data_5OI5
#
_model_server_result.job_id            5e8o6HsNgwIZ_FiJAVEF9Q 
_model_server_result.datetime_utc      '2024-10-20 00:26:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oi5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5OI5 
#
_exptl.entry_id    5OI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.573 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-[4-(4,4-dimethylcyclohexen-1-yl)-2-methyl-5-pyridin-2-yl-thiophen-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OI5 
_cell.length_a            73.219 
_cell.length_b            73.219 
_cell.length_c            65.998 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 21.999333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 34 A ASP 64 1_555 A N CAS 35 A CAS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 A C CAS 35 A CAS 65 1_555 A N THR 36 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C ALA 99 A ALA 129 1_555 A N CAS 100 A CAS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C CAS 100 A CAS 130 1_555 A N TRP 101 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C24 H31 N O3 S' 
_chem_comp.formula_weight    413.573 
_chem_comp.id                9VK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-[4-(4,4-dimethylcyclohexen-1-yl)-2-methyl-5-pyridin-2-yl-thiophen-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C3 9VK doub 1 n n 
C24 C25 9VK sing 2 n n 
C24 C29 9VK sing 3 n n 
C25 C26 9VK sing 4 n n 
O4 C3 9VK sing 5 n n 
C54 C29 9VK sing 6 n n 
C3 C1 9VK sing 7 n n 
C29 C53 9VK sing 8 n n 
C29 C28 9VK sing 9 n n 
C39 C38 9VK doub 10 n y 
C39 C35 9VK sing 11 n y 
C38 C37 9VK sing 12 n y 
C26 C23 9VK sing 13 n n 
C26 C27 9VK doub 14 n n 
C1 C22 9VK sing 15 n n 
C1 O2 9VK sing 16 n n 
C28 C27 9VK sing 17 n n 
C23 C22 9VK sing 18 n y 
C23 C21 9VK doub 19 n y 
C22 C20 9VK doub 20 n y 
C21 C35 9VK sing 21 n n 
C21 S43 9VK sing 22 n y 
C35 N36 9VK doub 23 n y 
C20 C34 9VK sing 24 n n 
C20 S43 9VK sing 25 n y 
C37 C40 9VK doub 26 n y 
O2 C6 9VK sing 27 n n 
N36 C40 9VK sing 28 n y 
C7 C6 9VK sing 29 n n 
C6 C9 9VK sing 30 n n 
C6 C8 9VK sing 31 n n 
O4 H1 9VK sing 32 n n 
C1 H2 9VK sing 33 n n 
C9 H3 9VK sing 34 n n 
C9 H4 9VK sing 35 n n 
C9 H5 9VK sing 36 n n 
C8 H6 9VK sing 37 n n 
C8 H7 9VK sing 38 n n 
C8 H8 9VK sing 39 n n 
C7 H9 9VK sing 40 n n 
C7 H10 9VK sing 41 n n 
C7 H11 9VK sing 42 n n 
C25 H12 9VK sing 43 n n 
C25 H13 9VK sing 44 n n 
C27 H14 9VK sing 45 n n 
C28 H15 9VK sing 46 n n 
C28 H16 9VK sing 47 n n 
C54 H17 9VK sing 48 n n 
C54 H18 9VK sing 49 n n 
C54 H19 9VK sing 50 n n 
C53 H20 9VK sing 51 n n 
C53 H21 9VK sing 52 n n 
C53 H22 9VK sing 53 n n 
C24 H23 9VK sing 54 n n 
C24 H24 9VK sing 55 n n 
C34 H25 9VK sing 56 n n 
C34 H26 9VK sing 57 n n 
C34 H27 9VK sing 58 n n 
C39 H28 9VK sing 59 n n 
C38 H29 9VK sing 60 n n 
C37 H30 9VK sing 61 n n 
C40 H31 9VK sing 62 n n 
#
_atom_sites.entry_id                     5OI5 
_atom_sites.fract_transf_matrix[1][1]    0.013658 
_atom_sites.fract_transf_matrix[1][2]    0.007885 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9VK A 1 501 501 9VK 64S . 
C 3 MG A 1 502 1 MG MG . 
D 4 HOH A 1 601 19 HOH HOH . 
D 4 HOH A 2 602 12 HOH HOH . 
D 4 HOH A 3 603 7 HOH HOH . 
D 4 HOH A 4 604 43 HOH HOH . 
D 4 HOH A 5 605 13 HOH HOH . 
D 4 HOH A 6 606 27 HOH HOH . 
D 4 HOH A 7 607 23 HOH HOH . 
D 4 HOH A 8 608 10 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 49 HOH HOH . 
D 4 HOH A 11 611 40 HOH HOH . 
D 4 HOH A 12 612 42 HOH HOH . 
D 4 HOH A 13 613 44 HOH HOH . 
D 4 HOH A 14 614 51 HOH HOH . 
D 4 HOH A 15 615 33 HOH HOH . 
D 4 HOH A 16 616 2 HOH HOH . 
D 4 HOH A 17 617 46 HOH HOH . 
D 4 HOH A 18 618 15 HOH HOH . 
D 4 HOH A 19 619 5 HOH HOH . 
D 4 HOH A 20 620 6 HOH HOH . 
D 4 HOH A 21 621 3 HOH HOH . 
D 4 HOH A 22 622 11 HOH HOH . 
D 4 HOH A 23 623 8 HOH HOH . 
D 4 HOH A 24 624 38 HOH HOH . 
D 4 HOH A 25 625 47 HOH HOH . 
D 4 HOH A 26 626 22 HOH HOH . 
D 4 HOH A 27 627 37 HOH HOH . 
D 4 HOH A 28 628 21 HOH HOH . 
D 4 HOH A 29 629 28 HOH HOH . 
D 4 HOH A 30 630 26 HOH HOH . 
D 4 HOH A 31 631 39 HOH HOH . 
D 4 HOH A 32 632 14 HOH HOH . 
D 4 HOH A 33 633 20 HOH HOH . 
D 4 HOH A 34 634 45 HOH HOH . 
D 4 HOH A 35 635 16 HOH HOH . 
D 4 HOH A 36 636 34 HOH HOH . 
D 4 HOH A 37 637 31 HOH HOH . 
D 4 HOH A 38 638 4 HOH HOH . 
D 4 HOH A 39 639 50 HOH HOH . 
D 4 HOH A 40 640 24 HOH HOH . 
D 4 HOH A 41 641 36 HOH HOH . 
D 4 HOH A 42 642 17 HOH HOH . 
D 4 HOH A 43 643 41 HOH HOH . 
D 4 HOH A 44 644 48 HOH HOH . 
D 4 HOH A 45 645 35 HOH HOH . 
D 4 HOH A 46 646 25 HOH HOH . 
D 4 HOH A 47 647 18 HOH HOH . 
D 4 HOH A 48 648 29 HOH HOH . 
D 4 HOH A 49 649 30 HOH HOH . 
D 4 HOH A 50 650 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 9VK . . . B 2 -3.621 27.586 2.652 1 47.81 ? O4 9VK 501 A 1 
HETATM 2 C C3 9VK . . . B 2 -2.707 28.358 2.882 1 46.44 ? C3 9VK 501 A 1 
HETATM 3 O O5 9VK . . . B 2 -1.804 28.557 1.953 1 51.95 ? O5 9VK 501 A 1 
HETATM 4 C C1 9VK . . . B 2 -2.619 29.096 4.191 1 47.63 ? C1 9VK 501 A 1 
HETATM 5 O O2 9VK . . . B 2 -3.153 28.23 5.198 1 44.93 ? O2 9VK 501 A 1 
HETATM 6 C C6 9VK . . . B 2 -3.452 28.794 6.472 1 48.44 ? C6 9VK 501 A 1 
HETATM 7 C C9 9VK . . . B 2 -2.171 29.157 7.213 1 47.35 ? C9 9VK 501 A 1 
HETATM 8 C C8 9VK . . . B 2 -4.165 27.664 7.233 1 46.43 ? C8 9VK 501 A 1 
HETATM 9 C C7 9VK . . . B 2 -4.319 30.041 6.349 1 43.94 ? C7 9VK 501 A 1 
HETATM 10 C C22 9VK . . . B 2 -1.242 29.421 4.491 1 41.22 ? C22 9VK 501 A 1 
HETATM 11 C C23 9VK . . . B 2 -0.654 30.775 4.391 1 41.31 ? C23 9VK 501 A 1 
HETATM 12 C C26 9VK . . . B 2 -1.335 32.024 4.001 1 50.29 ? C26 9VK 501 A 1 
HETATM 13 C C25 9VK . . . B 2 -1.702 32.214 2.546 1 49.23 ? C25 9VK 501 A 1 
HETATM 14 C C27 9VK . . . B 2 -1.567 33 4.898 1 53.68 ? C27 9VK 501 A 1 
HETATM 15 C C28 9VK . . . B 2 -2.026 34.355 4.374 1 56.6 ? C28 9VK 501 A 1 
HETATM 16 C C29 9VK . . . B 2 -3.137 34.191 3.371 1 51.64 ? C29 9VK 501 A 1 
HETATM 17 C C54 9VK . . . B 2 -3.479 35.54 2.75 1 54.25 ? C54 9VK 501 A 1 
HETATM 18 C C53 9VK . . . B 2 -4.326 33.719 4.188 1 69.36 ? C53 9VK 501 A 1 
HETATM 19 C C24 9VK . . . B 2 -2.86 33.181 2.278 1 44.32 ? C24 9VK 501 A 1 
HETATM 20 C C21 9VK . . . B 2 0.755 30.774 4.756 1 44.89 ? C21 9VK 501 A 1 
HETATM 21 S S43 9VK . . . B 2 1.299 29.172 5.221 1 45.64 ? S43 9VK 501 A 1 
HETATM 22 C C20 9VK . . . B 2 -0.224 28.41 4.94 1 41.86 ? C20 9VK 501 A 1 
HETATM 23 C C34 9VK . . . B 2 -0.255 26.926 5.2 1 39.41 ? C34 9VK 501 A 1 
HETATM 24 C C35 9VK . . . B 2 1.765 31.828 4.808 1 45.77 ? C35 9VK 501 A 1 
HETATM 25 C C39 9VK . . . B 2 1.78 32.9 3.897 1 45.05 ? C39 9VK 501 A 1 
HETATM 26 C C38 9VK . . . B 2 2.791 33.858 3.956 1 44.99 ? C38 9VK 501 A 1 
HETATM 27 C C37 9VK . . . B 2 3.752 33.693 4.95 1 44.2 ? C37 9VK 501 A 1 
HETATM 28 C C40 9VK . . . B 2 3.68 32.583 5.813 1 49.67 ? C40 9VK 501 A 1 
HETATM 29 N N36 9VK . . . B 2 2.721 31.655 5.724 1 45.63 ? N36 9VK 501 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#