data_5OGK # _model_server_result.job_id aoxXTRuAKdUZMS2LjJnSeA _model_server_result.datetime_utc '2024-10-28 02:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ogk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 5OGK # _exptl.entry_id 5OGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.86 _cell.angle_beta 90.07 _cell.angle_gamma 90.11 _cell.entry_id 5OGK _cell.length_a 45.319 _cell.length_b 101.694 _cell.length_c 180.192 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K 1 1 C,E,L,M,P,Q 2 1 D,N,O 3 1 F 3 2 G,R,S 4 1 H 4 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0.220146 -0.43987 -180.191329 3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -0.220146 0.43987 180.191329 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 S N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 302 n n C10 C9 OLC doub 303 n n C10 C11 OLC sing 304 n n C9 C8 OLC sing 305 n n C17 C16 OLC sing 306 z n C11 C12 OLC sing 307 n n C8 C7 OLC sing 308 n n C24 C22 OLC sing 309 n n C24 O25 OLC sing 310 n n C16 C15 OLC sing 311 n n C12 C13 OLC sing 312 n n C7 C6 OLC sing 313 n n C15 C14 OLC sing 314 n n C13 C14 OLC sing 315 n n C6 C5 OLC sing 316 n n C5 C4 OLC sing 317 n n C4 C3 OLC sing 318 n n C3 C2 OLC sing 319 n n C2 C1 OLC sing 320 n n C21 C22 OLC sing 321 n n C21 O20 OLC sing 322 n n C1 O19 OLC doub 323 n n C1 O20 OLC sing 324 n n C22 O23 OLC sing 325 n n C18 H18 OLC sing 326 n n C18 H18A OLC sing 327 n n C18 H18B OLC sing 328 n n C10 H10 OLC sing 329 n n C9 H9 OLC sing 330 n n C17 H17 OLC sing 331 n n C17 H17A OLC sing 332 n n C11 H11 OLC sing 333 n n C11 H11A OLC sing 334 n n C8 H8 OLC sing 335 n n C8 H8A OLC sing 336 n n C24 H24 OLC sing 337 n n C24 H24A OLC sing 338 n n C16 H16 OLC sing 339 n n C16 H16A OLC sing 340 n n C12 H12 OLC sing 341 n n C12 H12A OLC sing 342 n n C7 H7 OLC sing 343 n n C7 H7A OLC sing 344 n n C15 H15 OLC sing 345 n n C15 H15A OLC sing 346 n n C13 H13 OLC sing 347 n n C13 H13A OLC sing 348 n n C6 H6 OLC sing 349 n n C6 H6A OLC sing 350 n n C14 H14 OLC sing 351 n n C14 H14A OLC sing 352 n n C5 H5 OLC sing 353 n n C5 H5A OLC sing 354 n n C4 H4 OLC sing 355 n n C4 H4A OLC sing 356 n n C3 H3 OLC sing 357 n n C3 H3A OLC sing 358 n n C2 H2 OLC sing 359 n n C2 H2A OLC sing 360 n n C21 H21 OLC sing 361 n n C21 H21A OLC sing 362 n n C22 H22 OLC sing 363 n n O25 HO25 OLC sing 364 n n O23 HO23 OLC sing 365 n n # _atom_sites.entry_id 5OGK _atom_sites.fract_transf_matrix[1][1] 0.022066 _atom_sites.fract_transf_matrix[1][2] 0.000044 _atom_sites.fract_transf_matrix[1][3] 0.000028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009833 _atom_sites.fract_transf_matrix[2][3] -0.000024 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GDD A 1 401 1 GDD GDD . J 3 OLC A 1 402 1 OLC OLC . K 3 OLC A 1 403 4 OLC OLC . L 3 OLC C 1 401 5 OLC OLC . M 3 OLC C 1 402 8 OLC OLC . N 2 GDD D 1 401 1 GDD GDD . O 3 OLC D 1 402 7 OLC OLC . P 2 GDD E 1 401 1 GDD GDD . Q 3 OLC E 1 402 6 OLC OLC . R 3 OLC G 1 401 2 OLC OLC . S 3 OLC G 1 402 3 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . K 3 -14.339 32.066 42.789 1 71.72 ? C18 OLC 403 A 1 HETATM 2 C C10 OLC . . . K 3 -12.39 23.585 46.135 1 65.78 ? C10 OLC 403 A 1 HETATM 3 C C9 OLC . . . K 3 -12.301 22.261 46.291 1 67.3 ? C9 OLC 403 A 1 HETATM 4 C C17 OLC . . . K 3 -14.271 30.658 43.368 1 70.88 ? C17 OLC 403 A 1 HETATM 5 C C11 OLC . . . K 3 -13.381 24.224 45.216 1 65.81 ? C11 OLC 403 A 1 HETATM 6 C C8 OLC . . . K 3 -13.183 21.297 45.555 1 81.31 ? C8 OLC 403 A 1 HETATM 7 C C24 OLC . . . K 3 -12.794 11.13 47.891 1 75.37 ? C24 OLC 403 A 1 HETATM 8 C C16 OLC . . . K 3 -14.891 29.64 42.406 1 71.36 ? C16 OLC 403 A 1 HETATM 9 C C12 OLC . . . K 3 -13.192 25.741 45.155 1 56.67 ? C12 OLC 403 A 1 HETATM 10 C C7 OLC . . . K 3 -12.819 19.839 45.886 1 76.79 ? C7 OLC 403 A 1 HETATM 11 C C15 OLC . . . K 3 -15.239 28.339 43.143 1 71.63 ? C15 OLC 403 A 1 HETATM 12 C C13 OLC . . . K 3 -14.303 26.317 44.273 1 59.52 ? C13 OLC 403 A 1 HETATM 13 C C6 OLC . . . K 3 -13.742 18.881 45.106 1 79.55 ? C6 OLC 403 A 1 HETATM 14 C C14 OLC . . . K 3 -14.037 27.782 43.922 1 65.42 ? C14 OLC 403 A 1 HETATM 15 C C5 OLC . . . K 3 -13.545 17.422 45.551 1 71.34 ? C5 OLC 403 A 1 HETATM 16 C C4 OLC . . . K 3 -14.554 16.5 44.847 1 81.22 ? C4 OLC 403 A 1 HETATM 17 C C3 OLC . . . K 3 -14.313 15.032 45.232 1 88.1 ? C3 OLC 403 A 1 HETATM 18 C C2 OLC . . . K 3 -15.408 14.145 44.628 1 93.43 ? C2 OLC 403 A 1 HETATM 19 C C21 OLC . . . K 3 -13.705 10.958 45.54 1 87.84 ? C21 OLC 403 A 1 HETATM 20 C C1 OLC . . . K 3 -14.949 12.711 44.512 1 92.54 ? C1 OLC 403 A 1 HETATM 21 C C22 OLC . . . K 3 -12.407 10.924 46.4 1 81.64 ? C22 OLC 403 A 1 HETATM 22 O O19 OLC . . . K 3 -15.193 11.933 43.604 1 90.46 ? O19 OLC 403 A 1 HETATM 23 O O25 OLC . . . K 3 -11.576 11.055 48.581 1 69.51 ? O25 OLC 403 A 1 HETATM 24 O O23 OLC . . . K 3 -11.72 9.737 46.207 1 73.98 ? O23 OLC 403 A 1 HETATM 25 O O20 OLC . . . K 3 -14.174 12.305 45.57 1 88 ? O20 OLC 403 A 1 HETATM 26 H H18 OLC . . . K 3 -13.806 32.148 41.843 1 86.27 ? H18 OLC 403 A 1 HETATM 27 H H18A OLC . . . K 3 -15.366 32.374 42.599 1 86.27 ? H18A OLC 403 A 1 HETATM 28 H H18B OLC . . . K 3 -13.908 32.807 43.461 1 86.27 ? H18B OLC 403 A 1 HETATM 29 H H10 OLC . . . K 3 -11.735 24.265 46.678 1 79.14 ? H10 OLC 403 A 1 HETATM 30 H H9 OLC . . . K 3 -11.573 21.82 46.97 1 80.97 ? H9 OLC 403 A 1 HETATM 31 H H17 OLC . . . K 3 -13.237 30.394 43.585 1 85.27 ? H17 OLC 403 A 1 HETATM 32 H H17A OLC . . . K 3 -14.779 30.628 44.331 1 85.27 ? H17A OLC 403 A 1 HETATM 33 H H11 OLC . . . K 3 -13.276 23.789 44.223 1 79.18 ? H11 OLC 403 A 1 HETATM 34 H H11A OLC . . . K 3 -14.401 23.986 45.513 1 79.18 ? H11A OLC 403 A 1 HETATM 35 H H8 OLC . . . K 3 -14.221 21.499 45.814 1 97.78 ? H8 OLC 403 A 1 HETATM 36 H H8A OLC . . . K 3 -13.133 21.457 44.479 1 97.78 ? H8A OLC 403 A 1 HETATM 37 H H24 OLC . . . K 3 -13.289 12.091 48.023 1 90.65 ? H24 OLC 403 A 1 HETATM 38 H H24A OLC . . . K 3 -13.5 10.372 48.228 1 90.65 ? H24A OLC 403 A 1 HETATM 39 H H16 OLC . . . K 3 -15.78 30.06 41.938 1 85.84 ? H16 OLC 403 A 1 HETATM 40 H H16A OLC . . . K 3 -14.206 29.438 41.583 1 85.84 ? H16A OLC 403 A 1 HETATM 41 H H12 OLC . . . K 3 -13.229 26.169 46.155 1 68.22 ? H12 OLC 403 A 1 HETATM 42 H H12A OLC . . . K 3 -12.208 25.992 44.761 1 68.22 ? H12A OLC 403 A 1 HETATM 43 H H7 OLC . . . K 3 -11.776 19.651 45.638 1 92.36 ? H7 OLC 403 A 1 HETATM 44 H H7A OLC . . . K 3 -12.901 19.662 46.957 1 92.36 ? H7A OLC 403 A 1 HETATM 45 H H15 OLC . . . K 3 -16.073 28.509 43.823 1 86.17 ? H15 OLC 403 A 1 HETATM 46 H H15A OLC . . . K 3 -15.6 27.595 42.435 1 86.17 ? H15A OLC 403 A 1 HETATM 47 H H13 OLC . . . K 3 -14.402 25.726 43.364 1 71.63 ? H13 OLC 403 A 1 HETATM 48 H H13A OLC . . . K 3 -15.263 26.222 44.777 1 71.63 ? H13A OLC 403 A 1 HETATM 49 H H6 OLC . . . K 3 -14.783 19.174 45.237 1 95.66 ? H6 OLC 403 A 1 HETATM 50 H H6A OLC . . . K 3 -13.561 18.977 44.037 1 95.66 ? H6A OLC 403 A 1 HETATM 51 H H14 OLC . . . K 3 -13.125 27.875 43.335 1 78.71 ? H14 OLC 403 A 1 HETATM 52 H H14A OLC . . . K 3 -13.863 28.369 44.823 1 78.71 ? H14A OLC 403 A 1 HETATM 53 H H5 OLC . . . K 3 -12.528 17.098 45.334 1 85.81 ? H5 OLC 403 A 1 HETATM 54 H H5A OLC . . . K 3 -13.645 17.342 46.632 1 85.81 ? H5A OLC 403 A 1 HETATM 55 H H4 OLC . . . K 3 -15.572 16.795 45.1 1 97.67 ? H4 OLC 403 A 1 HETATM 56 H H4A OLC . . . K 3 -14.486 16.625 43.768 1 97.67 ? H4A OLC 403 A 1 HETATM 57 H H3 OLC . . . K 3 -13.334 14.701 44.889 1 105.93 ? H3 OLC 403 A 1 HETATM 58 H H3A OLC . . . K 3 -14.292 14.914 46.314 1 105.93 ? H3A OLC 403 A 1 HETATM 59 H H2 OLC . . . K 3 -16.315 14.177 45.23 1 112.32 ? H2 OLC 403 A 1 HETATM 60 H H2A OLC . . . K 3 -15.707 14.508 43.646 1 112.32 ? H2A OLC 403 A 1 HETATM 61 H H21 OLC . . . K 3 -13.517 10.638 44.516 1 105.62 ? H21 OLC 403 A 1 HETATM 62 H H21A OLC . . . K 3 -14.459 10.283 45.943 1 105.62 ? H21A OLC 403 A 1 HETATM 63 H H22 OLC . . . K 3 -11.693 11.679 46.074 1 98.18 ? H22 OLC 403 A 1 HETATM 64 H HO25 OLC . . . K 3 -10.96 10.514 48.021 1 83.62 ? HO25 OLC 403 A 1 HETATM 65 H HO23 OLC . . . K 3 -12.341 9.071 45.811 1 88.99 ? HO23 OLC 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #