data_5OHX # _model_server_result.job_id G4lm7-x4UfSJSXMNY3MIQw _model_server_result.datetime_utc '2025-01-02 22:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ohx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 5OHX # _exptl.entry_id 5OHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OHX _cell.length_a 86.143 _cell.length_b 96.099 _cell.length_c 180.684 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 78 A LYS 78 1_555 D C4A PLP . A PLP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? metalc ? metalc1 A SG CYS 12 A CYS 12 1_555 C FE HEM . A HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A NE2 HIS 23 A HIS 23 1_555 C FE HEM . A HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 B SG CYS 12 B CYS 12 1_555 E FE HEM . B HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 B NE2 HIS 23 B HIS 23 1_555 E FE HEM . B HEM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 340 n y N1 C6 PLP sing 341 n y C2 C2A PLP sing 342 n n C2 C3 PLP sing 343 n y C2A H2A1 PLP sing 344 n n C2A H2A2 PLP sing 345 n n C2A H2A3 PLP sing 346 n n C3 O3 PLP sing 347 n n C3 C4 PLP doub 348 n y O3 HO3 PLP sing 349 n n C4 C4A PLP sing 350 n n C4 C5 PLP sing 351 n y C4A O4A PLP doub 352 n n C4A H4A PLP sing 353 n n C5 C6 PLP doub 354 n y C5 C5A PLP sing 355 n n C6 H6 PLP sing 356 n n C5A O4P PLP sing 357 n n C5A H5A1 PLP sing 358 n n C5A H5A2 PLP sing 359 n n O4P P PLP sing 360 n n P O1P PLP doub 361 n n P O2P PLP sing 362 n n P O3P PLP sing 363 n n O2P HOP2 PLP sing 364 n n O3P HOP3 PLP sing 365 n n # _atom_sites.entry_id 5OHX _atom_sites.fract_transf_matrix[1][1] 0.011609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 701 701 HEM HEM . D 3 PLP A 1 702 702 PLP PLP . E 2 HEM B 1 701 701 HEM HEM . F 3 PLP B 1 702 702 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . F 3 31.299 -34.541 -26.719 1 34.69 ? N1 PLP 702 B 1 HETATM 2 C C2 PLP . . . F 3 30.351 -33.836 -27.381 1 36.27 ? C2 PLP 702 B 1 HETATM 3 C C2A PLP . . . F 3 29.004 -34.481 -27.699 1 32.87 ? C2A PLP 702 B 1 HETATM 4 C C3 PLP . . . F 3 30.602 -32.53 -27.774 1 39.42 ? C3 PLP 702 B 1 HETATM 5 O O3 PLP . . . F 3 29.621 -31.802 -28.462 1 37.36 ? O3 PLP 702 B 1 HETATM 6 C C4 PLP . . . F 3 31.799 -31.957 -27.491 1 39.47 ? C4 PLP 702 B 1 HETATM 7 C C4A PLP . . . F 3 32.073 -30.518 -27.929 1 36.33 ? C4A PLP 702 B 1 HETATM 8 C C5 PLP . . . F 3 32.746 -32.664 -26.821 1 36.06 ? C5 PLP 702 B 1 HETATM 9 C C6 PLP . . . F 3 32.491 -33.97 -26.433 1 35.75 ? C6 PLP 702 B 1 HETATM 10 C C5A PLP . . . F 3 34.1 -32.034 -26.496 1 37.54 ? C5A PLP 702 B 1 HETATM 11 O O4P PLP . . . F 3 33.973 -30.979 -25.584 1 38.69 ? O4P PLP 702 B 1 HETATM 12 P P PLP . . . F 3 35.078 -29.778 -25.648 1 41.84 ? P PLP 702 B 1 HETATM 13 O O1P PLP . . . F 3 35.222 -29.658 -27.163 1 39.04 ? O1P PLP 702 B 1 HETATM 14 O O2P PLP . . . F 3 36.387 -30.172 -25.003 1 42.6 -1 O2P PLP 702 B 1 HETATM 15 O O3P PLP . . . F 3 34.532 -28.514 -25.03 1 48.35 ? O3P PLP 702 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #