data_5OHX # _model_server_result.job_id 5VXR4QnXzes-XxQFpF5u0w _model_server_result.datetime_utc '2025-01-02 23:17:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ohx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5OHX # _exptl.entry_id 5OHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OHX _cell.length_a 86.143 _cell.length_b 96.099 _cell.length_c 180.684 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 78 A LYS 78 1_555 D C4A PLP . A PLP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? metalc ? metalc1 A SG CYS 12 A CYS 12 1_555 C FE HEM . A HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A NE2 HIS 23 A HIS 23 1_555 C FE HEM . A HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 B SG CYS 12 B CYS 12 1_555 E FE HEM . B HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 B NE2 HIS 23 B HIS 23 1_555 E FE HEM . B HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 340 n y N1 C6 PLP sing 341 n y C2 C2A PLP sing 342 n n C2 C3 PLP sing 343 n y C2A H2A1 PLP sing 344 n n C2A H2A2 PLP sing 345 n n C2A H2A3 PLP sing 346 n n C3 O3 PLP sing 347 n n C3 C4 PLP doub 348 n y O3 HO3 PLP sing 349 n n C4 C4A PLP sing 350 n n C4 C5 PLP sing 351 n y C4A O4A PLP doub 352 n n C4A H4A PLP sing 353 n n C5 C6 PLP doub 354 n y C5 C5A PLP sing 355 n n C6 H6 PLP sing 356 n n C5A O4P PLP sing 357 n n C5A H5A1 PLP sing 358 n n C5A H5A2 PLP sing 359 n n O4P P PLP sing 360 n n P O1P PLP doub 361 n n P O2P PLP sing 362 n n P O3P PLP sing 363 n n O2P HOP2 PLP sing 364 n n O3P HOP3 PLP sing 365 n n # _atom_sites.entry_id 5OHX _atom_sites.fract_transf_matrix[1][1] 0.011609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 701 701 HEM HEM . D 3 PLP A 1 702 702 PLP PLP . E 2 HEM B 1 701 701 HEM HEM . F 3 PLP B 1 702 702 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 3 1.881 -35.268 -21.218 1 25.44 ? N1 PLP 702 A 1 HETATM 2 C C2 PLP . . . D 3 2.662 -36.366 -21.287 1 25.3 ? C2 PLP 702 A 1 HETATM 3 C C2A PLP . . . D 3 3.772 -36.437 -22.328 1 24.93 ? C2A PLP 702 A 1 HETATM 4 C C3 PLP . . . D 3 2.452 -37.426 -20.422 1 25.62 ? C3 PLP 702 A 1 HETATM 5 O O3 PLP . . . D 3 3.261 -38.568 -20.501 1 25.62 ? O3 PLP 702 A 1 HETATM 6 C C4 PLP . . . D 3 1.463 -37.36 -19.498 1 29.89 ? C4 PLP 702 A 1 HETATM 7 C C4A PLP . . . D 3 1.246 -38.543 -18.556 1 26.61 ? C4A PLP 702 A 1 HETATM 8 C C5 PLP . . . D 3 0.68 -36.251 -19.426 1 29.1 ? C5 PLP 702 A 1 HETATM 9 C C6 PLP . . . D 3 0.896 -35.197 -20.297 1 25.9 ? C6 PLP 702 A 1 HETATM 10 C C5A PLP . . . D 3 -0.449 -36.144 -18.403 1 26.89 ? C5A PLP 702 A 1 HETATM 11 O O4P PLP . . . D 3 0.051 -36.206 -17.1 1 33.4 ? O4P PLP 702 A 1 HETATM 12 P P PLP . . . D 3 -0.973 -36.712 -15.941 1 35.84 ? P PLP 702 A 1 HETATM 13 O O1P PLP . . . D 3 -1.572 -37.911 -16.671 1 34.72 ? O1P PLP 702 A 1 HETATM 14 O O2P PLP . . . D 3 -2.026 -35.67 -15.645 1 49.37 -1 O2P PLP 702 A 1 HETATM 15 O O3P PLP . . . D 3 -0.23 -37.12 -14.693 1 34 ? O3P PLP 702 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #