data_5OHX # _model_server_result.job_id RXnrcYlbUoECO5cN9q0ucw _model_server_result.datetime_utc '2025-01-02 22:59:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ohx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 5OHX # _exptl.entry_id 5OHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OHX _cell.length_a 86.143 _cell.length_b 96.099 _cell.length_c 180.684 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 78 A LYS 78 1_555 D C4A PLP . A PLP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? metalc ? metalc1 A SG CYS 12 A CYS 12 1_555 C FE HEM . A HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A NE2 HIS 23 A HIS 23 1_555 C FE HEM . A HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 B SG CYS 12 B CYS 12 1_555 E FE HEM . B HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 B NE2 HIS 23 B HIS 23 1_555 E FE HEM . B HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5OHX _atom_sites.fract_transf_matrix[1][1] 0.011609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 701 701 HEM HEM . D 3 PLP A 1 702 702 PLP PLP . E 2 HEM B 1 701 701 HEM HEM . F 3 PLP B 1 702 702 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -6.5 -43.834 -1.234 1 42.42 ? CHA HEM 701 A 1 HETATM 2 C CHB HEM . . . C 2 -7.483 -41.129 2.667 1 50.76 ? CHB HEM 701 A 1 HETATM 3 C CHC HEM . . . C 2 -4.6 -37.653 0.914 1 39.54 ? CHC HEM 701 A 1 HETATM 4 C CHD HEM . . . C 2 -4.819 -39.835 -3.412 1 42.15 ? CHD HEM 701 A 1 HETATM 5 C C1A HEM . . . C 2 -6.875 -43.483 0.046 1 48.95 ? C1A HEM 701 A 1 HETATM 6 C C2A HEM . . . C 2 -7.292 -44.368 1.123 1 53 ? C2A HEM 701 A 1 HETATM 7 C C3A HEM . . . C 2 -7.563 -43.614 2.193 1 54.75 ? C3A HEM 701 A 1 HETATM 8 C C4A HEM . . . C 2 -7.328 -42.226 1.845 1 51.03 ? C4A HEM 701 A 1 HETATM 9 C CMA HEM . . . C 2 -8.042 -44.135 3.566 1 56.77 ? CMA HEM 701 A 1 HETATM 10 C CAA HEM . . . C 2 -7.419 -45.91 1.079 1 58.08 ? CAA HEM 701 A 1 HETATM 11 C CBA HEM . . . C 2 -8.32 -46.355 -0.069 1 72.75 ? CBA HEM 701 A 1 HETATM 12 C CGA HEM . . . C 2 -8.704 -47.801 0.104 1 90.94 ? CGA HEM 701 A 1 HETATM 13 O O1A HEM . . . C 2 -9.255 -48.393 -0.86 1 94.2 ? O1A HEM 701 A 1 HETATM 14 O O2A HEM . . . C 2 -8.458 -48.361 1.203 1 98.94 ? O2A HEM 701 A 1 HETATM 15 C C1B HEM . . . C 2 -6.764 -39.957 2.567 1 49.25 ? C1B HEM 701 A 1 HETATM 16 C C2B HEM . . . C 2 -6.671 -38.911 3.566 1 48.13 ? C2B HEM 701 A 1 HETATM 17 C C3B HEM . . . C 2 -5.876 -37.939 3.076 1 44.01 ? C3B HEM 701 A 1 HETATM 18 C C4B HEM . . . C 2 -5.433 -38.355 1.76 1 41.54 ? C4B HEM 701 A 1 HETATM 19 C CMB HEM . . . C 2 -7.406 -38.971 4.925 1 45.41 ? CMB HEM 701 A 1 HETATM 20 C CAB HEM . . . C 2 -5.429 -36.6 3.719 1 41.19 ? CAB HEM 701 A 1 HETATM 21 C CBB HEM . . . C 2 -5.626 -36.274 5 1 42.34 ? CBB HEM 701 A 1 HETATM 22 C C1C HEM . . . C 2 -4.437 -37.906 -0.432 1 43.84 ? C1C HEM 701 A 1 HETATM 23 C C2C HEM . . . C 2 -3.773 -37.05 -1.398 1 42.96 ? C2C HEM 701 A 1 HETATM 24 C C3C HEM . . . C 2 -3.835 -37.656 -2.602 1 42.99 ? C3C HEM 701 A 1 HETATM 25 C C4C HEM . . . C 2 -4.541 -38.912 -2.423 1 43.6 ? C4C HEM 701 A 1 HETATM 26 C CMC HEM . . . C 2 -3.13 -35.691 -1.031 1 35.23 ? CMC HEM 701 A 1 HETATM 27 C CAC HEM . . . C 2 -3.292 -37.2 -3.983 1 39.43 ? CAC HEM 701 A 1 HETATM 28 C CBC HEM . . . C 2 -2.62 -36.065 -4.207 1 39.41 ? CBC HEM 701 A 1 HETATM 29 C C1D HEM . . . C 2 -5.318 -41.106 -3.214 1 49.22 ? C1D HEM 701 A 1 HETATM 30 C C2D HEM . . . C 2 -5.613 -42.086 -4.24 1 46.8 ? C2D HEM 701 A 1 HETATM 31 C C3D HEM . . . C 2 -6.083 -43.189 -3.648 1 41.11 ? C3D HEM 701 A 1 HETATM 32 C C4D HEM . . . C 2 -6.094 -42.957 -2.216 1 40.71 ? C4D HEM 701 A 1 HETATM 33 C CMD HEM . . . C 2 -5.425 -41.879 -5.756 1 42.18 ? CMD HEM 701 A 1 HETATM 34 C CAD HEM . . . C 2 -6.515 -44.484 -4.369 1 40.65 ? CAD HEM 701 A 1 HETATM 35 C CBD HEM . . . C 2 -8.007 -44.741 -4.184 1 47.25 ? CBD HEM 701 A 1 HETATM 36 C CGD HEM . . . C 2 -8.279 -46.2 -4.447 1 67.77 ? CGD HEM 701 A 1 HETATM 37 O O1D HEM . . . C 2 -7.304 -46.996 -4.456 1 74.66 ? O1D HEM 701 A 1 HETATM 38 O O2D HEM . . . C 2 -9.465 -46.571 -4.643 1 74.1 ? O2D HEM 701 A 1 HETATM 39 N NA HEM . . . C 2 -6.908 -42.188 0.53 1 47.85 ? NA HEM 701 A 1 HETATM 40 N NB HEM . . . C 2 -5.997 -39.583 1.484 1 47.71 ? NB HEM 701 A 1 HETATM 41 N NC HEM . . . C 2 -4.891 -39.029 -1.093 1 42.92 ? NC HEM 701 A 1 HETATM 42 N ND HEM . . . C 2 -5.624 -41.676 -1.992 1 54.57 ? ND HEM 701 A 1 HETATM 43 FE FE HEM . . . C 2 -5.875 -40.609 -0.261 1 40.49 ? FE HEM 701 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #