data_5OH4
#
_model_server_result.job_id            IKuKKYEf7Dx4ZndGvjuq9Q 
_model_server_result.datetime_utc      '2024-11-05 11:01:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oh4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    5OH4 
#
_exptl.entry_id    5OH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              113.115 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            piperidine-2,6-dione 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OH4 
_cell.length_a            56.18 
_cell.length_b            59.661 
_cell.length_c            88.289 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,G,K 2 1 
C,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
#
_chem_comp.formula           'C5 H7 N O2' 
_chem_comp.formula_weight    113.115 
_chem_comp.id                9UZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              piperidine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 9UZ doub 1 n n 
C02 N03 9UZ sing 2 n n 
C02 C08 9UZ sing 3 n n 
N03 C04 9UZ sing 4 n n 
C08 C07 9UZ sing 5 n n 
O05 C04 9UZ doub 6 n n 
C04 C06 9UZ sing 7 n n 
C07 C06 9UZ sing 8 n n 
N03 H1 9UZ sing 9 n n 
C06 H2 9UZ sing 10 n n 
C06 H3 9UZ sing 11 n n 
C07 H4 9UZ sing 12 n n 
C07 H5 9UZ sing 13 n n 
C08 H6 9UZ sing 14 n n 
C08 H7 9UZ sing 15 n n 
#
_atom_sites.entry_id                     5OH4 
_atom_sites.fract_transf_matrix[1][1]    0.0178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016761 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 9UZ A 1 202 151 9UZ G1U . 
F 2 ZN B 1 201 150 ZN ZN . 
G 3 9UZ B 1 202 151 9UZ G1U . 
H 2 ZN C 1 201 150 ZN ZN . 
I 3 9UZ C 1 202 151 9UZ G1U . 
J 4 HOH A 1 301 15 HOH HOH . 
J 4 HOH A 2 302 8 HOH HOH . 
J 4 HOH A 3 303 7 HOH HOH . 
J 4 HOH A 4 304 19 HOH HOH . 
J 4 HOH A 5 305 24 HOH HOH . 
J 4 HOH A 6 306 17 HOH HOH . 
J 4 HOH A 7 307 16 HOH HOH . 
J 4 HOH A 8 308 39 HOH HOH . 
J 4 HOH A 9 309 33 HOH HOH . 
J 4 HOH A 10 310 3 HOH HOH . 
J 4 HOH A 11 311 23 HOH HOH . 
J 4 HOH A 12 312 6 HOH HOH . 
J 4 HOH A 13 313 26 HOH HOH . 
J 4 HOH A 14 314 11 HOH HOH . 
J 4 HOH A 15 315 13 HOH HOH . 
J 4 HOH A 16 316 20 HOH HOH . 
J 4 HOH A 17 317 27 HOH HOH . 
J 4 HOH A 18 318 22 HOH HOH . 
J 4 HOH A 19 319 31 HOH HOH . 
J 4 HOH A 20 320 10 HOH HOH . 
J 4 HOH A 21 321 9 HOH HOH . 
J 4 HOH A 22 322 29 HOH HOH . 
J 4 HOH A 23 323 25 HOH HOH . 
J 4 HOH A 24 324 69 HOH HOH . 
J 4 HOH A 25 325 14 HOH HOH . 
J 4 HOH A 26 326 28 HOH HOH . 
J 4 HOH A 27 327 18 HOH HOH . 
J 4 HOH A 28 328 60 HOH HOH . 
J 4 HOH A 29 329 12 HOH HOH . 
K 4 HOH B 1 301 45 HOH HOH . 
K 4 HOH B 2 302 48 HOH HOH . 
K 4 HOH B 3 303 42 HOH HOH . 
K 4 HOH B 4 304 40 HOH HOH . 
K 4 HOH B 5 305 63 HOH HOH . 
K 4 HOH B 6 306 52 HOH HOH . 
K 4 HOH B 7 307 49 HOH HOH . 
K 4 HOH B 8 308 56 HOH HOH . 
K 4 HOH B 9 309 51 HOH HOH . 
K 4 HOH B 10 310 32 HOH HOH . 
K 4 HOH B 11 311 36 HOH HOH . 
K 4 HOH B 12 312 30 HOH HOH . 
K 4 HOH B 13 313 50 HOH HOH . 
K 4 HOH B 14 314 43 HOH HOH . 
K 4 HOH B 15 315 44 HOH HOH . 
K 4 HOH B 16 316 55 HOH HOH . 
K 4 HOH B 17 317 34 HOH HOH . 
K 4 HOH B 18 318 46 HOH HOH . 
K 4 HOH B 19 319 41 HOH HOH . 
K 4 HOH B 20 320 53 HOH HOH . 
K 4 HOH B 21 321 38 HOH HOH . 
K 4 HOH B 22 322 54 HOH HOH . 
K 4 HOH B 23 323 57 HOH HOH . 
K 4 HOH B 24 324 47 HOH HOH . 
K 4 HOH B 25 325 4 HOH HOH . 
K 4 HOH B 26 326 35 HOH HOH . 
K 4 HOH B 27 327 37 HOH HOH . 
K 4 HOH B 28 328 5 HOH HOH . 
L 4 HOH C 1 301 62 HOH HOH . 
L 4 HOH C 2 302 58 HOH HOH . 
L 4 HOH C 3 303 68 HOH HOH . 
L 4 HOH C 4 304 1 HOH HOH . 
L 4 HOH C 5 305 65 HOH HOH . 
L 4 HOH C 6 306 67 HOH HOH . 
L 4 HOH C 7 307 2 HOH HOH . 
L 4 HOH C 8 308 66 HOH HOH . 
L 4 HOH C 9 309 64 HOH HOH . 
L 4 HOH C 10 310 61 HOH HOH . 
L 4 HOH C 11 311 21 HOH HOH . 
L 4 HOH C 12 312 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O05 9UZ . . . I 3 23.932 -15.072 -3.649 1 43.61 ? O05 9UZ 202 C 1 
HETATM 2 C C04 9UZ . . . I 3 24.152 -14.931 -2.463 1 44.22 ? C04 9UZ 202 C 1 
HETATM 3 N N03 9UZ . . . I 3 23.232 -15.227 -1.52 1 46.69 ? N03 9UZ 202 C 1 
HETATM 4 C C06 9UZ . . . I 3 25.504 -14.412 -2.027 1 43.32 ? C06 9UZ 202 C 1 
HETATM 5 C C07 9UZ . . . I 3 25.762 -14.684 -0.547 1 44.26 ? C07 9UZ 202 C 1 
HETATM 6 C C08 9UZ . . . I 3 24.566 -14.219 0.281 1 45.39 ? C08 9UZ 202 C 1 
HETATM 7 C C02 9UZ . . . I 3 23.334 -14.935 -0.2 1 46.94 ? C02 9UZ 202 C 1 
HETATM 8 O O01 9UZ . . . I 3 22.468 -15.232 0.613 1 49.45 ? O01 9UZ 202 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#