q 
_model_server_result.datetime_utc      '2024-11-14 06:33:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ogf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":508}' 
#
_entry.id    5OGF 
#
_exptl.entry_id    5OGF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.005 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRITE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OGF 
_cell.length_a            96.263 
_cell.length_b            96.263 
_cell.length_c            96.263 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 88 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc2 A NE2 HIS 93 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc3 A NE2 HIS 128 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc4 A SG CYS 129 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc5 A ND1 HIS 138 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc6 A SD MET 143 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc7 A NE2 HIS 299 A HIS 306 1_555 C CU CU . A CU 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc8 C CU CU . A CU 502 1_555 J N NO . A NO 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc9 C CU CU . A CU 502 1_555 J O NO . A NO 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
#
_chem_comp.formula           'N O2 -1' 
_chem_comp.formula_weight    46.005 
_chem_comp.id                NO2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRITE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO2 doub 244 n n 
N O2 NO2 sing 245 n n 
#
_atom_sites.entry_id                     5OGF 
_atom_sites.fract_transf_matrix[1][1]    0.010388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 501 501 CU CU . 
C 2 CU A 1 502 502 CU CU . 
D 3 ACT A 1 503 1 ACT ACT . 
E 4 NO2 A 1 504 1 NO2 NO2 . 
F 4 NO2 A 1 505 2 NO2 NO2 . 
G 4 NO2 A 1 506 3 NO2 NO2 . 
H 4 NO2 A 1 507 4 NO2 NO2 . 
I 4 NO2 A 1 508 5 NO2 NO2 . 
J 5 NO A 1 509 1 NO NO . 
K 6 HOH A 1 601 2163 HOH HOH . 
K 6 HOH A 2 602 2022 HOH HOH . 
K 6 HOH A 3 603 2276 HOH HOH . 
K 6 HOH A 4 604 2324 HOH HOH . 
K 6 HOH A 5 605 2 HOH HOH . 
K 6 HOH A 6 606 2398 HOH HOH . 
K 6 HOH A 7 607 9 HOH HOH . 
K 6 HOH A 8 608 2212 HOH HOH . 
K 6 HOH A 9 609 2195 HOH HOH . 
K 6 HOH A 10 610 2423 HOH HOH . 
K 6 HOH A 11 611 2143 HOH HOH . 
K 6 HOH A 12 612 2283 HOH HOH . 
K 6 HOH A 13 613 2405 HOH HOH . 
K 6 HOH A 14 614 2338 HOH HOH . 
K 6 HOH A 15 615 2052 HOH HOH . 
K 6 HOH A 16 616 12 HOH HOH . 
K 6 HOH A 17 617 2403 HOH HOH . 
K 6 HOH A 18 618 2114 HOH HOH . 
K 6 HOH A 19 619 2299 HOH HOH . 
K 6 HOH A 20 620 2151 HOH HOH . 
K 6 HOH A 21 621 2399 HOH HOH . 
K 6 HOH A 22 622 2298 HOH HOH . 
K 6 HOH A 23 623 2284 HOH HOH . 
K 6 HOH A 24 624 2371 HOH HOH . 
K 6 HOH A 25 625 2241 HOH HOH . 
K 6 HOH A 26 626 2223 HOH HOH . 
K 6 HOH A 27 627 2139 HOH HOH . 
K 6 HOH A 28 628 2340 HOH HOH . 
K 6 HOH A 29 629 2397 HOH HOH . 
K 6 HOH A 30 630 2410 HOH HOH . 
K 6 HOH A 31 631 2249 HOH HOH . 
K 6 HOH A 32 632 2219 HOH HOH . 
K 6 HOH A 33 633 2386 HOH HOH . 
K 6 HOH A 34 634 2208 HOH HOH . 
K 6 HOH A 35 635 22 HOH HOH . 
K 6 HOH A 36 636 10 HOH HOH . 
K 6 HOH A 37 637 2240 HOH HOH . 
K 6 HOH A 38 638 2037 HOH HOH . 
K 6 HOH A 39 639 2339 HOH HOH . 
K 6 HOH A 40 640 2335 HOH HOH . 
K 6 HOH A 41 641 2239 HOH HOH . 
K 6 HOH A 42 642 2326 HOH HOH . 
K 6 HOH A 43 643 2265 HOH HOH . 
K 6 HOH A 44 644 2345 HOH HOH . 
K 6 HOH A 45 645 2182 HOH HOH . 
K 6 HOH A 46 646 2247 HOH HOH . 
K 6 HOH A 47 647 2384 HOH HOH . 
K 6 HOH A 48 648 2277 HOH HOH . 
K 6 HOH A 49 649 2424 HOH HOH . 
K 6 HOH A 50 650 2087 HOH HOH . 
K 6 HOH A 51 651 2401 HOH HOH . 
K 6 HOH A 52 652 2323 HOH HOH . 
K 6 HOH A 53 653 2451 HOH HOH . 
K 6 HOH A 54 654 2408 HOH HOH . 
K 6 HOH A 55 655 2365 HOH HOH . 
K 6 HOH A 56 656 2400 HOH HOH . 
K 6 HOH A 57 657 2347 HOH HOH . 
K 6 HOH A 58 658 2376 HOH HOH . 
K 6 HOH A 59 659 2369 HOH HOH . 
K 6 HOH A 60 660 2355 HOH HOH . 
K 6 HOH A 61 661 2181 HOH HOH . 
K 6 HOH A 62 662 2385 HOH HOH . 
K 6 HOH A 63 663 2449 HOH HOH . 
K 6 HOH A 64 664 2142 HOH HOH . 
K 6 HOH A 65 665 2411 HOH HOH . 
K 6 HOH A 66 666 2337 HOH HOH . 
K 6 HOH A 67 667 2391 HOH HOH . 
K 6 HOH A 68 668 2172 HOH HOH . 
K 6 HOH A 69 669 2478 HOH HOH . 
K 6 HOH A 70 670 2056 HOH HOH . 
K 6 HOH A 71 671 2313 HOH HOH . 
K 6 HOH A 72 672 2235 HOH HOH . 
K 6 HOH A 73 673 13 HOH HOH . 
K 6 HOH A 74 674 2446 HOH HOH . 
K 6 HOH A 75 675 2220 HOH HOH . 
K 6 HOH A 76 676 2135 HOH HOH . 
K 6 HOH A 77 677 2138 HOH HOH . 
K 6 HOH A 78 678 2392 HOH HOH . 
K 6 HOH A 79 679 2093 HOH HOH . 
K 6 HOH A 80 680 2236 HOH HOH . 
K 6 HOH A 81 681 2279 HOH HOH . 
K 6 HOH A 82 682 2184 HOH HOH . 
K 6 HOH A 83 683 2342 HOH HOH . 
K 6 HOH A 84 684 2271 HOH HOH . 
K 6 HOH A 85 685 2179 HOH HOH . 
K 6 HOH A 86 686 2180 HOH HOH . 
K 6 HOH A 87 687 2248 HOH HOH . 
K 6 HOH A 88 688 2189 HOH HOH . 
K 6 HOH A 89 689 2140 HOH HOH . 
K 6 HOH A 90 690 2110 HOH HOH . 
K 6 HOH A 91 691 2091 HOH HOH . 
K 6 HOH A 92 692 2468 HOH HOH . 
K 6 HOH A 93 693 2090 HOH HOH . 
K 6 HOH A 94 694 2047 HOH HOH . 
K 6 HOH A 95 695 2127 HOH HOH . 
K 6 HOH A 96 696 2057 HOH HOH . 
K 6 HOH A 97 697 2370 HOH HOH . 
K 6 HOH A 98 698 2432 HOH HOH . 
K 6 HOH A 99 699 2280 HOH HOH . 
K 6 HOH A 100 700 2378 HOH HOH . 
K 6 HOH A 101 701 2054 HOH HOH . 
K 6 HOH A 102 702 2444 HOH HOH . 
K 6 HOH A 103 703 2161 HOH HOH . 
K 6 HOH A 104 704 2232 HOH HOH . 
K 6 HOH A 105 705 2070 HOH HOH . 
K 6 HOH A 106 706 2302 HOH HOH . 
K 6 HOH A 107 707 2394 HOH HOH . 
K 6 HOH A 108 708 2104 HOH HOH . 
K 6 HOH A 109 709 2482 HOH HOH . 
K 6 HOH A 110 710 2263 HOH HOH . 
K 6 HOH A 111 711 2168 HOH HOH . 
K 6 HOH A 112 712 2361 HOH HOH . 
K 6 HOH A 113 713 2029 HOH HOH . 
K 6 HOH A 114 714 11 HOH HOH . 
K 6 HOH A 115 715 2409 HOH HOH . 
K 6 HOH A 116 716 2233 HOH HOH . 
K 6 HOH A 117 717 2018 HOH HOH . 
K 6 HOH A 118 718 2480 HOH HOH . 
K 6 HOH A 119 719 2287 HOH HOH . 
K 6 HOH A 120 720 2412 HOH HOH . 
K 6 HOH A 121 721 2270 HOH HOH . 
K 6 HOH A 122 722 2222 HOH HOH . 
K 6 HOH A 123 723 2316 HOH HOH . 
K 6 HOH A 124 724 2178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO2 . . . I 4 -0.051 6.637 38.812 1 70.99 ? N NO2 508 A 1 
HETATM 2 O O1 NO2 . . . I 4 0.795 6.212 39.598 1 67.35 ? O1 NO2 508 A 1 
HETATM 3 O O2 NO2 . . . I 4 0.302 7.277 37.609 1 62.71 ? O2 NO2 508 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           3 
#