data_5OGW
#
_model_server_result.job_id            btBZSpXUzKHVuGegEBUE2g 
_model_server_result.datetime_utc      '2025-02-18 20:01:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ogw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    5OGW 
#
_exptl.entry_id    5OGW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OGW 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OGW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 I N N 
? 2 K N N 
? 2 N N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2B ADP . A ADP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc2 F O3B ADP . A ADP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc3 I O2B ADP . B ADP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 I O3B ADP . B ADP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc5 K O2B ADP . C ADP 401 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc6 K O3B ADP . C ADP 401 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc7 N O2B ADP . D ADP 401 1_555 O MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc8 N O3B ADP . D ADP 401 1_555 O MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc9 P O2B ADP . E ADP 401 1_555 Q MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc10 P O3B ADP . E ADP 401 1_555 Q MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 96 n n 
PB O2B ADP sing 97 n n 
PB O3B ADP sing 98 n n 
PB O3A ADP sing 99 n n 
O2B HOB2 ADP sing 100 n n 
O3B HOB3 ADP sing 101 n n 
PA O1A ADP doub 102 n n 
PA O2A ADP sing 103 n n 
PA O3A ADP sing 104 n n 
PA O5' ADP sing 105 n n 
O2A HOA2 ADP sing 106 n n 
O5' C5' ADP sing 107 n n 
C5' C4' ADP sing 108 n n 
C5' "H5'1" ADP sing 109 n n 
C5' "H5'2" ADP sing 110 n n 
C4' O4' ADP sing 111 n n 
C4' C3' ADP sing 112 n n 
C4' H4' ADP sing 113 n n 
O4' C1' ADP sing 114 n n 
C3' O3' ADP sing 115 n n 
C3' C2' ADP sing 116 n n 
C3' H3' ADP sing 117 n n 
O3' HO3' ADP sing 118 n n 
C2' O2' ADP sing 119 n n 
C2' C1' ADP sing 120 n n 
C2' H2' ADP sing 121 n n 
O2' HO2' ADP sing 122 n n 
C1' N9 ADP sing 123 n n 
C1' H1' ADP sing 124 n n 
N9 C8 ADP sing 125 n y 
N9 C4 ADP sing 126 n y 
C8 N7 ADP doub 127 n y 
C8 H8 ADP sing 128 n n 
N7 C5 ADP sing 129 n y 
C5 C6 ADP sing 130 n y 
C5 C4 ADP doub 131 n y 
C6 N6 ADP sing 132 n n 
C6 N1 ADP doub 133 n y 
N6 HN61 ADP sing 134 n n 
N6 HN62 ADP sing 135 n n 
N1 C2 ADP sing 136 n y 
C2 N3 ADP doub 137 n y 
C2 H2 ADP sing 138 n n 
N3 C4 ADP sing 139 n y 
#
_atom_sites.entry_id                     5OGW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 ADP A 1 401 379 ADP ADP . 
G 3 MG A 1 402 380 MG MG . 
H 4 9UE A 1 403 1 9UE JAS . 
I 2 ADP B 1 401 379 ADP ADP . 
J 3 MG B 1 402 380 MG MG . 
K 2 ADP C 1 401 379 ADP ADP . 
L 3 MG C 1 402 380 MG MG . 
M 4 9UE C 1 403 1 9UE JAS . 
N 2 ADP D 1 401 379 ADP ADP . 
O 3 MG D 1 402 380 MG MG . 
P 2 ADP E 1 401 379 ADP ADP . 
Q 3 MG E 1 402 380 MG MG . 
R 4 9UE E 1 403 1 9UE JAS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 2 160.303 152.652 206.122 1 129.04 ? PB ADP 401 C 1 
HETATM 2 O O1B ADP . . . K 2 160.059 151.805 204.89 1 118.43 ? O1B ADP 401 C 1 
HETATM 3 O O2B ADP . . . K 2 159.756 152.086 207.414 1 130.69 ? O2B ADP 401 C 1 
HETATM 4 O O3B ADP . . . K 2 161.698 153.235 206.277 1 133.06 ? O3B ADP 401 C 1 
HETATM 5 P PA ADP . . . K 2 159.86 154.96 204.706 1 102.4 ? PA ADP 401 C 1 
HETATM 6 O O1A ADP . . . K 2 160.641 154.21 203.663 1 97.71 ? O1A ADP 401 C 1 
HETATM 7 O O2A ADP . . . K 2 160.466 156.144 205.412 1 102.48 ? O2A ADP 401 C 1 
HETATM 8 O O3A ADP . . . K 2 159.38 153.919 205.809 1 113.6 ? O3A ADP 401 C 1 
HETATM 9 O O5' ADP . . . K 2 158.474 155.438 204.07 1 108.9 ? O5' ADP 401 C 1 
HETATM 10 C C5' ADP . . . K 2 158.485 155.892 202.728 1 114.84 ? C5' ADP 401 C 1 
HETATM 11 C C4' ADP . . . K 2 157.047 156.017 202.294 1 114.79 ? C4' ADP 401 C 1 
HETATM 12 O O4' ADP . . . K 2 156.442 157.194 202.82 1 115.84 ? O4' ADP 401 C 1 
HETATM 13 C C3' ADP . . . K 2 156.921 156.034 200.774 1 116.74 ? C3' ADP 401 C 1 
HETATM 14 O O3' ADP . . . K 2 156.694 154.756 200.185 1 115.36 ? O3' ADP 401 C 1 
HETATM 15 C C2' ADP . . . K 2 155.73 156.932 200.583 1 118 ? C2' ADP 401 C 1 
HETATM 16 O O2' ADP . . . K 2 154.535 156.141 200.577 1 108.4 ? O2' ADP 401 C 1 
HETATM 17 C C1' ADP . . . K 2 155.743 157.868 201.78 1 114.25 ? C1' ADP 401 C 1 
HETATM 18 N N9 ADP . . . K 2 156.489 159.103 201.463 1 113.71 ? N9 ADP 401 C 1 
HETATM 19 C C8 ADP . . . K 2 157.82 159.192 201.218 1 114.89 ? C8 ADP 401 C 1 
HETATM 20 N N7 ADP . . . K 2 158.189 160.467 200.973 1 116.24 ? N7 ADP 401 C 1 
HETATM 21 C C5 ADP . . . K 2 157.079 161.213 201.066 1 120.36 ? C5 ADP 401 C 1 
HETATM 22 C C6 ADP . . . K 2 156.778 162.654 200.917 1 125.74 ? C6 ADP 401 C 1 
HETATM 23 N N6 ADP . . . K 2 157.76 163.54 200.619 1 125.61 ? N6 ADP 401 C 1 
HETATM 24 N N1 ADP . . . K 2 155.492 163.035 201.087 1 123.53 ? N1 ADP 401 C 1 
HETATM 25 C C2 ADP . . . K 2 154.516 162.148 201.382 1 118.44 ? C2 ADP 401 C 1 
HETATM 26 N N3 ADP . . . K 2 154.708 160.818 201.533 1 108.53 ? N3 ADP 401 C 1 
HETATM 27 C C4 ADP . . . K 2 155.954 160.31 201.393 1 111.38 ? C4 ADP 401 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#