data_5OGK
#
_model_server_result.job_id            1thWxLdh1fepT3IHjA7J-Q 
_model_server_result.datetime_utc      '2025-03-06 21:10:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ogk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":402}' 
#
_entry.id    5OGK 
#
_exptl.entry_id    5OGK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.86 
_cell.angle_beta          90.07 
_cell.angle_gamma         90.11 
_cell.entry_id            5OGK 
_cell.length_a            45.319 
_cell.length_b            101.694 
_cell.length_c            180.192 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K 1 1 
C,E,L,M,P,Q 2 1 
D,N,O 3 1 
F 3 2 
G,R,S 4 1 
H 4 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0.220146 -0.43987 -180.191329 
3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -0.220146 0.43987 180.191329 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 302 n n 
C10 C9 OLC doub 303 n n 
C10 C11 OLC sing 304 n n 
C9 C8 OLC sing 305 n n 
C17 C16 OLC sing 306 z n 
C11 C12 OLC sing 307 n n 
C8 C7 OLC sing 308 n n 
C24 C22 OLC sing 309 n n 
C24 O25 OLC sing 310 n n 
C16 C15 OLC sing 311 n n 
C12 C13 OLC sing 312 n n 
C7 C6 OLC sing 313 n n 
C15 C14 OLC sing 314 n n 
C13 C14 OLC sing 315 n n 
C6 C5 OLC sing 316 n n 
C5 C4 OLC sing 317 n n 
C4 C3 OLC sing 318 n n 
C3 C2 OLC sing 319 n n 
C2 C1 OLC sing 320 n n 
C21 C22 OLC sing 321 n n 
C21 O20 OLC sing 322 n n 
C1 O19 OLC doub 323 n n 
C1 O20 OLC sing 324 n n 
C22 O23 OLC sing 325 n n 
C18 H18 OLC sing 326 n n 
C18 H18A OLC sing 327 n n 
C18 H18B OLC sing 328 n n 
C10 H10 OLC sing 329 n n 
C9 H9 OLC sing 330 n n 
C17 H17 OLC sing 331 n n 
C17 H17A OLC sing 332 n n 
C11 H11 OLC sing 333 n n 
C11 H11A OLC sing 334 n n 
C8 H8 OLC sing 335 n n 
C8 H8A OLC sing 336 n n 
C24 H24 OLC sing 337 n n 
C24 H24A OLC sing 338 n n 
C16 H16 OLC sing 339 n n 
C16 H16A OLC sing 340 n n 
C12 H12 OLC sing 341 n n 
C12 H12A OLC sing 342 n n 
C7 H7 OLC sing 343 n n 
C7 H7A OLC sing 344 n n 
C15 H15 OLC sing 345 n n 
C15 H15A OLC sing 346 n n 
C13 H13 OLC sing 347 n n 
C13 H13A OLC sing 348 n n 
C6 H6 OLC sing 349 n n 
C6 H6A OLC sing 350 n n 
C14 H14 OLC sing 351 n n 
C14 H14A OLC sing 352 n n 
C5 H5 OLC sing 353 n n 
C5 H5A OLC sing 354 n n 
C4 H4 OLC sing 355 n n 
C4 H4A OLC sing 356 n n 
C3 H3 OLC sing 357 n n 
C3 H3A OLC sing 358 n n 
C2 H2 OLC sing 359 n n 
C2 H2A OLC sing 360 n n 
C21 H21 OLC sing 361 n n 
C21 H21A OLC sing 362 n n 
C22 H22 OLC sing 363 n n 
O25 HO25 OLC sing 364 n n 
O23 HO23 OLC sing 365 n n 
#
_atom_sites.entry_id                     5OGK 
_atom_sites.fract_transf_matrix[1][1]    0.022066 
_atom_sites.fract_transf_matrix[1][2]    0.000044 
_atom_sites.fract_transf_matrix[1][3]    0.000028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009833 
_atom_sites.fract_transf_matrix[2][3]    -0.000024 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00555 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GDD A 1 401 1 GDD GDD . 
J 3 OLC A 1 402 1 OLC OLC . 
K 3 OLC A 1 403 4 OLC OLC . 
L 3 OLC C 1 401 5 OLC OLC . 
M 3 OLC C 1 402 8 OLC OLC . 
N 2 GDD D 1 401 1 GDD GDD . 
O 3 OLC D 1 402 7 OLC OLC . 
P 2 GDD E 1 401 1 GDD GDD . 
Q 3 OLC E 1 402 6 OLC OLC . 
R 3 OLC G 1 401 2 OLC OLC . 
S 3 OLC G 1 402 3 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . S 3 5.567 29.055 147.402 1 45.82 ? C18 OLC 402 G 1 
HETATM 2 C C10 OLC . . . S 3 3.29 38.208 149.992 1 74.66 ? C10 OLC 402 G 1 
HETATM 3 C C9 OLC . . . S 3 2.454 39.244 149.755 1 73.73 ? C9 OLC 402 G 1 
HETATM 4 C C17 OLC . . . S 3 5.531 30.361 148.195 1 58.05 ? C17 OLC 402 G 1 
HETATM 5 C C11 OLC . . . S 3 4.18 37.5 149.006 1 74.65 ? C11 OLC 402 G 1 
HETATM 6 C C8 OLC . . . S 3 2.203 39.948 148.445 1 79.03 ? C8 OLC 402 G 1 
HETATM 7 C C24 OLC . . . S 3 4.141 52.037 149.429 1 109.04 ? C24 OLC 402 G 1 
HETATM 8 C C16 OLC . . . S 3 4.696 31.437 147.475 1 62.44 ? C16 OLC 402 G 1 
HETATM 9 C C12 OLC . . . S 3 3.731 36.032 148.844 1 76.09 ? C12 OLC 402 G 1 
HETATM 10 C C7 OLC . . . S 3 2.707 41.411 148.524 1 79.52 ? C7 OLC 402 G 1 
HETATM 11 C C15 OLC . . . S 3 4.988 32.834 148.06 1 60.4 ? C15 OLC 402 G 1 
HETATM 12 C C13 OLC . . . S 3 4.554 35.328 147.747 1 64.74 ? C13 OLC 402 G 1 
HETATM 13 C C6 OLC . . . S 3 1.633 42.443 148.105 1 76.85 ? C6 OLC 402 G 1 
HETATM 14 C C14 OLC . . . S 3 4.041 33.899 147.473 1 56.02 ? C14 OLC 402 G 1 
HETATM 15 C C5 OLC . . . S 3 2.133 43.37 146.973 1 83.61 ? C5 OLC 402 G 1 
HETATM 16 C C4 OLC . . . S 3 2.936 44.587 147.478 1 92.35 ? C4 OLC 402 G 1 
HETATM 17 C C3 OLC . . . S 3 3.143 45.58 146.316 1 87.45 ? C3 OLC 402 G 1 
HETATM 18 C C2 OLC . . . S 3 4.025 46.781 146.712 1 89.7 ? C2 OLC 402 G 1 
HETATM 19 C C21 OLC . . . S 3 3.202 49.778 148.778 1 128.52 ? C21 OLC 402 G 1 
HETATM 20 C C1 OLC . . . S 3 3.204 47.955 147.187 1 110.21 ? C1 OLC 402 G 1 
HETATM 21 C C22 OLC . . . S 3 4.322 50.496 149.609 1 114.57 ? C22 OLC 402 G 1 
HETATM 22 O O19 OLC . . . S 3 2.122 48.335 146.772 1 119.16 ? O19 OLC 402 G 1 
HETATM 23 O O25 OLC . . . S 3 2.774 52.275 149.618 1 107.14 ? O25 OLC 402 G 1 
HETATM 24 O O23 OLC . . . S 3 4.306 50.124 150.95 1 112.37 ? O23 OLC 402 G 1 
HETATM 25 O O20 OLC . . . S 3 3.835 48.63 148.208 1 122.85 ? O20 OLC 402 G 1 
HETATM 26 H H18 OLC . . . S 3 6.004 29.187 146.413 1 55.2 ? H18 OLC 402 G 1 
HETATM 27 H H18A OLC . . . S 3 6.158 28.293 147.908 1 55.2 ? H18A OLC 402 G 1 
HETATM 28 H H18B OLC . . . S 3 4.573 28.636 147.256 1 55.2 ? H18B OLC 402 G 1 
HETATM 29 H H10 OLC . . . S 3 3.356 37.807 151.002 1 89.8 ? H10 OLC 402 G 1 
HETATM 30 H H9 OLC . . . S 3 1.875 39.649 150.583 1 88.68 ? H9 OLC 402 G 1 
HETATM 31 H H17 OLC . . . S 3 5.13 30.177 149.191 1 69.86 ? H17 OLC 402 G 1 
HETATM 32 H H17A OLC . . . S 3 6.545 30.719 148.361 1 69.86 ? H17A OLC 402 G 1 
HETATM 33 H H11 OLC . . . S 3 4.139 38.019 148.049 1 89.79 ? H11 OLC 402 G 1 
HETATM 34 H H11A OLC . . . S 3 5.225 37.549 149.305 1 89.79 ? H11A OLC 402 G 1 
HETATM 35 H H8 OLC . . . S 3 2.711 39.409 147.647 1 95.04 ? H8 OLC 402 G 1 
HETATM 36 H H8A OLC . . . S 3 1.15 39.923 148.169 1 95.04 ? H8A OLC 402 G 1 
HETATM 37 H H24 OLC . . . S 3 4.757 52.574 150.149 1 131.06 ? H24 OLC 402 G 1 
HETATM 38 H H24A OLC . . . S 3 4.474 52.361 148.444 1 131.06 ? H24A OLC 402 G 1 
HETATM 39 H H16 OLC . . . S 3 3.635 31.206 147.558 1 75.14 ? H16 OLC 402 G 1 
HETATM 40 H H16A OLC . . . S 3 4.905 31.422 146.406 1 75.14 ? H16A OLC 402 G 1 
HETATM 41 H H12 OLC . . . S 3 3.836 35.506 149.791 1 91.52 ? H12 OLC 402 G 1 
HETATM 42 H H12A OLC . . . S 3 2.668 35.988 148.61 1 91.52 ? H12A OLC 402 G 1 
HETATM 43 H H7 OLC . . . S 3 3.048 41.621 149.536 1 95.63 ? H7 OLC 402 G 1 
HETATM 44 H H7A OLC . . . S 3 3.592 41.527 147.901 1 95.63 ? H7A OLC 402 G 1 
HETATM 45 H H15 OLC . . . S 3 4.893 32.811 149.145 1 72.68 ? H15 OLC 402 G 1 
HETATM 46 H H15A OLC . . . S 3 6.025 33.11 147.874 1 72.68 ? H15A OLC 402 G 1 
HETATM 47 H H13 OLC . . . S 3 4.529 35.915 146.83 1 77.9 ? H13 OLC 402 G 1 
HETATM 48 H H13A OLC . . . S 3 5.604 35.299 148.032 1 77.9 ? H13A OLC 402 G 1 
HETATM 49 H H6 OLC . . . S 3 0.725 41.93 147.791 1 92.42 ? H6 OLC 402 G 1 
HETATM 50 H H6A OLC . . . S 3 1.33 43.034 148.968 1 92.42 ? H6A OLC 402 G 1 
HETATM 51 H H14 OLC . . . S 3 3.924 33.744 146.402 1 67.43 ? H14 OLC 402 G 1 
HETATM 52 H H14A OLC . . . S 3 3.042 33.773 147.887 1 67.43 ? H14A OLC 402 G 1 
HETATM 53 H H5 OLC . . . S 3 2.742 42.797 146.275 1 100.54 ? H5 OLC 402 G 1 
HETATM 54 H H5A OLC . . . S 3 1.284 43.711 146.383 1 100.54 ? H5A OLC 402 G 1 
HETATM 55 H H4 OLC . . . S 3 2.417 45.069 148.306 1 111.03 ? H4 OLC 402 G 1 
HETATM 56 H H4A OLC . . . S 3 3.894 44.269 147.889 1 111.03 ? H4A OLC 402 G 1 
HETATM 57 H H3 OLC . . . S 3 3.585 45.07 145.461 1 105.15 ? H3 OLC 402 G 1 
HETATM 58 H H3A OLC . . . S 3 2.181 45.942 145.956 1 105.15 ? H3A OLC 402 G 1 
HETATM 59 H H2 OLC . . . S 3 4.728 46.506 147.497 1 107.85 ? H2 OLC 402 G 1 
HETATM 60 H H2A OLC . . . S 3 4.648 47.096 145.876 1 107.85 ? H2A OLC 402 G 1 
HETATM 61 H H21 OLC . . . S 3 2.358 49.488 149.402 1 154.43 ? H21 OLC 402 G 1 
HETATM 62 H H21A OLC . . . S 3 2.809 50.429 147.998 1 154.43 ? H21A OLC 402 G 1 
HETATM 63 H H22 OLC . . . S 3 5.314 50.185 149.283 1 137.69 ? H22 OLC 402 G 1 
HETATM 64 H HO25 OLC . . . S 3 2.54 51.916 150.513 1 128.77 ? HO25 OLC 402 G 1 
HETATM 65 H HO23 OLC . . . S 3 3.366 49.958 151.224 1 135.05 ? HO23 OLC 402 G 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           65 
#