data_5OHA # _model_server_result.job_id pFp8NsbjhDPvocDFbYhCTQ _model_server_result.datetime_utc '2024-12-18 08:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 5OHA # _exptl.entry_id 5OHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.126 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-sulfanylideneimidazol-4-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OHA _cell.length_a 56.595 _cell.length_b 59.851 _cell.length_c 88.251 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C3 H2 N2 O S' _chem_comp.formula_weight 114.126 _chem_comp.id 9UW _chem_comp.mon_nstd_flag . _chem_comp.name 2-sulfanylideneimidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S8 C8 9UW doub 1 n n N1 C8 9UW sing 2 n n N1 C7 9UW sing 3 n n C8 N2 9UW sing 4 n n C7 O7 9UW doub 5 n n C7 C1 9UW sing 6 n n N2 C1 9UW doub 7 n n C1 H1 9UW sing 8 n n N1 H2 9UW sing 9 n n # _atom_sites.entry_id 5OHA _atom_sites.fract_transf_matrix[1][1] 0.017669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 150 ZN ZN . E 3 9UW A 1 202 151 9UW T1H . F 2 ZN B 1 201 150 ZN ZN . G 3 9UW B 1 202 151 9UW T1H . H 2 ZN C 1 201 150 ZN ZN . I 3 9UW C 1 202 151 9UW T1H . J 4 HOH A 1 301 1 HOH HOH . J 4 HOH A 2 302 9 HOH HOH . J 4 HOH A 3 303 1047 HOH HOH . J 4 HOH A 4 304 5 HOH HOH . J 4 HOH A 5 305 1083 HOH HOH . J 4 HOH A 6 306 1043 HOH HOH . J 4 HOH A 7 307 1037 HOH HOH . J 4 HOH A 8 308 1094 HOH HOH . J 4 HOH A 9 309 1096 HOH HOH . J 4 HOH A 10 310 1040 HOH HOH . J 4 HOH A 11 311 1009 HOH HOH . J 4 HOH A 12 312 1054 HOH HOH . J 4 HOH A 13 313 1070 HOH HOH . J 4 HOH A 14 314 1069 HOH HOH . J 4 HOH A 15 315 1050 HOH HOH . J 4 HOH A 16 316 1077 HOH HOH . J 4 HOH A 17 317 1033 HOH HOH . J 4 HOH A 18 318 1046 HOH HOH . J 4 HOH A 19 319 1065 HOH HOH . J 4 HOH A 20 320 1005 HOH HOH . J 4 HOH A 21 321 1020 HOH HOH . J 4 HOH A 22 322 1024 HOH HOH . J 4 HOH A 23 323 16 HOH HOH . J 4 HOH A 24 324 1006 HOH HOH . J 4 HOH A 25 325 1091 HOH HOH . J 4 HOH A 26 326 1021 HOH HOH . J 4 HOH A 27 327 1074 HOH HOH . J 4 HOH A 28 328 2 HOH HOH . J 4 HOH A 29 329 1081 HOH HOH . J 4 HOH A 30 330 1082 HOH HOH . J 4 HOH A 31 331 1049 HOH HOH . J 4 HOH A 32 332 1062 HOH HOH . J 4 HOH A 33 333 1003 HOH HOH . J 4 HOH A 34 334 1085 HOH HOH . J 4 HOH A 35 335 1053 HOH HOH . J 4 HOH A 36 336 1034 HOH HOH . J 4 HOH A 37 337 1064 HOH HOH . J 4 HOH A 38 338 1052 HOH HOH . J 4 HOH A 39 339 1063 HOH HOH . J 4 HOH A 40 340 1002 HOH HOH . J 4 HOH A 41 341 1097 HOH HOH . J 4 HOH A 42 342 1075 HOH HOH . J 4 HOH A 43 343 1044 HOH HOH . J 4 HOH A 44 344 1060 HOH HOH . J 4 HOH A 45 345 1039 HOH HOH . J 4 HOH A 46 346 1086 HOH HOH . J 4 HOH A 47 347 1056 HOH HOH . J 4 HOH A 48 348 1093 HOH HOH . J 4 HOH A 49 349 1084 HOH HOH . J 4 HOH A 50 350 3 HOH HOH . J 4 HOH A 51 351 1078 HOH HOH . J 4 HOH A 52 352 1076 HOH HOH . J 4 HOH A 53 353 1080 HOH HOH . J 4 HOH A 54 354 1089 HOH HOH . J 4 HOH A 55 355 1042 HOH HOH . J 4 HOH A 56 356 1088 HOH HOH . J 4 HOH A 57 357 26 HOH HOH . J 4 HOH A 58 358 1092 HOH HOH . J 4 HOH A 59 359 1007 HOH HOH . J 4 HOH A 60 360 1087 HOH HOH . J 4 HOH A 61 361 10 HOH HOH . J 4 HOH A 62 362 1022 HOH HOH . J 4 HOH A 63 363 1019 HOH HOH . J 4 HOH A 64 364 1025 HOH HOH . J 4 HOH A 65 365 1030 HOH HOH . J 4 HOH A 66 366 1051 HOH HOH . J 4 HOH A 67 367 1073 HOH HOH . J 4 HOH A 68 368 8 HOH HOH . J 4 HOH A 69 369 1061 HOH HOH . J 4 HOH A 70 370 1004 HOH HOH . J 4 HOH A 71 371 1017 HOH HOH . J 4 HOH A 72 372 6 HOH HOH . J 4 HOH A 73 373 1023 HOH HOH . J 4 HOH A 74 374 1098 HOH HOH . J 4 HOH A 75 375 1090 HOH HOH . J 4 HOH A 76 376 1028 HOH HOH . J 4 HOH A 77 377 1038 HOH HOH . J 4 HOH A 78 378 1026 HOH HOH . J 4 HOH A 79 379 7 HOH HOH . J 4 HOH A 80 380 1035 HOH HOH . J 4 HOH A 81 381 1027 HOH HOH . K 4 HOH B 1 301 20 HOH HOH . K 4 HOH B 2 302 2060 HOH HOH . K 4 HOH B 3 303 27 HOH HOH . K 4 HOH B 4 304 2007 HOH HOH . K 4 HOH B 5 305 2018 HOH HOH . K 4 HOH B 6 306 2056 HOH HOH . K 4 HOH B 7 307 2048 HOH HOH . K 4 HOH B 8 308 2046 HOH HOH . K 4 HOH B 9 309 15 HOH HOH . K 4 HOH B 10 310 2066 HOH HOH . K 4 HOH B 11 311 2053 HOH HOH . K 4 HOH B 12 312 2027 HOH HOH . K 4 HOH B 13 313 2019 HOH HOH . K 4 HOH B 14 314 2052 HOH HOH . K 4 HOH B 15 315 22 HOH HOH . K 4 HOH B 16 316 11 HOH HOH . K 4 HOH B 17 317 2015 HOH HOH . K 4 HOH B 18 318 2021 HOH HOH . K 4 HOH B 19 319 2001 HOH HOH . K 4 HOH B 20 320 2003 HOH HOH . K 4 HOH B 21 321 1008 HOH HOH . K 4 HOH B 22 322 2047 HOH HOH . K 4 HOH B 23 323 2062 HOH HOH . K 4 HOH B 24 324 2020 HOH HOH . K 4 HOH B 25 325 2043 HOH HOH . K 4 HOH B 26 326 2050 HOH HOH . K 4 HOH B 27 327 2030 HOH HOH . K 4 HOH B 28 328 1041 HOH HOH . K 4 HOH B 29 329 2044 HOH HOH . K 4 HOH B 30 330 23 HOH HOH . K 4 HOH B 31 331 2039 HOH HOH . K 4 HOH B 32 332 2035 HOH HOH . K 4 HOH B 33 333 2038 HOH HOH . K 4 HOH B 34 334 2017 HOH HOH . K 4 HOH B 35 335 2064 HOH HOH . K 4 HOH B 36 336 21 HOH HOH . K 4 HOH B 37 337 2033 HOH HOH . K 4 HOH B 38 338 2008 HOH HOH . K 4 HOH B 39 339 2009 HOH HOH . K 4 HOH B 40 340 2061 HOH HOH . K 4 HOH B 41 341 3023 HOH HOH . K 4 HOH B 42 342 2024 HOH HOH . K 4 HOH B 43 343 2055 HOH HOH . K 4 HOH B 44 344 2063 HOH HOH . K 4 HOH B 45 345 2045 HOH HOH . K 4 HOH B 46 346 2070 HOH HOH . K 4 HOH B 47 347 2059 HOH HOH . K 4 HOH B 48 348 13 HOH HOH . K 4 HOH B 49 349 2002 HOH HOH . K 4 HOH B 50 350 2042 HOH HOH . K 4 HOH B 51 351 2054 HOH HOH . K 4 HOH B 52 352 2031 HOH HOH . K 4 HOH B 53 353 2004 HOH HOH . K 4 HOH B 54 354 2049 HOH HOH . K 4 HOH B 55 355 2057 HOH HOH . K 4 HOH B 56 356 2022 HOH HOH . K 4 HOH B 57 357 2065 HOH HOH . K 4 HOH B 58 358 24 HOH HOH . K 4 HOH B 59 359 2034 HOH HOH . K 4 HOH B 60 360 2040 HOH HOH . K 4 HOH B 61 361 2013 HOH HOH . K 4 HOH B 62 362 14 HOH HOH . K 4 HOH B 63 363 2005 HOH HOH . K 4 HOH B 64 364 2028 HOH HOH . K 4 HOH B 65 365 2071 HOH HOH . K 4 HOH B 66 366 2037 HOH HOH . K 4 HOH B 67 367 2012 HOH HOH . K 4 HOH B 68 368 2029 HOH HOH . K 4 HOH B 69 369 2068 HOH HOH . K 4 HOH B 70 370 17 HOH HOH . K 4 HOH B 71 371 19 HOH HOH . K 4 HOH B 72 372 2025 HOH HOH . K 4 HOH B 73 373 1018 HOH HOH . K 4 HOH B 74 374 1015 HOH HOH . K 4 HOH B 75 375 2011 HOH HOH . K 4 HOH B 76 376 2023 HOH HOH . K 4 HOH B 77 377 12 HOH HOH . K 4 HOH B 78 378 18 HOH HOH . K 4 HOH B 79 379 2016 HOH HOH . K 4 HOH B 80 380 2032 HOH HOH . L 4 HOH C 1 301 3021 HOH HOH . L 4 HOH C 2 302 3004 HOH HOH . L 4 HOH C 3 303 3040 HOH HOH . L 4 HOH C 4 304 3038 HOH HOH . L 4 HOH C 5 305 3020 HOH HOH . L 4 HOH C 6 306 25 HOH HOH . L 4 HOH C 7 307 3026 HOH HOH . L 4 HOH C 8 308 3024 HOH HOH . L 4 HOH C 9 309 3025 HOH HOH . L 4 HOH C 10 310 3042 HOH HOH . L 4 HOH C 11 311 3005 HOH HOH . L 4 HOH C 12 312 3027 HOH HOH . L 4 HOH C 13 313 3035 HOH HOH . L 4 HOH C 14 314 3003 HOH HOH . L 4 HOH C 15 315 3011 HOH HOH . L 4 HOH C 16 316 3037 HOH HOH . L 4 HOH C 17 317 3039 HOH HOH . L 4 HOH C 18 318 3028 HOH HOH . L 4 HOH C 19 319 1029 HOH HOH . L 4 HOH C 20 320 3014 HOH HOH . L 4 HOH C 21 321 3002 HOH HOH . L 4 HOH C 22 322 3036 HOH HOH . L 4 HOH C 23 323 3034 HOH HOH . L 4 HOH C 24 324 3019 HOH HOH . L 4 HOH C 25 325 3010 HOH HOH . L 4 HOH C 26 326 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 9UW . . . G 3 22.891 10.88 25.311 1 17.92 ? O7 9UW 202 B 1 HETATM 2 C C7 9UW . . . G 3 23.079 11.931 25.997 1 16.55 ? C7 9UW 202 B 1 HETATM 3 C C1 9UW . . . G 3 24.299 12.119 26.824 1 18.65 ? C1 9UW 202 B 1 HETATM 4 N N2 9UW . . . G 3 24.031 13.465 27.379 1 22.93 ? N2 9UW 202 B 1 HETATM 5 C C8 9UW . . . G 3 22.864 13.81 26.789 1 20.3 ? C8 9UW 202 B 1 HETATM 6 N N1 9UW . . . G 3 22.203 12.954 25.937 1 18.35 ? N1 9UW 202 B 1 HETATM 7 S S8 9UW . . . G 3 22.171 15.378 27.2 1 27.15 ? S8 9UW 202 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 498 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #