data_5OHK # _model_server_result.job_id tTgsGJHpzZ6r5LKy1v774A _model_server_result.datetime_utc '2025-02-17 08:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ohk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5OHK # _exptl.entry_id 5OHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 57.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description prop-2-en-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OHK _cell.length_a 50.917 _cell.length_b 94.408 _cell.length_c 96.115 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 16 A CYS 77 1_555 D C2 AYE . A AYE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale2 D N1 AYE . A AYE 602 1_555 B C GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A SG CYS 139 A CYS 234 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A SG CYS 142 A CYS 237 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A SG CYS 189 A CYS 284 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 A SG CYS 192 A CYS 287 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'C3 H7 N' _chem_comp.formula_weight 57.094 _chem_comp.id AYE _chem_comp.mon_nstd_flag . _chem_comp.name prop-2-en-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ALLYLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 AYE doub 70 n n C2 C1 AYE sing 71 n n C1 N1 AYE sing 72 n n C2 H2 AYE sing 73 n n C3 H3 AYE sing 74 n n C3 H3A AYE sing 75 n n C1 H1 AYE sing 76 n n C1 H1A AYE sing 77 n n N1 HN1 AYE sing 78 n n N1 HN1A AYE sing 79 n n # _atom_sites.entry_id 5OHK _atom_sites.fract_transf_matrix[1][1] 0.01964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 601 800 ZN ZN . D 4 AYE A 1 602 76 AYE AYE . E 5 HOH A 1 701 2 HOH HOH . E 5 HOH A 2 702 26 HOH HOH . E 5 HOH A 3 703 14 HOH HOH . E 5 HOH A 4 704 21 HOH HOH . E 5 HOH A 5 705 1 HOH HOH . E 5 HOH A 6 706 37 HOH HOH . E 5 HOH A 7 707 67 HOH HOH . E 5 HOH A 8 708 4 HOH HOH . E 5 HOH A 9 709 12 HOH HOH . E 5 HOH A 10 710 74 HOH HOH . E 5 HOH A 11 711 40 HOH HOH . E 5 HOH A 12 712 3 HOH HOH . E 5 HOH A 13 713 20 HOH HOH . E 5 HOH A 14 714 69 HOH HOH . E 5 HOH A 15 715 47 HOH HOH . E 5 HOH A 16 716 24 HOH HOH . E 5 HOH A 17 717 57 HOH HOH . E 5 HOH A 18 718 35 HOH HOH . E 5 HOH A 19 719 49 HOH HOH . E 5 HOH A 20 720 6 HOH HOH . E 5 HOH A 21 721 11 HOH HOH . E 5 HOH A 22 722 42 HOH HOH . E 5 HOH A 23 723 9 HOH HOH . E 5 HOH A 24 724 71 HOH HOH . E 5 HOH A 25 725 65 HOH HOH . E 5 HOH A 26 726 10 HOH HOH . E 5 HOH A 27 727 25 HOH HOH . E 5 HOH A 28 728 39 HOH HOH . E 5 HOH A 29 729 33 HOH HOH . E 5 HOH A 30 730 76 HOH HOH . E 5 HOH A 31 731 59 HOH HOH . E 5 HOH A 32 732 15 HOH HOH . E 5 HOH A 33 733 36 HOH HOH . E 5 HOH A 34 734 41 HOH HOH . E 5 HOH A 35 735 62 HOH HOH . E 5 HOH A 36 736 22 HOH HOH . E 5 HOH A 37 737 5 HOH HOH . E 5 HOH A 38 738 7 HOH HOH . E 5 HOH A 39 739 34 HOH HOH . E 5 HOH A 40 740 70 HOH HOH . E 5 HOH A 41 741 68 HOH HOH . E 5 HOH A 42 742 75 HOH HOH . E 5 HOH A 43 743 19 HOH HOH . E 5 HOH A 44 744 46 HOH HOH . E 5 HOH A 45 745 66 HOH HOH . E 5 HOH A 46 746 44 HOH HOH . E 5 HOH A 47 747 43 HOH HOH . E 5 HOH A 48 748 56 HOH HOH . E 5 HOH A 49 749 53 HOH HOH . E 5 HOH A 50 750 13 HOH HOH . E 5 HOH A 51 751 78 HOH HOH . E 5 HOH A 52 752 54 HOH HOH . E 5 HOH A 53 753 45 HOH HOH . E 5 HOH A 54 754 17 HOH HOH . E 5 HOH A 55 755 55 HOH HOH . E 5 HOH A 56 756 72 HOH HOH . E 5 HOH A 57 757 16 HOH HOH . E 5 HOH A 58 758 81 HOH HOH . E 5 HOH A 59 759 73 HOH HOH . E 5 HOH A 60 760 30 HOH HOH . E 5 HOH A 61 761 61 HOH HOH . E 5 HOH A 62 762 50 HOH HOH . E 5 HOH A 63 763 82 HOH HOH . E 5 HOH A 64 764 48 HOH HOH . E 5 HOH A 65 765 18 HOH HOH . E 5 HOH A 66 766 79 HOH HOH . E 5 HOH A 67 767 58 HOH HOH . E 5 HOH A 68 768 63 HOH HOH . E 5 HOH A 69 769 64 HOH HOH . E 5 HOH A 70 770 29 HOH HOH . E 5 HOH A 71 771 52 HOH HOH . E 5 HOH A 72 772 32 HOH HOH . E 5 HOH A 73 773 28 HOH HOH . E 5 HOH A 74 774 51 HOH HOH . E 5 HOH A 75 775 60 HOH HOH . E 5 HOH A 76 776 31 HOH HOH . E 5 HOH A 77 777 80 HOH HOH . F 5 HOH B 1 101 8 HOH HOH . F 5 HOH B 2 102 23 HOH HOH . F 5 HOH B 3 103 38 HOH HOH . F 5 HOH B 4 104 27 HOH HOH . F 5 HOH B 5 105 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AYE . . . D 4 13.681 -1.234 -26.792 1 25.35 ? C2 AYE 602 A 1 HETATM 2 C C3 AYE . . . D 4 13.854 0.288 -26.841 1 24.36 ? C3 AYE 602 A 1 HETATM 3 C C1 AYE . . . D 4 13.785 -1.954 -28.145 1 21.11 ? C1 AYE 602 A 1 HETATM 4 N N1 AYE . . . D 4 12.862 -3.067 -28.184 1 21.69 ? N1 AYE 602 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #