data_5OI2 # _model_server_result.job_id td3mqjixoVIC77dk7sLzxA _model_server_result.datetime_utc '2024-10-18 04:21:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oi2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5OI2 # _exptl.entry_id 5OI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[4-(4,4-dimethylcyclohexen-1-yl)-2-methyl-5-pyridin-4-yl-thiophen-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OI2 _cell.length_a 72.194 _cell.length_b 72.194 _cell.length_c 65.935 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -43.956667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 34 A ASP 64 1_555 A N CAS 35 A CAS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CAS 35 A CAS 65 1_555 A N THR 36 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ALA 99 A ALA 129 1_555 A N CAS 100 A CAS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C CAS 100 A CAS 130 1_555 A N TRP 101 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A O PRO 28 A PRO 58 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc2 A OD1 ASP 34 A ASP 64 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc3 A O ILE 54 A ILE 84 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 A OH TYR 69 A TYR 99 1_555 E MG MG . A MG 304 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc5 A O PRO 79 A PRO 109 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc6 A OE1 GLN 147 A GLN 177 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc7 D MG MG . A MG 303 1_555 I O HOH . A HOH 434 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc8 E MG MG . A MG 304 1_555 I O HOH . A HOH 407 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'C24 H31 N O3 S' _chem_comp.formula_weight 413.573 _chem_comp.id 9VN _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[4-(4,4-dimethylcyclohexen-1-yl)-2-methyl-5-pyridin-4-yl-thiophen-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C3 9VN doub 1 n n C29 C28 9VN sing 2 n n C29 C30 9VN sing 3 n n O5 C3 9VN sing 4 n n C28 C27 9VN doub 5 n n C51 C30 9VN sing 6 n n C3 C1 9VN sing 7 n n C30 C24 9VN sing 8 n n C30 C25 9VN sing 9 n n C40 C39 9VN doub 10 n y C40 N52 9VN sing 11 n y C39 C38 9VN sing 12 n y C27 C23 9VN sing 13 n n C27 C26 9VN sing 14 n n C1 C22 9VN sing 15 n n C1 O2 9VN sing 16 n n C23 C22 9VN sing 17 n y C23 C21 9VN doub 18 n y N52 C41 9VN doub 19 n y C25 C26 9VN sing 20 n n C22 C20 9VN doub 21 n y C38 C21 9VN sing 22 n n C38 C42 9VN doub 23 n y C21 S35 9VN sing 24 n y C20 S35 9VN sing 25 n y C20 C36 9VN sing 26 n n O2 C6 9VN sing 27 n n C41 C42 9VN sing 28 n y C9 C6 9VN sing 29 n n C6 C7 9VN sing 30 n n C6 C8 9VN sing 31 n n C7 H1 9VN sing 32 n n C7 H2 9VN sing 33 n n C7 H3 9VN sing 34 n n C8 H4 9VN sing 35 n n C8 H5 9VN sing 36 n n C8 H6 9VN sing 37 n n C9 H7 9VN sing 38 n n C9 H8 9VN sing 39 n n C9 H9 9VN sing 40 n n C1 H10 9VN sing 41 n n O5 H11 9VN sing 42 n n C26 H12 9VN sing 43 n n C26 H13 9VN sing 44 n n C28 H14 9VN sing 45 n n C29 H15 9VN sing 46 n n C29 H16 9VN sing 47 n n C51 H17 9VN sing 48 n n C51 H18 9VN sing 49 n n C51 H19 9VN sing 50 n n C25 H20 9VN sing 51 n n C25 H21 9VN sing 52 n n C24 H22 9VN sing 53 n n C24 H23 9VN sing 54 n n C24 H24 9VN sing 55 n n C36 H25 9VN sing 56 n n C36 H26 9VN sing 57 n n C36 H27 9VN sing 58 n n C42 H28 9VN sing 59 n n C41 H29 9VN sing 60 n n C40 H30 9VN sing 61 n n C39 H31 9VN sing 62 n n # _atom_sites.entry_id 5OI2 _atom_sites.fract_transf_matrix[1][1] 0.013852 _atom_sites.fract_transf_matrix[1][2] 0.007997 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 2 MG A 1 302 4 MG MG . D 2 MG A 1 303 5 MG MG . E 2 MG A 1 304 6 MG MG . F 3 9VN A 1 305 1 9VN 43S . G 4 SO4 A 1 306 1 SO4 SO4 . H 4 SO4 A 1 307 2 SO4 SO4 . I 5 HOH A 1 401 63 HOH HOH . I 5 HOH A 2 402 22 HOH HOH . I 5 HOH A 3 403 20 HOH HOH . I 5 HOH A 4 404 8 HOH HOH . I 5 HOH A 5 405 7 HOH HOH . I 5 HOH A 6 406 28 HOH HOH . I 5 HOH A 7 407 17 HOH HOH . I 5 HOH A 8 408 35 HOH HOH . I 5 HOH A 9 409 25 HOH HOH . I 5 HOH A 10 410 23 HOH HOH . I 5 HOH A 11 411 66 HOH HOH . I 5 HOH A 12 412 9 HOH HOH . I 5 HOH A 13 413 3 HOH HOH . I 5 HOH A 14 414 5 HOH HOH . I 5 HOH A 15 415 4 HOH HOH . I 5 HOH A 16 416 57 HOH HOH . I 5 HOH A 17 417 2 HOH HOH . I 5 HOH A 18 418 49 HOH HOH . I 5 HOH A 19 419 16 HOH HOH . I 5 HOH A 20 420 41 HOH HOH . I 5 HOH A 21 421 33 HOH HOH . I 5 HOH A 22 422 68 HOH HOH . I 5 HOH A 23 423 32 HOH HOH . I 5 HOH A 24 424 21 HOH HOH . I 5 HOH A 25 425 1 HOH HOH . I 5 HOH A 26 426 55 HOH HOH . I 5 HOH A 27 427 73 HOH HOH . I 5 HOH A 28 428 24 HOH HOH . I 5 HOH A 29 429 13 HOH HOH . I 5 HOH A 30 430 37 HOH HOH . I 5 HOH A 31 431 50 HOH HOH . I 5 HOH A 32 432 30 HOH HOH . I 5 HOH A 33 433 18 HOH HOH . I 5 HOH A 34 434 64 HOH HOH . I 5 HOH A 35 435 42 HOH HOH . I 5 HOH A 36 436 6 HOH HOH . I 5 HOH A 37 437 69 HOH HOH . I 5 HOH A 38 438 11 HOH HOH . I 5 HOH A 39 439 29 HOH HOH . I 5 HOH A 40 440 12 HOH HOH . I 5 HOH A 41 441 10 HOH HOH . I 5 HOH A 42 442 39 HOH HOH . I 5 HOH A 43 443 38 HOH HOH . I 5 HOH A 44 444 53 HOH HOH . I 5 HOH A 45 445 14 HOH HOH . I 5 HOH A 46 446 70 HOH HOH . I 5 HOH A 47 447 40 HOH HOH . I 5 HOH A 48 448 27 HOH HOH . I 5 HOH A 49 449 26 HOH HOH . I 5 HOH A 50 450 34 HOH HOH . I 5 HOH A 51 451 65 HOH HOH . I 5 HOH A 52 452 45 HOH HOH . I 5 HOH A 53 453 61 HOH HOH . I 5 HOH A 54 454 48 HOH HOH . I 5 HOH A 55 455 47 HOH HOH . I 5 HOH A 56 456 71 HOH HOH . I 5 HOH A 57 457 19 HOH HOH . I 5 HOH A 58 458 36 HOH HOH . I 5 HOH A 59 459 44 HOH HOH . I 5 HOH A 60 460 46 HOH HOH . I 5 HOH A 61 461 56 HOH HOH . I 5 HOH A 62 462 43 HOH HOH . I 5 HOH A 63 463 59 HOH HOH . I 5 HOH A 64 464 15 HOH HOH . I 5 HOH A 65 465 60 HOH HOH . I 5 HOH A 66 466 31 HOH HOH . I 5 HOH A 67 467 58 HOH HOH . I 5 HOH A 68 468 74 HOH HOH . I 5 HOH A 69 469 62 HOH HOH . I 5 HOH A 70 470 54 HOH HOH . I 5 HOH A 71 471 52 HOH HOH . I 5 HOH A 72 472 51 HOH HOH . I 5 HOH A 73 473 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 9VN . . . F 3 32.741 -34.212 -26.466 1 43.51 ? C6 9VN 305 A 1 HETATM 2 C C7 9VN . . . F 3 32.066 -35.376 -25.751 1 43.13 ? C7 9VN 305 A 1 HETATM 3 C C8 9VN . . . F 3 33.915 -33.81 -25.611 1 40.21 ? C8 9VN 305 A 1 HETATM 4 C C9 9VN . . . F 3 31.845 -32.944 -26.647 1 41.88 ? C9 9VN 305 A 1 HETATM 5 C C3 9VN . . . F 3 33.738 -34.547 -30.01 1 46.68 ? C3 9VN 305 A 1 HETATM 6 C C1 9VN . . . F 3 33.778 -33.883 -28.658 1 42.19 ? C1 9VN 305 A 1 HETATM 7 O O4 9VN . . . F 3 34.576 -34.306 -30.892 1 48.84 ? O4 9VN 305 A 1 HETATM 8 O O5 9VN . . . F 3 32.724 -35.355 -30.275 1 39.07 ? O5 9VN 305 A 1 HETATM 9 O O2 9VN . . . F 3 33.185 -34.78 -27.714 1 42.81 ? O2 9VN 305 A 1 HETATM 10 C C22 9VN . . . F 3 35.193 -33.576 -28.373 1 37.79 ? C22 9VN 305 A 1 HETATM 11 C C23 9VN . . . F 3 35.775 -32.33 -28.565 1 38.69 ? C23 9VN 305 A 1 HETATM 12 C C27 9VN . . . F 3 35.003 -31.161 -28.955 1 37.55 ? C27 9VN 305 A 1 HETATM 13 C C26 9VN . . . F 3 34.702 -30.184 -27.855 1 41.92 ? C26 9VN 305 A 1 HETATM 14 C C28 9VN . . . F 3 34.599 -31.002 -30.206 1 38.94 ? C28 9VN 305 A 1 HETATM 15 C C29 9VN . . . F 3 33.713 -29.856 -30.644 1 44.28 ? C29 9VN 305 A 1 HETATM 16 C C30 9VN . . . F 3 33.149 -29.054 -29.507 1 48.69 ? C30 9VN 305 A 1 HETATM 17 C C51 9VN . . . F 3 32.616 -27.747 -30.042 1 47.6 ? C51 9VN 305 A 1 HETATM 18 C C25 9VN . . . F 3 34.118 -28.879 -28.379 1 48.77 ? C25 9VN 305 A 1 HETATM 19 C C24 9VN . . . F 3 31.983 -29.784 -28.914 1 65.86 ? C24 9VN 305 A 1 HETATM 20 C C21 9VN . . . F 3 37.191 -32.201 -28.279 1 38.74 ? C21 9VN 305 A 1 HETATM 21 S S35 9VN . . . F 3 37.725 -33.741 -27.786 1 45.56 ? S35 9VN 305 A 1 HETATM 22 C C20 9VN . . . F 3 36.213 -34.555 -27.999 1 40.17 ? C20 9VN 305 A 1 HETATM 23 C C36 9VN . . . F 3 36.138 -36.008 -27.686 1 43.77 ? C36 9VN 305 A 1 HETATM 24 C C38 9VN . . . F 3 38.105 -31.054 -28.322 1 45.78 ? C38 9VN 305 A 1 HETATM 25 C C42 9VN . . . F 3 39.208 -30.99 -27.512 1 46.15 ? C42 9VN 305 A 1 HETATM 26 C C41 9VN . . . F 3 40.041 -29.876 -27.645 1 44.96 ? C41 9VN 305 A 1 HETATM 27 N N52 9VN . . . F 3 39.821 -28.853 -28.5 1 48.36 ? N52 9VN 305 A 1 HETATM 28 C C40 9VN . . . F 3 38.769 -28.916 -29.316 1 47.78 ? C40 9VN 305 A 1 HETATM 29 C C39 9VN . . . F 3 37.898 -30.015 -29.241 1 41.56 ? C39 9VN 305 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #