data_5OH3 # _model_server_result.job_id eICvl82HCl_kbHFQo2MpMA _model_server_result.datetime_utc '2024-12-01 02:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 5OH3 # _exptl.entry_id 5OH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 141.168 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{S})-3-ethyl-3-methyl-pyrrolidine-2,5-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OH3 _cell.length_a 56.88 _cell.length_b 59.79 _cell.length_c 88.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C7 H11 N O2' _chem_comp.formula_weight 141.168 _chem_comp.id 9V2 _chem_comp.mon_nstd_flag . _chem_comp.name (3~{S})-3-ethyl-3-methyl-pyrrolidine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C3 9V2 sing 1 n n C3 C1 9V2 sing 2 n n O1 C4 9V2 doub 3 n n N C4 9V2 sing 4 n n N C6 9V2 sing 5 n n C4 C1 9V2 sing 6 n n C1 C2 9V2 sing 7 n n C1 C5 9V2 sing 8 n n C6 O2 9V2 doub 9 n n C6 C2 9V2 sing 10 n n N H1 9V2 sing 11 n n C3 H2 9V2 sing 12 n n C3 H3 9V2 sing 13 n n C7 H4 9V2 sing 14 n n C7 H5 9V2 sing 15 n n C7 H6 9V2 sing 16 n n C5 H7 9V2 sing 17 n n C5 H8 9V2 sing 18 n n C5 H9 9V2 sing 19 n n C2 H10 9V2 sing 20 n n C2 H11 9V2 sing 21 n n # _atom_sites.entry_id 5OH3 _atom_sites.fract_transf_matrix[1][1] 0.017581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 150 ZN ZN . E 3 9V2 A 1 202 151 9V2 E1T . F 2 ZN B 1 201 150 ZN ZN . G 3 9V2 B 1 202 151 9V2 E1T . H 2 ZN C 1 201 150 ZN ZN . I 4 HOH A 1 301 3 HOH HOH . I 4 HOH A 2 302 33 HOH HOH . I 4 HOH A 3 303 34 HOH HOH . I 4 HOH A 4 304 95 HOH HOH . I 4 HOH A 5 305 13 HOH HOH . I 4 HOH A 6 306 23 HOH HOH . I 4 HOH A 7 307 14 HOH HOH . I 4 HOH A 8 308 48 HOH HOH . I 4 HOH A 9 309 44 HOH HOH . I 4 HOH A 10 310 101 HOH HOH . I 4 HOH A 11 311 11 HOH HOH . I 4 HOH A 12 312 82 HOH HOH . I 4 HOH A 13 313 2 HOH HOH . I 4 HOH A 14 314 54 HOH HOH . I 4 HOH A 15 315 56 HOH HOH . I 4 HOH A 16 316 40 HOH HOH . I 4 HOH A 17 317 31 HOH HOH . I 4 HOH A 18 318 8 HOH HOH . I 4 HOH A 19 319 35 HOH HOH . I 4 HOH A 20 320 50 HOH HOH . I 4 HOH A 21 321 58 HOH HOH . I 4 HOH A 22 322 62 HOH HOH . I 4 HOH A 23 323 61 HOH HOH . I 4 HOH A 24 324 28 HOH HOH . I 4 HOH A 25 325 103 HOH HOH . I 4 HOH A 26 326 90 HOH HOH . I 4 HOH A 27 327 75 HOH HOH . I 4 HOH A 28 328 7 HOH HOH . I 4 HOH A 29 329 10 HOH HOH . I 4 HOH A 30 330 32 HOH HOH . I 4 HOH A 31 331 93 HOH HOH . I 4 HOH A 32 332 17 HOH HOH . I 4 HOH A 33 333 53 HOH HOH . I 4 HOH A 34 334 99 HOH HOH . I 4 HOH A 35 335 29 HOH HOH . I 4 HOH A 36 336 107 HOH HOH . I 4 HOH A 37 337 84 HOH HOH . I 4 HOH A 38 338 113 HOH HOH . I 4 HOH A 39 339 5 HOH HOH . I 4 HOH A 40 340 109 HOH HOH . I 4 HOH A 41 341 69 HOH HOH . I 4 HOH A 42 342 112 HOH HOH . I 4 HOH A 43 343 71 HOH HOH . I 4 HOH A 44 344 87 HOH HOH . I 4 HOH A 45 345 72 HOH HOH . I 4 HOH A 46 346 18 HOH HOH . I 4 HOH A 47 347 89 HOH HOH . I 4 HOH A 48 348 111 HOH HOH . I 4 HOH A 49 349 15 HOH HOH . I 4 HOH A 50 350 55 HOH HOH . I 4 HOH A 51 351 77 HOH HOH . I 4 HOH A 52 352 51 HOH HOH . I 4 HOH A 53 353 74 HOH HOH . I 4 HOH A 54 354 68 HOH HOH . I 4 HOH A 55 355 43 HOH HOH . I 4 HOH A 56 356 97 HOH HOH . J 4 HOH B 1 301 115 HOH HOH . J 4 HOH B 2 302 108 HOH HOH . J 4 HOH B 3 303 30 HOH HOH . J 4 HOH B 4 304 26 HOH HOH . J 4 HOH B 5 305 12 HOH HOH . J 4 HOH B 6 306 52 HOH HOH . J 4 HOH B 7 307 66 HOH HOH . J 4 HOH B 8 308 64 HOH HOH . J 4 HOH B 9 309 73 HOH HOH . J 4 HOH B 10 310 24 HOH HOH . J 4 HOH B 11 311 21 HOH HOH . J 4 HOH B 12 312 88 HOH HOH . J 4 HOH B 13 313 25 HOH HOH . J 4 HOH B 14 314 57 HOH HOH . J 4 HOH B 15 315 16 HOH HOH . J 4 HOH B 16 316 20 HOH HOH . J 4 HOH B 17 317 105 HOH HOH . J 4 HOH B 18 318 76 HOH HOH . J 4 HOH B 19 319 104 HOH HOH . J 4 HOH B 20 320 27 HOH HOH . J 4 HOH B 21 321 47 HOH HOH . J 4 HOH B 22 322 9 HOH HOH . J 4 HOH B 23 323 49 HOH HOH . J 4 HOH B 24 324 19 HOH HOH . J 4 HOH B 25 325 63 HOH HOH . J 4 HOH B 26 326 22 HOH HOH . J 4 HOH B 27 327 46 HOH HOH . J 4 HOH B 28 328 65 HOH HOH . J 4 HOH B 29 329 78 HOH HOH . J 4 HOH B 30 330 59 HOH HOH . J 4 HOH B 31 331 1 HOH HOH . J 4 HOH B 32 332 41 HOH HOH . J 4 HOH B 33 333 81 HOH HOH . J 4 HOH B 34 334 42 HOH HOH . J 4 HOH B 35 335 38 HOH HOH . J 4 HOH B 36 336 79 HOH HOH . J 4 HOH B 37 337 4 HOH HOH . J 4 HOH B 38 338 92 HOH HOH . J 4 HOH B 39 339 6 HOH HOH . J 4 HOH B 40 340 83 HOH HOH . J 4 HOH B 41 341 70 HOH HOH . J 4 HOH B 42 342 39 HOH HOH . J 4 HOH B 43 343 86 HOH HOH . J 4 HOH B 44 344 37 HOH HOH . J 4 HOH B 45 345 96 HOH HOH . J 4 HOH B 46 346 114 HOH HOH . J 4 HOH B 47 347 98 HOH HOH . K 4 HOH C 1 301 45 HOH HOH . K 4 HOH C 2 302 102 HOH HOH . K 4 HOH C 3 303 100 HOH HOH . K 4 HOH C 4 304 110 HOH HOH . K 4 HOH C 5 305 94 HOH HOH . K 4 HOH C 6 306 36 HOH HOH . K 4 HOH C 7 307 67 HOH HOH . K 4 HOH C 8 308 80 HOH HOH . K 4 HOH C 9 309 106 HOH HOH . K 4 HOH C 10 310 91 HOH HOH . K 4 HOH C 11 311 60 HOH HOH . K 4 HOH C 12 312 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 9V2 . . . G 3 22.244 15.572 25.625 1 32.22 ? O1 9V2 202 B 1 HETATM 2 C C4 9V2 . . . G 3 22.711 14.487 25.946 1 32.01 ? C4 9V2 202 B 1 HETATM 3 N N 9V2 . . . G 3 22.444 13.322 25.339 1 30.84 ? N 9V2 202 B 1 HETATM 4 C C1 9V2 . . . G 3 23.706 14.306 27.061 1 33.12 ? C1 9V2 202 B 1 HETATM 5 C C3 9V2 . . . G 3 23.023 14.448 28.423 1 36.45 ? C3 9V2 202 B 1 HETATM 6 C C7 9V2 . . . G 3 22.5 15.823 28.796 1 36.17 ? C7 9V2 202 B 1 HETATM 7 C C5 9V2 . . . G 3 24.843 15.306 26.964 1 34.17 ? C5 9V2 202 B 1 HETATM 8 C C2 9V2 . . . G 3 24.14 12.842 26.808 1 31.38 ? C2 9V2 202 B 1 HETATM 9 C C6 9V2 . . . G 3 23.16 12.367 25.74 1 30.11 ? C6 9V2 202 B 1 HETATM 10 O O2 9V2 . . . G 3 23.043 11.22 25.346 1 27.11 ? O2 9V2 202 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #