data_5OGS # _model_server_result.job_id vSKXea66Dz0ywm2XgdNdKw _model_server_result.datetime_utc '2025-09-30 09:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ogs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5OGS # _exptl.entry_id 5OGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OGS _cell.length_a 249.712 _cell.length_b 249.712 _cell.length_c 249.712 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 5OGS _atom_sites.fract_transf_matrix[1][1] 0.004005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 901 1 MLI MLI . C 2 MLI A 1 902 2 MLI MLI . D 3 HOH A 1 1001 63 HOH HOH . D 3 HOH A 2 1002 156 HOH HOH . D 3 HOH A 3 1003 164 HOH HOH . D 3 HOH A 4 1004 165 HOH HOH . D 3 HOH A 5 1005 77 HOH HOH . D 3 HOH A 6 1006 101 HOH HOH . D 3 HOH A 7 1007 28 HOH HOH . D 3 HOH A 8 1008 85 HOH HOH . D 3 HOH A 9 1009 20 HOH HOH . D 3 HOH A 10 1010 88 HOH HOH . D 3 HOH A 11 1011 46 HOH HOH . D 3 HOH A 12 1012 78 HOH HOH . D 3 HOH A 13 1013 139 HOH HOH . D 3 HOH A 14 1014 111 HOH HOH . D 3 HOH A 15 1015 68 HOH HOH . D 3 HOH A 16 1016 124 HOH HOH . D 3 HOH A 17 1017 159 HOH HOH . D 3 HOH A 18 1018 71 HOH HOH . D 3 HOH A 19 1019 99 HOH HOH . D 3 HOH A 20 1020 19 HOH HOH . D 3 HOH A 21 1021 23 HOH HOH . D 3 HOH A 22 1022 163 HOH HOH . D 3 HOH A 23 1023 53 HOH HOH . D 3 HOH A 24 1024 126 HOH HOH . D 3 HOH A 25 1025 134 HOH HOH . D 3 HOH A 26 1026 160 HOH HOH . D 3 HOH A 27 1027 61 HOH HOH . D 3 HOH A 28 1028 42 HOH HOH . D 3 HOH A 29 1029 102 HOH HOH . D 3 HOH A 30 1030 136 HOH HOH . D 3 HOH A 31 1031 18 HOH HOH . D 3 HOH A 32 1032 70 HOH HOH . D 3 HOH A 33 1033 93 HOH HOH . D 3 HOH A 34 1034 44 HOH HOH . D 3 HOH A 35 1035 29 HOH HOH . D 3 HOH A 36 1036 83 HOH HOH . D 3 HOH A 37 1037 121 HOH HOH . D 3 HOH A 38 1038 15 HOH HOH . D 3 HOH A 39 1039 106 HOH HOH . D 3 HOH A 40 1040 141 HOH HOH . D 3 HOH A 41 1041 73 HOH HOH . D 3 HOH A 42 1042 9 HOH HOH . D 3 HOH A 43 1043 117 HOH HOH . D 3 HOH A 44 1044 57 HOH HOH . D 3 HOH A 45 1045 50 HOH HOH . D 3 HOH A 46 1046 47 HOH HOH . D 3 HOH A 47 1047 1 HOH HOH . D 3 HOH A 48 1048 41 HOH HOH . D 3 HOH A 49 1049 80 HOH HOH . D 3 HOH A 50 1050 5 HOH HOH . D 3 HOH A 51 1051 79 HOH HOH . D 3 HOH A 52 1052 4 HOH HOH . D 3 HOH A 53 1053 11 HOH HOH . D 3 HOH A 54 1054 6 HOH HOH . D 3 HOH A 55 1055 39 HOH HOH . D 3 HOH A 56 1056 105 HOH HOH . D 3 HOH A 57 1057 107 HOH HOH . D 3 HOH A 58 1058 147 HOH HOH . D 3 HOH A 59 1059 10 HOH HOH . D 3 HOH A 60 1060 67 HOH HOH . D 3 HOH A 61 1061 21 HOH HOH . D 3 HOH A 62 1062 87 HOH HOH . D 3 HOH A 63 1063 22 HOH HOH . D 3 HOH A 64 1064 81 HOH HOH . D 3 HOH A 65 1065 109 HOH HOH . D 3 HOH A 66 1066 129 HOH HOH . D 3 HOH A 67 1067 116 HOH HOH . D 3 HOH A 68 1068 14 HOH HOH . D 3 HOH A 69 1069 97 HOH HOH . D 3 HOH A 70 1070 166 HOH HOH . D 3 HOH A 71 1071 64 HOH HOH . D 3 HOH A 72 1072 138 HOH HOH . D 3 HOH A 73 1073 43 HOH HOH . D 3 HOH A 74 1074 110 HOH HOH . D 3 HOH A 75 1075 100 HOH HOH . D 3 HOH A 76 1076 150 HOH HOH . D 3 HOH A 77 1077 62 HOH HOH . D 3 HOH A 78 1078 31 HOH HOH . D 3 HOH A 79 1079 13 HOH HOH . D 3 HOH A 80 1080 140 HOH HOH . D 3 HOH A 81 1081 12 HOH HOH . D 3 HOH A 82 1082 3 HOH HOH . D 3 HOH A 83 1083 25 HOH HOH . D 3 HOH A 84 1084 26 HOH HOH . D 3 HOH A 85 1085 54 HOH HOH . D 3 HOH A 86 1086 82 HOH HOH . D 3 HOH A 87 1087 55 HOH HOH . D 3 HOH A 88 1088 154 HOH HOH . D 3 HOH A 89 1089 66 HOH HOH . D 3 HOH A 90 1090 96 HOH HOH . D 3 HOH A 91 1091 143 HOH HOH . D 3 HOH A 92 1092 16 HOH HOH . D 3 HOH A 93 1093 103 HOH HOH . D 3 HOH A 94 1094 127 HOH HOH . D 3 HOH A 95 1095 74 HOH HOH . D 3 HOH A 96 1096 8 HOH HOH . D 3 HOH A 97 1097 35 HOH HOH . D 3 HOH A 98 1098 58 HOH HOH . D 3 HOH A 99 1099 38 HOH HOH . D 3 HOH A 100 1100 137 HOH HOH . D 3 HOH A 101 1101 91 HOH HOH . D 3 HOH A 102 1102 75 HOH HOH . D 3 HOH A 103 1103 34 HOH HOH . D 3 HOH A 104 1104 17 HOH HOH . D 3 HOH A 105 1105 90 HOH HOH . D 3 HOH A 106 1106 33 HOH HOH . D 3 HOH A 107 1107 65 HOH HOH . D 3 HOH A 108 1108 112 HOH HOH . D 3 HOH A 109 1109 45 HOH HOH . D 3 HOH A 110 1110 120 HOH HOH . D 3 HOH A 111 1111 24 HOH HOH . D 3 HOH A 112 1112 32 HOH HOH . D 3 HOH A 113 1113 133 HOH HOH . D 3 HOH A 114 1114 36 HOH HOH . D 3 HOH A 115 1115 128 HOH HOH . D 3 HOH A 116 1116 144 HOH HOH . D 3 HOH A 117 1117 27 HOH HOH . D 3 HOH A 118 1118 125 HOH HOH . D 3 HOH A 119 1119 86 HOH HOH . D 3 HOH A 120 1120 48 HOH HOH . D 3 HOH A 121 1121 98 HOH HOH . D 3 HOH A 122 1122 145 HOH HOH . D 3 HOH A 123 1123 7 HOH HOH . D 3 HOH A 124 1124 135 HOH HOH . D 3 HOH A 125 1125 155 HOH HOH . D 3 HOH A 126 1126 148 HOH HOH . D 3 HOH A 127 1127 37 HOH HOH . D 3 HOH A 128 1128 30 HOH HOH . D 3 HOH A 129 1129 132 HOH HOH . D 3 HOH A 130 1130 104 HOH HOH . D 3 HOH A 131 1131 161 HOH HOH . D 3 HOH A 132 1132 162 HOH HOH . D 3 HOH A 133 1133 142 HOH HOH . D 3 HOH A 134 1134 152 HOH HOH . D 3 HOH A 135 1135 130 HOH HOH . D 3 HOH A 136 1136 89 HOH HOH . D 3 HOH A 137 1137 72 HOH HOH . D 3 HOH A 138 1138 157 HOH HOH . D 3 HOH A 139 1139 131 HOH HOH . D 3 HOH A 140 1140 118 HOH HOH . D 3 HOH A 141 1141 119 HOH HOH . D 3 HOH A 142 1142 95 HOH HOH . D 3 HOH A 143 1143 146 HOH HOH . D 3 HOH A 144 1144 2 HOH HOH . D 3 HOH A 145 1145 113 HOH HOH . D 3 HOH A 146 1146 76 HOH HOH . D 3 HOH A 147 1147 94 HOH HOH . D 3 HOH A 148 1148 69 HOH HOH . D 3 HOH A 149 1149 123 HOH HOH . D 3 HOH A 150 1150 153 HOH HOH . D 3 HOH A 151 1151 60 HOH HOH . D 3 HOH A 152 1152 84 HOH HOH . D 3 HOH A 153 1153 151 HOH HOH . D 3 HOH A 154 1154 49 HOH HOH . D 3 HOH A 155 1155 108 HOH HOH . D 3 HOH A 156 1156 51 HOH HOH . D 3 HOH A 157 1157 40 HOH HOH . D 3 HOH A 158 1158 92 HOH HOH . D 3 HOH A 159 1159 59 HOH HOH . D 3 HOH A 160 1160 52 HOH HOH . D 3 HOH A 161 1161 114 HOH HOH . D 3 HOH A 162 1162 122 HOH HOH . D 3 HOH A 163 1163 149 HOH HOH . D 3 HOH A 164 1164 158 HOH HOH . D 3 HOH A 165 1165 56 HOH HOH . D 3 HOH A 166 1166 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 2 73.169 75.592 118.915 1 72.67 ? C1 MLI 902 A 1 HETATM 2 C C2 MLI . . . C 2 72.048 74.582 118.684 1 64.74 ? C2 MLI 902 A 1 HETATM 3 C C3 MLI . . . C 2 74.087 75.626 117.695 1 76.99 ? C3 MLI 902 A 1 HETATM 4 O O6 MLI . . . C 2 71.411 74.591 117.599 1 68.77 ? O6 MLI 902 A 1 HETATM 5 O O7 MLI . . . C 2 71.76 73.745 119.58 1 69.66 ? O7 MLI 902 A 1 HETATM 6 O O8 MLI . . . C 2 74.164 74.624 116.937 1 85.7 ? O8 MLI 902 A 1 HETATM 7 O O9 MLI . . . C 2 74.768 76.657 117.447 1 81.95 ? O9 MLI 902 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #