data_5OGK # _model_server_result.job_id ic4K88-m-RIf5yWQvzoRYA _model_server_result.datetime_utc '2024-10-28 02:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ogk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 5OGK # _exptl.entry_id 5OGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.86 _cell.angle_beta 90.07 _cell.angle_gamma 90.11 _cell.entry_id 5OGK _cell.length_a 45.319 _cell.length_b 101.694 _cell.length_c 180.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K 1 1 C,E,L,M,P,Q 2 1 D,N,O 3 1 F 3 2 G,R,S 4 1 H 4 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0.220146 -0.43987 -180.191329 3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -0.220146 0.43987 180.191329 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 S N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 302 n n C10 C9 OLC doub 303 n n C10 C11 OLC sing 304 n n C9 C8 OLC sing 305 n n C17 C16 OLC sing 306 z n C11 C12 OLC sing 307 n n C8 C7 OLC sing 308 n n C24 C22 OLC sing 309 n n C24 O25 OLC sing 310 n n C16 C15 OLC sing 311 n n C12 C13 OLC sing 312 n n C7 C6 OLC sing 313 n n C15 C14 OLC sing 314 n n C13 C14 OLC sing 315 n n C6 C5 OLC sing 316 n n C5 C4 OLC sing 317 n n C4 C3 OLC sing 318 n n C3 C2 OLC sing 319 n n C2 C1 OLC sing 320 n n C21 C22 OLC sing 321 n n C21 O20 OLC sing 322 n n C1 O19 OLC doub 323 n n C1 O20 OLC sing 324 n n C22 O23 OLC sing 325 n n C18 H18 OLC sing 326 n n C18 H18A OLC sing 327 n n C18 H18B OLC sing 328 n n C10 H10 OLC sing 329 n n C9 H9 OLC sing 330 n n C17 H17 OLC sing 331 n n C17 H17A OLC sing 332 n n C11 H11 OLC sing 333 n n C11 H11A OLC sing 334 n n C8 H8 OLC sing 335 n n C8 H8A OLC sing 336 n n C24 H24 OLC sing 337 n n C24 H24A OLC sing 338 n n C16 H16 OLC sing 339 n n C16 H16A OLC sing 340 n n C12 H12 OLC sing 341 n n C12 H12A OLC sing 342 n n C7 H7 OLC sing 343 n n C7 H7A OLC sing 344 n n C15 H15 OLC sing 345 n n C15 H15A OLC sing 346 n n C13 H13 OLC sing 347 n n C13 H13A OLC sing 348 n n C6 H6 OLC sing 349 n n C6 H6A OLC sing 350 n n C14 H14 OLC sing 351 n n C14 H14A OLC sing 352 n n C5 H5 OLC sing 353 n n C5 H5A OLC sing 354 n n C4 H4 OLC sing 355 n n C4 H4A OLC sing 356 n n C3 H3 OLC sing 357 n n C3 H3A OLC sing 358 n n C2 H2 OLC sing 359 n n C2 H2A OLC sing 360 n n C21 H21 OLC sing 361 n n C21 H21A OLC sing 362 n n C22 H22 OLC sing 363 n n O25 HO25 OLC sing 364 n n O23 HO23 OLC sing 365 n n # _atom_sites.entry_id 5OGK _atom_sites.fract_transf_matrix[1][1] 0.022066 _atom_sites.fract_transf_matrix[1][2] 0.000044 _atom_sites.fract_transf_matrix[1][3] 0.000028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009833 _atom_sites.fract_transf_matrix[2][3] -0.000024 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GDD A 1 401 1 GDD GDD . J 3 OLC A 1 402 1 OLC OLC . K 3 OLC A 1 403 4 OLC OLC . L 3 OLC C 1 401 5 OLC OLC . M 3 OLC C 1 402 8 OLC OLC . N 2 GDD D 1 401 1 GDD GDD . O 3 OLC D 1 402 7 OLC OLC . P 2 GDD E 1 401 1 GDD GDD . Q 3 OLC E 1 402 6 OLC OLC . R 3 OLC G 1 401 2 OLC OLC . S 3 OLC G 1 402 3 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . O 3 19.963 -11.796 -45.88 1 70.93 ? C18 OLC 402 D 1 HETATM 2 C C10 OLC . . . O 3 16.46 -20.264 -44.707 1 66.24 ? C10 OLC 402 D 1 HETATM 3 C C9 OLC . . . O 3 16.766 -21.452 -44.208 1 73.6 ? C9 OLC 402 D 1 HETATM 4 C C17 OLC . . . O 3 18.572 -12.253 -46.313 1 74.84 ? C17 OLC 402 D 1 HETATM 5 C C11 OLC . . . O 3 17.254 -19.054 -44.361 1 68.62 ? C11 OLC 402 D 1 HETATM 6 C C8 OLC . . . O 3 17.918 -21.649 -43.267 1 74.43 ? C8 OLC 402 D 1 HETATM 7 C C24 OLC . . . O 3 12.594 -31.984 -45.44 1 100.76 ? C24 OLC 402 D 1 HETATM 8 C C16 OLC . . . O 3 18.64 -13.604 -47.035 1 79.6 ? C16 OLC 402 D 1 HETATM 9 C C12 OLC . . . O 3 16.746 -17.814 -45.092 1 76.73 ? C12 OLC 402 D 1 HETATM 10 C C7 OLC . . . O 3 17.924 -23.08 -42.728 1 67.85 ? C7 OLC 402 D 1 HETATM 11 C C15 OLC . . . O 3 18.828 -14.742 -46.023 1 86.07 ? C15 OLC 402 D 1 HETATM 12 C C13 OLC . . . O 3 17.758 -16.685 -44.861 1 83.28 ? C13 OLC 402 D 1 HETATM 13 C C6 OLC . . . O 3 18.42 -24.063 -43.791 1 74.6 ? C6 OLC 402 D 1 HETATM 14 C C14 OLC . . . O 3 17.52 -15.521 -45.824 1 82.15 ? C14 OLC 402 D 1 HETATM 15 C C5 OLC . . . O 3 17.338 -25.104 -44.055 1 67.92 ? C5 OLC 402 D 1 HETATM 16 C C4 OLC . . . O 3 17.128 -26.006 -42.842 1 64.44 ? C4 OLC 402 D 1 HETATM 17 C C3 OLC . . . O 3 16.449 -27.3 -43.292 1 78.05 ? C3 OLC 402 D 1 HETATM 18 C C2 OLC . . . O 3 15.247 -27 -44.197 1 83.24 ? C2 OLC 402 D 1 HETATM 19 C C21 OLC . . . O 3 14.072 -30.514 -44.055 1 90.26 ? C21 OLC 402 D 1 HETATM 20 C C1 OLC . . . O 3 14.247 -28.118 -44.091 1 88.9 ? C1 OLC 402 D 1 HETATM 21 C C22 OLC . . . O 3 13.197 -30.555 -45.343 1 91.83 ? C22 OLC 402 D 1 HETATM 22 O O19 OLC . . . O 3 13.032 -28.037 -43.971 1 84.68 ? O19 OLC 402 D 1 HETATM 23 O O25 OLC . . . O 3 12.033 -32.04 -46.721 1 101.48 ? O25 OLC 402 D 1 HETATM 24 O O23 OLC . . . O 3 12.209 -29.576 -45.335 1 83.13 ? O23 OLC 402 D 1 HETATM 25 O O20 OLC . . . O 3 14.861 -29.334 -44.148 1 87.1 ? O20 OLC 402 D 1 HETATM 26 H H18 OLC . . . O 3 20.639 -11.679 -46.726 1 85.32 ? H18 OLC 402 D 1 HETATM 27 H H18A OLC . . . O 3 20.429 -12.51 -45.202 1 85.32 ? H18A OLC 402 D 1 HETATM 28 H H18B OLC . . . O 3 19.937 -10.84 -45.36 1 85.32 ? H18B OLC 402 D 1 HETATM 29 H H10 OLC . . . O 3 15.622 -20.122 -45.387 1 79.69 ? H10 OLC 402 D 1 HETATM 30 H H9 OLC . . . O 3 16.19 -22.342 -44.46 1 88.53 ? H9 OLC 402 D 1 HETATM 31 H H17 OLC . . . O 3 17.915 -12.318 -45.447 1 90.02 ? H17 OLC 402 D 1 HETATM 32 H H17A OLC . . . O 3 18.119 -11.501 -46.957 1 90.02 ? H17A OLC 402 D 1 HETATM 33 H H11 OLC . . . O 3 17.213 -18.901 -43.283 1 82.55 ? H11 OLC 402 D 1 HETATM 34 H H11A OLC . . . O 3 18.31 -19.207 -44.577 1 82.55 ? H11A OLC 402 D 1 HETATM 35 H H8 OLC . . . O 3 18.848 -21.43 -43.79 1 89.52 ? H8 OLC 402 D 1 HETATM 36 H H8A OLC . . . O 3 17.888 -20.937 -42.443 1 89.52 ? H8A OLC 402 D 1 HETATM 37 H H24 OLC . . . O 3 13.372 -32.733 -45.293 1 121.12 ? H24 OLC 402 D 1 HETATM 38 H H24A OLC . . . O 3 11.851 -32.156 -44.663 1 121.12 ? H24A OLC 402 D 1 HETATM 39 H H16 OLC . . . O 3 17.736 -13.763 -47.621 1 95.72 ? H16 OLC 402 D 1 HETATM 40 H H16A OLC . . . O 3 19.452 -13.603 -47.76 1 95.72 ? H16A OLC 402 D 1 HETATM 41 H H12 OLC . . . O 3 16.63 -18.02 -46.155 1 92.29 ? H12 OLC 402 D 1 HETATM 42 H H12A OLC . . . O 3 15.757 -17.533 -44.735 1 92.29 ? H12A OLC 402 D 1 HETATM 43 H H7 OLC . . . O 3 18.549 -23.137 -41.838 1 81.63 ? H7 OLC 402 D 1 HETATM 44 H H7A OLC . . . O 3 16.925 -23.358 -42.397 1 81.63 ? H7A OLC 402 D 1 HETATM 45 H H15 OLC . . . O 3 19.616 -15.415 -46.359 1 103.5 ? H15 OLC 402 D 1 HETATM 46 H H15A OLC . . . O 3 19.179 -14.345 -45.072 1 103.5 ? H15A OLC 402 D 1 HETATM 47 H H13 OLC . . . O 3 17.702 -16.338 -43.831 1 100.15 ? H13 OLC 402 D 1 HETATM 48 H H13A OLC . . . O 3 18.772 -17.065 -44.976 1 100.15 ? H13A OLC 402 D 1 HETATM 49 H H6 OLC . . . O 3 18.677 -23.537 -44.709 1 89.73 ? H6 OLC 402 D 1 HETATM 50 H H6A OLC . . . O 3 19.343 -24.541 -43.468 1 89.73 ? H6A OLC 402 D 1 HETATM 51 H H14 OLC . . . O 3 16.74 -14.864 -45.442 1 98.79 ? H14 OLC 402 D 1 HETATM 52 H H14A OLC . . . O 3 17.147 -15.884 -46.781 1 98.79 ? H14A OLC 402 D 1 HETATM 53 H H5 OLC . . . O 3 16.403 -24.612 -44.32 1 81.71 ? H5 OLC 402 D 1 HETATM 54 H H5A OLC . . . O 3 17.603 -25.701 -44.926 1 81.71 ? H5A OLC 402 D 1 HETATM 55 H H4 OLC . . . O 3 18.079 -26.22 -42.356 1 77.54 ? H4 OLC 402 D 1 HETATM 56 H H4A OLC . . . O 3 16.528 -25.498 -42.089 1 77.54 ? H4A OLC 402 D 1 HETATM 57 H H3 OLC . . . O 3 17.157 -27.941 -43.815 1 93.86 ? H3 OLC 402 D 1 HETATM 58 H H3A OLC . . . O 3 16.125 -27.88 -42.429 1 93.86 ? H3A OLC 402 D 1 HETATM 59 H H2 OLC . . . O 3 14.766 -26.062 -43.924 1 100.1 ? H2 OLC 402 D 1 HETATM 60 H H2A OLC . . . O 3 15.552 -26.877 -45.235 1 100.1 ? H2A OLC 402 D 1 HETATM 61 H H21 OLC . . . O 3 13.46 -30.5 -43.154 1 108.51 ? H21 OLC 402 D 1 HETATM 62 H H21A OLC . . . O 3 14.709 -31.394 -43.986 1 108.51 ? H21A OLC 402 D 1 HETATM 63 H H22 OLC . . . O 3 13.781 -30.314 -46.231 1 110.41 ? H22 OLC 402 D 1 HETATM 64 H HO25 OLC . . . O 3 12.774 -31.904 -47.368 1 121.98 ? HO25 OLC 402 D 1 HETATM 65 H HO23 OLC . . . O 3 11.916 -29.427 -44.398 1 99.96 ? HO23 OLC 402 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #