data_5OGK
#
_model_server_result.job_id            BTgRzOe8-fNnjT0lAtNX0Q 
_model_server_result.datetime_utc      '2025-03-06 21:09:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ogk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":402}' 
#
_entry.id    5OGK 
#
_exptl.entry_id    5OGK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.86 
_cell.angle_beta          90.07 
_cell.angle_gamma         90.11 
_cell.entry_id            5OGK 
_cell.length_a            45.319 
_cell.length_b            101.694 
_cell.length_c            180.192 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K 1 1 
C,E,L,M,P,Q 2 1 
D,N,O 3 1 
F 3 2 
G,R,S 4 1 
H 4 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0.220146 -0.43987 -180.191329 
3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -0.220146 0.43987 180.191329 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 302 n n 
C10 C9 OLC doub 303 n n 
C10 C11 OLC sing 304 n n 
C9 C8 OLC sing 305 n n 
C17 C16 OLC sing 306 z n 
C11 C12 OLC sing 307 n n 
C8 C7 OLC sing 308 n n 
C24 C22 OLC sing 309 n n 
C24 O25 OLC sing 310 n n 
C16 C15 OLC sing 311 n n 
C12 C13 OLC sing 312 n n 
C7 C6 OLC sing 313 n n 
C15 C14 OLC sing 314 n n 
C13 C14 OLC sing 315 n n 
C6 C5 OLC sing 316 n n 
C5 C4 OLC sing 317 n n 
C4 C3 OLC sing 318 n n 
C3 C2 OLC sing 319 n n 
C2 C1 OLC sing 320 n n 
C21 C22 OLC sing 321 n n 
C21 O20 OLC sing 322 n n 
C1 O19 OLC doub 323 n n 
C1 O20 OLC sing 324 n n 
C22 O23 OLC sing 325 n n 
C18 H18 OLC sing 326 n n 
C18 H18A OLC sing 327 n n 
C18 H18B OLC sing 328 n n 
C10 H10 OLC sing 329 n n 
C9 H9 OLC sing 330 n n 
C17 H17 OLC sing 331 n n 
C17 H17A OLC sing 332 n n 
C11 H11 OLC sing 333 n n 
C11 H11A OLC sing 334 n n 
C8 H8 OLC sing 335 n n 
C8 H8A OLC sing 336 n n 
C24 H24 OLC sing 337 n n 
C24 H24A OLC sing 338 n n 
C16 H16 OLC sing 339 n n 
C16 H16A OLC sing 340 n n 
C12 H12 OLC sing 341 n n 
C12 H12A OLC sing 342 n n 
C7 H7 OLC sing 343 n n 
C7 H7A OLC sing 344 n n 
C15 H15 OLC sing 345 n n 
C15 H15A OLC sing 346 n n 
C13 H13 OLC sing 347 n n 
C13 H13A OLC sing 348 n n 
C6 H6 OLC sing 349 n n 
C6 H6A OLC sing 350 n n 
C14 H14 OLC sing 351 n n 
C14 H14A OLC sing 352 n n 
C5 H5 OLC sing 353 n n 
C5 H5A OLC sing 354 n n 
C4 H4 OLC sing 355 n n 
C4 H4A OLC sing 356 n n 
C3 H3 OLC sing 357 n n 
C3 H3A OLC sing 358 n n 
C2 H2 OLC sing 359 n n 
C2 H2A OLC sing 360 n n 
C21 H21 OLC sing 361 n n 
C21 H21A OLC sing 362 n n 
C22 H22 OLC sing 363 n n 
O25 HO25 OLC sing 364 n n 
O23 HO23 OLC sing 365 n n 
#
_atom_sites.entry_id                     5OGK 
_atom_sites.fract_transf_matrix[1][1]    0.022066 
_atom_sites.fract_transf_matrix[1][2]    0.000044 
_atom_sites.fract_transf_matrix[1][3]    0.000028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009833 
_atom_sites.fract_transf_matrix[2][3]    -0.000024 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00555 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GDD A 1 401 1 GDD GDD . 
J 3 OLC A 1 402 1 OLC OLC . 
K 3 OLC A 1 403 4 OLC OLC . 
L 3 OLC C 1 401 5 OLC OLC . 
M 3 OLC C 1 402 8 OLC OLC . 
N 2 GDD D 1 401 1 GDD GDD . 
O 3 OLC D 1 402 7 OLC OLC . 
P 2 GDD E 1 401 1 GDD GDD . 
Q 3 OLC E 1 402 6 OLC OLC . 
R 3 OLC G 1 401 2 OLC OLC . 
S 3 OLC G 1 402 3 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . Q 3 5.08 -18.516 27.204 1 83.63 ? C18 OLC 402 E 1 
HETATM 2 C C10 OLC . . . Q 3 3.552 -26.332 30.482 1 69.69 ? C10 OLC 402 E 1 
HETATM 3 C C9 OLC . . . Q 3 3.002 -27.53 30.261 1 61.91 ? C9 OLC 402 E 1 
HETATM 4 C C17 OLC . . . Q 3 4.767 -19.83 27.921 1 92.58 ? C17 OLC 402 E 1 
HETATM 5 C C11 OLC . . . Q 3 4.922 -26.073 31.055 1 66.86 ? C11 OLC 402 E 1 
HETATM 6 C C8 OLC . . . Q 3 3.651 -28.846 30.548 1 57.35 ? C8 OLC 402 E 1 
HETATM 7 C C24 OLC . . . Q 3 3.746 -41.531 32.052 1 98.77 ? C24 OLC 402 E 1 
HETATM 8 C C16 OLC . . . Q 3 5.663 -19.995 29.163 1 95.47 ? C16 OLC 402 E 1 
HETATM 9 C C12 OLC . . . Q 3 5.635 -24.989 30.228 1 64.73 ? C12 OLC 402 E 1 
HETATM 10 C C7 OLC . . . Q 3 3.159 -29.886 29.549 1 68.43 ? C7 OLC 402 E 1 
HETATM 11 C C15 OLC . . . Q 3 5.162 -21.129 30.082 1 86.51 ? C15 OLC 402 E 1 
HETATM 12 C C13 OLC . . . Q 3 5.107 -23.589 30.593 1 75.56 ? C13 OLC 402 E 1 
HETATM 13 C C6 OLC . . . Q 3 4.096 -31.097 29.617 1 74.85 ? C6 OLC 402 E 1 
HETATM 14 C C14 OLC . . . Q 3 5.602 -22.525 29.602 1 80.43 ? C14 OLC 402 E 1 
HETATM 15 C C5 OLC . . . Q 3 3.343 -32.406 29.348 1 83.47 ? C5 OLC 402 E 1 
HETATM 16 C C4 OLC . . . Q 3 3.807 -33.472 30.345 1 82.64 ? C4 OLC 402 E 1 
HETATM 17 C C3 OLC . . . Q 3 2.97 -34.746 30.192 1 87.82 ? C3 OLC 402 E 1 
HETATM 18 C C2 OLC . . . Q 3 3.096 -35.592 31.461 1 82.31 ? C2 OLC 402 E 1 
HETATM 19 C C21 OLC . . . Q 3 3.017 -39.276 31.215 1 84.78 ? C21 OLC 402 E 1 
HETATM 20 C C1 OLC . . . Q 3 2.464 -36.944 31.272 1 84.09 ? C1 OLC 402 E 1 
HETATM 21 C C22 OLC . . . Q 3 4.174 -40.044 31.91 1 89.44 ? C22 OLC 402 E 1 
HETATM 22 O O19 OLC . . . Q 3 1.291 -37.219 31.072 1 76.21 ? O19 OLC 402 E 1 
HETATM 23 O O25 OLC . . . Q 3 4.519 -42.014 33.113 1 96.89 ? O25 OLC 402 E 1 
HETATM 24 O O23 OLC . . . Q 3 5.35 -39.909 31.189 1 83.07 ? O23 OLC 402 E 1 
HETATM 25 O O20 OLC . . . Q 3 3.409 -37.924 31.359 1 86.15 ? O20 OLC 402 E 1 
HETATM 26 H H18 OLC . . . Q 3 4.46 -18.373 26.32 1 100.56 ? H18 OLC 402 E 1 
HETATM 27 H H18A OLC . . . Q 3 4.913 -17.655 27.849 1 100.56 ? H18A OLC 402 E 1 
HETATM 28 H H18B OLC . . . Q 3 6.117 -18.466 26.874 1 100.56 ? H18B OLC 402 E 1 
HETATM 29 H H10 OLC . . . Q 3 2.991 -25.431 30.238 1 83.83 ? H10 OLC 402 E 1 
HETATM 30 H H9 OLC . . . Q 3 2 -27.599 29.84 1 74.5 ? H9 OLC 402 E 1 
HETATM 31 H H17 OLC . . . Q 3 3.716 -19.859 28.204 1 111.3 ? H17 OLC 402 E 1 
HETATM 32 H H17A OLC . . . Q 3 4.901 -20.668 27.239 1 111.3 ? H17A OLC 402 E 1 
HETATM 33 H H11 OLC . . . Q 3 4.824 -25.76 32.093 1 80.44 ? H11 OLC 402 E 1 
HETATM 34 H H11A OLC . . . Q 3 5.52 -26.982 31.092 1 80.44 ? H11A OLC 402 E 1 
HETATM 35 H H8 OLC . . . Q 3 4.733 -28.733 30.49 1 69.03 ? H8 OLC 402 E 1 
HETATM 36 H H8A OLC . . . Q 3 3.458 -29.177 31.567 1 69.03 ? H8A OLC 402 E 1 
HETATM 37 H H24 OLC . . . Q 3 2.677 -41.6 32.249 1 118.73 ? H24 OLC 402 E 1 
HETATM 38 H H24A OLC . . . Q 3 3.926 -42.086 31.132 1 118.73 ? H24A OLC 402 E 1 
HETATM 39 H H16 OLC . . . Q 3 6.69 -20.188 28.856 1 114.77 ? H16 OLC 402 E 1 
HETATM 40 H H16A OLC . . . Q 3 5.707 -19.058 29.715 1 114.77 ? H16A OLC 402 E 1 
HETATM 41 H H12 OLC . . . Q 3 6.71 -25.043 30.395 1 77.88 ? H12 OLC 402 E 1 
HETATM 42 H H12A OLC . . . Q 3 5.501 -25.181 29.164 1 77.88 ? H12A OLC 402 E 1 
HETATM 43 H H7 OLC . . . Q 3 2.134 -30.174 29.778 1 82.33 ? H7 OLC 402 E 1 
HETATM 44 H H7A OLC . . . Q 3 3.134 -29.471 28.543 1 82.33 ? H7A OLC 402 E 1 
HETATM 45 H H15 OLC . . . Q 3 5.517 -20.962 31.098 1 104.02 ? H15 OLC 402 E 1 
HETATM 46 H H15A OLC . . . Q 3 4.076 -21.09 30.156 1 104.02 ? H15A OLC 402 E 1 
HETATM 47 H H13 OLC . . . Q 3 4.019 -23.597 30.622 1 90.88 ? H13 OLC 402 E 1 
HETATM 48 H H13A OLC . . . Q 3 5.413 -23.328 31.605 1 90.88 ? H13A OLC 402 E 1 
HETATM 49 H H6 OLC . . . Q 3 4.912 -30.981 28.904 1 90.03 ? H6 OLC 402 E 1 
HETATM 50 H H6A OLC . . . Q 3 4.582 -31.137 30.59 1 90.03 ? H6A OLC 402 E 1 
HETATM 51 H H14 OLC . . . Q 3 5.213 -22.725 28.605 1 96.72 ? H14 OLC 402 E 1 
HETATM 52 H H14A OLC . . . Q 3 6.685 -22.568 29.502 1 96.72 ? H14A OLC 402 E 1 
HETATM 53 H H5 OLC . . . Q 3 2.269 -32.25 29.432 1 100.37 ? H5 OLC 402 E 1 
HETATM 54 H H5A OLC . . . Q 3 3.51 -32.737 28.324 1 100.37 ? H5A OLC 402 E 1 
HETATM 55 H H4 OLC . . . Q 3 4.863 -33.692 30.2 1 99.37 ? H4 OLC 402 E 1 
HETATM 56 H H4A OLC . . . Q 3 3.735 -33.091 31.363 1 99.37 ? H4A OLC 402 E 1 
HETATM 57 H H3 OLC . . . Q 3 1.925 -34.503 30.005 1 105.6 ? H3 OLC 402 E 1 
HETATM 58 H H3A OLC . . . Q 3 3.292 -35.321 29.325 1 105.6 ? H3A OLC 402 E 1 
HETATM 59 H H2 OLC . . . Q 3 4.139 -35.725 31.744 1 98.97 ? H2 OLC 402 E 1 
HETATM 60 H H2A OLC . . . Q 3 2.633 -35.092 32.311 1 98.97 ? H2A OLC 402 E 1 
HETATM 61 H H21 OLC . . . Q 3 2.909 -39.55 30.167 1 101.94 ? H21 OLC 402 E 1 
HETATM 62 H H21A OLC . . . Q 3 2.059 -39.462 31.7 1 101.94 ? H21A OLC 402 E 1 
HETATM 63 H H22 OLC . . . Q 3 4.42 -39.61 32.879 1 107.54 ? H22 OLC 402 E 1 
HETATM 64 H HO25 OLC . . . Q 3 4.915 -42.874 32.814 1 116.48 ? HO25 OLC 402 E 1 
HETATM 65 H HO23 OLC . . . Q 3 5.521 -38.943 31.035 1 99.89 ? HO23 OLC 402 E 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           65 
#