data_5OHL # _model_server_result.job_id Qv2RrZLWL_DyNLJQq5HKqQ _model_server_result.datetime_utc '2024-12-23 08:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ohl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":201}' # _entry.id 5OHL # _exptl.entry_id 5OHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.79 _cell.angle_beta 79.76 _cell.angle_gamma 83.08 _cell.entry_id 5OHL _cell.length_a 60.502 _cell.length_b 69.672 _cell.length_c 99.297 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 PISA tetrameric 4 author_and_software_defined_assembly 5 PISA tetrameric 4 author_and_software_defined_assembly 6 PISA tetrameric 4 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression J,EA 1 1 A,C,K,Q,V,X,FA 1 2 A,C,K,Q,V,X,FA 2 1 J,EA 2 3 L,GA 3 1 B,E,N,R,S,W,Z,IA 3 4 B,E,N,R,S,W,Z,IA 4 1 L,GA 4 5 I,DA 5 1 D,H,M,Y,CA,HA 5 5 D,H,M,Y,CA,HA 6 1 I,DA 6 4 F,G,O,P,T,U,AA,BA,JA,KA 7 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 -17.652206 -15.587794 -96.464058 3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 17.652206 15.587794 96.464058 4 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 8.394317 69.164464 0 5 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 -8.394317 -69.164464 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 359 n n C1 C2 GOL sing 360 n n C1 H11 GOL sing 361 n n C1 H12 GOL sing 362 n n O1 HO1 GOL sing 363 n n C2 O2 GOL sing 364 n n C2 C3 GOL sing 365 n n C2 H2 GOL sing 366 n n O2 HO2 GOL sing 367 n n C3 O3 GOL sing 368 n n C3 H31 GOL sing 369 n n C3 H32 GOL sing 370 n n O3 HO3 GOL sing 371 n n # _atom_sites.entry_id 5OHL _atom_sites.fract_transf_matrix[1][1] 0.016528 _atom_sites.fract_transf_matrix[1][2] -0.002007 _atom_sites.fract_transf_matrix[1][3] -0.0027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014458 _atom_sites.fract_transf_matrix[2][3] -0.002337 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 GOL A 1 201 1 GOL GOL . R 4 15P B 1 201 5 15P 15P . S 4 15P E 1 201 3 15P 15P . T 4 15P F 1 201 4 15P 15P . U 4 15P G 1 201 6 15P 15P . V 5 HOH A 1 301 17 HOH HOH . V 5 HOH A 2 302 35 HOH HOH . V 5 HOH A 3 303 19 HOH HOH . V 5 HOH A 4 304 11 HOH HOH . V 5 HOH A 5 305 58 HOH HOH . V 5 HOH A 6 306 32 HOH HOH . V 5 HOH A 7 307 25 HOH HOH . V 5 HOH A 8 308 37 HOH HOH . V 5 HOH A 9 309 47 HOH HOH . V 5 HOH A 10 310 67 HOH HOH . V 5 HOH A 11 311 69 HOH HOH . W 5 HOH B 1 301 63 HOH HOH . W 5 HOH B 2 302 80 HOH HOH . W 5 HOH B 3 303 91 HOH HOH . W 5 HOH B 4 304 4 HOH HOH . W 5 HOH B 5 305 3 HOH HOH . W 5 HOH B 6 306 10 HOH HOH . W 5 HOH B 7 307 5 HOH HOH . W 5 HOH B 8 308 30 HOH HOH . W 5 HOH B 9 309 41 HOH HOH . W 5 HOH B 10 310 49 HOH HOH . W 5 HOH B 11 311 75 HOH HOH . X 5 HOH C 1 201 39 HOH HOH . X 5 HOH C 2 202 6 HOH HOH . X 5 HOH C 3 203 33 HOH HOH . X 5 HOH C 4 204 105 HOH HOH . X 5 HOH C 5 205 77 HOH HOH . Y 5 HOH D 1 201 42 HOH HOH . Y 5 HOH D 2 202 56 HOH HOH . Y 5 HOH D 3 203 36 HOH HOH . Y 5 HOH D 4 204 15 HOH HOH . Y 5 HOH D 5 205 44 HOH HOH . Y 5 HOH D 6 206 103 HOH HOH . Y 5 HOH D 7 207 60 HOH HOH . Y 5 HOH D 8 208 52 HOH HOH . Y 5 HOH D 9 209 51 HOH HOH . Y 5 HOH D 10 210 82 HOH HOH . Y 5 HOH D 11 211 28 HOH HOH . Y 5 HOH D 12 212 66 HOH HOH . Y 5 HOH D 13 213 83 HOH HOH . Z 5 HOH E 1 301 1 HOH HOH . Z 5 HOH E 2 302 45 HOH HOH . Z 5 HOH E 3 303 2 HOH HOH . Z 5 HOH E 4 304 7 HOH HOH . Z 5 HOH E 5 305 8 HOH HOH . Z 5 HOH E 6 306 29 HOH HOH . Z 5 HOH E 7 307 61 HOH HOH . Z 5 HOH E 8 308 9 HOH HOH . Z 5 HOH E 9 309 90 HOH HOH . Z 5 HOH E 10 310 50 HOH HOH . Z 5 HOH E 11 311 46 HOH HOH . Z 5 HOH E 12 312 70 HOH HOH . Z 5 HOH E 13 313 57 HOH HOH . AA 5 HOH F 1 301 76 HOH HOH . AA 5 HOH F 2 302 95 HOH HOH . AA 5 HOH F 3 303 24 HOH HOH . AA 5 HOH F 4 304 16 HOH HOH . AA 5 HOH F 5 305 89 HOH HOH . AA 5 HOH F 6 306 102 HOH HOH . BA 5 HOH G 1 301 78 HOH HOH . BA 5 HOH G 2 302 54 HOH HOH . BA 5 HOH G 3 303 23 HOH HOH . BA 5 HOH G 4 304 13 HOH HOH . BA 5 HOH G 5 305 65 HOH HOH . BA 5 HOH G 6 306 86 HOH HOH . CA 5 HOH H 1 201 53 HOH HOH . CA 5 HOH H 2 202 22 HOH HOH . CA 5 HOH H 3 203 38 HOH HOH . CA 5 HOH H 4 204 34 HOH HOH . CA 5 HOH H 5 205 14 HOH HOH . CA 5 HOH H 6 206 12 HOH HOH . CA 5 HOH H 7 207 68 HOH HOH . CA 5 HOH H 8 208 98 HOH HOH . CA 5 HOH H 9 209 87 HOH HOH . DA 5 HOH I 1 101 72 HOH HOH . DA 5 HOH I 2 102 59 HOH HOH . DA 5 HOH I 3 103 26 HOH HOH . DA 5 HOH I 4 104 74 HOH HOH . DA 5 HOH I 5 105 62 HOH HOH . DA 5 HOH I 6 106 97 HOH HOH . DA 5 HOH I 7 107 79 HOH HOH . DA 5 HOH I 8 108 88 HOH HOH . EA 5 HOH J 1 101 93 HOH HOH . EA 5 HOH J 2 102 40 HOH HOH . EA 5 HOH J 3 103 85 HOH HOH . EA 5 HOH J 4 104 84 HOH HOH . EA 5 HOH J 5 105 94 HOH HOH . EA 5 HOH J 6 106 73 HOH HOH . FA 5 HOH K 1 101 55 HOH HOH . FA 5 HOH K 2 102 20 HOH HOH . FA 5 HOH K 3 103 71 HOH HOH . FA 5 HOH K 4 104 101 HOH HOH . GA 5 HOH L 1 101 96 HOH HOH . GA 5 HOH L 2 102 21 HOH HOH . GA 5 HOH L 3 103 27 HOH HOH . HA 5 HOH M 1 101 104 HOH HOH . HA 5 HOH M 2 102 43 HOH HOH . HA 5 HOH M 3 103 92 HOH HOH . IA 5 HOH N 1 101 99 HOH HOH . IA 5 HOH N 2 102 100 HOH HOH . IA 5 HOH N 3 103 81 HOH HOH . IA 5 HOH N 4 104 18 HOH HOH . JA 5 HOH O 1 101 48 HOH HOH . JA 5 HOH O 2 102 64 HOH HOH . KA 5 HOH P 1 101 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 3 1.996 11.251 33.135 1 73.85 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . Q 3 2.726 10.987 31.957 1 68.63 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . Q 3 1.759 9.948 33.89 1 71.36 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . Q 3 2.47 9.977 35.107 1 77.3 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . Q 3 0.27 9.772 34.167 1 78.01 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . Q 3 0.044 8.521 34.779 1 71.26 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #