data_5OIL
#
_model_server_result.job_id            IHflaOXxnYM5EMbm0ed9rw 
_model_server_result.datetime_utc      '2024-11-21 17:50:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oil 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5OIL 
#
_exptl.entry_id    5OIL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              233.309 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclohexyl-3-(pyridin-3-ylmethyl)urea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OIL 
_cell.length_a            97.5 
_cell.length_b            97.5 
_cell.length_c            140.32 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OIL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 48.75 84.437477 0 
3 'crystal symmetry operation' 7_553 y,x,-z-4/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -187.093333 
4 'crystal symmetry operation' 10_663 -y+1,-x+1,-z-4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 48.75 84.437477 -187.093333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H19 N3 O' 
_chem_comp.formula_weight    233.309 
_chem_comp.id                9VW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclohexyl-3-(pyridin-3-ylmethyl)urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 9VW doub 1 n n 
C25 C28 9VW sing 2 n n 
C25 C22 9VW sing 3 n n 
C31 C28 9VW sing 4 n n 
C31 C34 9VW sing 5 n n 
C20 C22 9VW sing 6 n n 
C20 C34 9VW sing 7 n n 
C20 N18 9VW sing 8 n n 
C02 N18 9VW sing 9 n n 
C02 N03 9VW sing 10 n n 
C05 N03 9VW sing 11 n n 
C05 C08 9VW sing 12 n n 
C08 C09 9VW doub 13 n y 
C08 C16 9VW sing 14 n y 
C09 C11 9VW sing 15 n y 
C16 N15 9VW doub 16 n y 
C11 C13 9VW doub 17 n y 
C13 N15 9VW sing 18 n y 
C13 H1 9VW sing 19 n n 
C20 H2 9VW sing 20 n n 
C22 H3 9VW sing 21 n n 
C22 H4 9VW sing 22 n n 
C28 H5 9VW sing 23 n n 
C28 H6 9VW sing 24 n n 
N03 H7 9VW sing 25 n n 
C05 H8 9VW sing 26 n n 
C05 H9 9VW sing 27 n n 
C09 H10 9VW sing 28 n n 
C11 H11 9VW sing 29 n n 
C16 H12 9VW sing 30 n n 
N18 H13 9VW sing 31 n n 
C25 H14 9VW sing 32 n n 
C25 H15 9VW sing 33 n n 
C31 H16 9VW sing 34 n n 
C31 H17 9VW sing 35 n n 
C34 H18 9VW sing 36 n n 
C34 H19 9VW sing 37 n n 
#
_atom_sites.entry_id                     5OIL 
_atom_sites.fract_transf_matrix[1][1]    0.010256 
_atom_sites.fract_transf_matrix[1][2]    0.005922 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 4000 NAD NXX . 
C 3 9VW A 1 302 1 9VW LIG . 
D 4 ETX A 1 303 1 ETX ETX . 
E 5 HOH A 1 401 321 HOH HOH . 
E 5 HOH A 2 402 227 HOH HOH . 
E 5 HOH A 3 403 179 HOH HOH . 
E 5 HOH A 4 404 85 HOH HOH . 
E 5 HOH A 5 405 267 HOH HOH . 
E 5 HOH A 6 406 65 HOH HOH . 
E 5 HOH A 7 407 256 HOH HOH . 
E 5 HOH A 8 408 309 HOH HOH . 
E 5 HOH A 9 409 252 HOH HOH . 
E 5 HOH A 10 410 163 HOH HOH . 
E 5 HOH A 11 411 40 HOH HOH . 
E 5 HOH A 12 412 3 HOH HOH . 
E 5 HOH A 13 413 18 HOH HOH . 
E 5 HOH A 14 414 253 HOH HOH . 
E 5 HOH A 15 415 16 HOH HOH . 
E 5 HOH A 16 416 6 HOH HOH . 
E 5 HOH A 17 417 10 HOH HOH . 
E 5 HOH A 18 418 310 HOH HOH . 
E 5 HOH A 19 419 150 HOH HOH . 
E 5 HOH A 20 420 4 HOH HOH . 
E 5 HOH A 21 421 8 HOH HOH . 
E 5 HOH A 22 422 14 HOH HOH . 
E 5 HOH A 23 423 340 HOH HOH . 
E 5 HOH A 24 424 13 HOH HOH . 
E 5 HOH A 25 425 29 HOH HOH . 
E 5 HOH A 26 426 60 HOH HOH . 
E 5 HOH A 27 427 5 HOH HOH . 
E 5 HOH A 28 428 259 HOH HOH . 
E 5 HOH A 29 429 153 HOH HOH . 
E 5 HOH A 30 430 37 HOH HOH . 
E 5 HOH A 31 431 77 HOH HOH . 
E 5 HOH A 32 432 52 HOH HOH . 
E 5 HOH A 33 433 373 HOH HOH . 
E 5 HOH A 34 434 314 HOH HOH . 
E 5 HOH A 35 435 2 HOH HOH . 
E 5 HOH A 36 436 155 HOH HOH . 
E 5 HOH A 37 437 30 HOH HOH . 
E 5 HOH A 38 438 161 HOH HOH . 
E 5 HOH A 39 439 11 HOH HOH . 
E 5 HOH A 40 440 159 HOH HOH . 
E 5 HOH A 41 441 1 HOH HOH . 
E 5 HOH A 42 442 160 HOH HOH . 
E 5 HOH A 43 443 39 HOH HOH . 
E 5 HOH A 44 444 50 HOH HOH . 
E 5 HOH A 45 445 142 HOH HOH . 
E 5 HOH A 46 446 26 HOH HOH . 
E 5 HOH A 47 447 44 HOH HOH . 
E 5 HOH A 48 448 188 HOH HOH . 
E 5 HOH A 49 449 28 HOH HOH . 
E 5 HOH A 50 450 69 HOH HOH . 
E 5 HOH A 51 451 15 HOH HOH . 
E 5 HOH A 52 452 32 HOH HOH . 
E 5 HOH A 53 453 9 HOH HOH . 
E 5 HOH A 54 454 374 HOH HOH . 
E 5 HOH A 55 455 254 HOH HOH . 
E 5 HOH A 56 456 109 HOH HOH . 
E 5 HOH A 57 457 24 HOH HOH . 
E 5 HOH A 58 458 143 HOH HOH . 
E 5 HOH A 59 459 126 HOH HOH . 
E 5 HOH A 60 460 56 HOH HOH . 
E 5 HOH A 61 461 36 HOH HOH . 
E 5 HOH A 62 462 7 HOH HOH . 
E 5 HOH A 63 463 226 HOH HOH . 
E 5 HOH A 64 464 38 HOH HOH . 
E 5 HOH A 65 465 23 HOH HOH . 
E 5 HOH A 66 466 19 HOH HOH . 
E 5 HOH A 67 467 89 HOH HOH . 
E 5 HOH A 68 468 20 HOH HOH . 
E 5 HOH A 69 469 108 HOH HOH . 
E 5 HOH A 70 470 266 HOH HOH . 
E 5 HOH A 71 471 264 HOH HOH . 
E 5 HOH A 72 472 62 HOH HOH . 
E 5 HOH A 73 473 17 HOH HOH . 
E 5 HOH A 74 474 138 HOH HOH . 
E 5 HOH A 75 475 64 HOH HOH . 
E 5 HOH A 76 476 103 HOH HOH . 
E 5 HOH A 77 477 175 HOH HOH . 
E 5 HOH A 78 478 43 HOH HOH . 
E 5 HOH A 79 479 250 HOH HOH . 
E 5 HOH A 80 480 86 HOH HOH . 
E 5 HOH A 81 481 113 HOH HOH . 
E 5 HOH A 82 482 63 HOH HOH . 
E 5 HOH A 83 483 377 HOH HOH . 
E 5 HOH A 84 484 260 HOH HOH . 
E 5 HOH A 85 485 87 HOH HOH . 
E 5 HOH A 86 486 356 HOH HOH . 
E 5 HOH A 87 487 55 HOH HOH . 
E 5 HOH A 88 488 316 HOH HOH . 
E 5 HOH A 89 489 51 HOH HOH . 
E 5 HOH A 90 490 257 HOH HOH . 
E 5 HOH A 91 491 83 HOH HOH . 
E 5 HOH A 92 492 98 HOH HOH . 
E 5 HOH A 93 493 133 HOH HOH . 
E 5 HOH A 94 494 91 HOH HOH . 
E 5 HOH A 95 495 47 HOH HOH . 
E 5 HOH A 96 496 121 HOH HOH . 
E 5 HOH A 97 497 261 HOH HOH . 
E 5 HOH A 98 498 368 HOH HOH . 
E 5 HOH A 99 499 201 HOH HOH . 
E 5 HOH A 100 500 81 HOH HOH . 
E 5 HOH A 101 501 183 HOH HOH . 
E 5 HOH A 102 502 275 HOH HOH . 
E 5 HOH A 103 503 122 HOH HOH . 
E 5 HOH A 104 504 71 HOH HOH . 
E 5 HOH A 105 505 221 HOH HOH . 
E 5 HOH A 106 506 369 HOH HOH . 
E 5 HOH A 107 507 110 HOH HOH . 
E 5 HOH A 108 508 111 HOH HOH . 
E 5 HOH A 109 509 147 HOH HOH . 
E 5 HOH A 110 510 99 HOH HOH . 
E 5 HOH A 111 511 294 HOH HOH . 
E 5 HOH A 112 512 349 HOH HOH . 
E 5 HOH A 113 513 218 HOH HOH . 
E 5 HOH A 114 514 348 HOH HOH . 
E 5 HOH A 115 515 118 HOH HOH . 
E 5 HOH A 116 516 59 HOH HOH . 
E 5 HOH A 117 517 136 HOH HOH . 
E 5 HOH A 118 518 271 HOH HOH . 
E 5 HOH A 119 519 128 HOH HOH . 
E 5 HOH A 120 520 233 HOH HOH . 
E 5 HOH A 121 521 72 HOH HOH . 
E 5 HOH A 122 522 172 HOH HOH . 
E 5 HOH A 123 523 195 HOH HOH . 
E 5 HOH A 124 524 177 HOH HOH . 
E 5 HOH A 125 525 207 HOH HOH . 
E 5 HOH A 126 526 106 HOH HOH . 
E 5 HOH A 127 527 107 HOH HOH . 
E 5 HOH A 128 528 222 HOH HOH . 
E 5 HOH A 129 529 367 HOH HOH . 
E 5 HOH A 130 530 93 HOH HOH . 
E 5 HOH A 131 531 327 HOH HOH . 
E 5 HOH A 132 532 42 HOH HOH . 
E 5 HOH A 133 533 94 HOH HOH . 
E 5 HOH A 134 534 97 HOH HOH . 
E 5 HOH A 135 535 140 HOH HOH . 
E 5 HOH A 136 536 54 HOH HOH . 
E 5 HOH A 137 537 197 HOH HOH . 
E 5 HOH A 138 538 198 HOH HOH . 
E 5 HOH A 139 539 342 HOH HOH . 
E 5 HOH A 140 540 123 HOH HOH . 
E 5 HOH A 141 541 92 HOH HOH . 
E 5 HOH A 142 542 79 HOH HOH . 
E 5 HOH A 143 543 139 HOH HOH . 
E 5 HOH A 144 544 182 HOH HOH . 
E 5 HOH A 145 545 341 HOH HOH . 
E 5 HOH A 146 546 75 HOH HOH . 
E 5 HOH A 147 547 73 HOH HOH . 
E 5 HOH A 148 548 173 HOH HOH . 
E 5 HOH A 149 549 190 HOH HOH . 
E 5 HOH A 150 550 237 HOH HOH . 
E 5 HOH A 151 551 114 HOH HOH . 
E 5 HOH A 152 552 180 HOH HOH . 
E 5 HOH A 153 553 214 HOH HOH . 
E 5 HOH A 154 554 223 HOH HOH . 
E 5 HOH A 155 555 290 HOH HOH . 
E 5 HOH A 156 556 148 HOH HOH . 
E 5 HOH A 157 557 12 HOH HOH . 
E 5 HOH A 158 558 67 HOH HOH . 
E 5 HOH A 159 559 105 HOH HOH . 
E 5 HOH A 160 560 88 HOH HOH . 
E 5 HOH A 161 561 90 HOH HOH . 
E 5 HOH A 162 562 162 HOH HOH . 
E 5 HOH A 163 563 58 HOH HOH . 
E 5 HOH A 164 564 273 HOH HOH . 
E 5 HOH A 165 565 347 HOH HOH . 
E 5 HOH A 166 566 174 HOH HOH . 
E 5 HOH A 167 567 217 HOH HOH . 
E 5 HOH A 168 568 228 HOH HOH . 
E 5 HOH A 169 569 82 HOH HOH . 
E 5 HOH A 170 570 61 HOH HOH . 
E 5 HOH A 171 571 25 HOH HOH . 
E 5 HOH A 172 572 119 HOH HOH . 
E 5 HOH A 173 573 74 HOH HOH . 
E 5 HOH A 174 574 176 HOH HOH . 
E 5 HOH A 175 575 116 HOH HOH . 
E 5 HOH A 176 576 194 HOH HOH . 
E 5 HOH A 177 577 366 HOH HOH . 
E 5 HOH A 178 578 365 HOH HOH . 
E 5 HOH A 179 579 84 HOH HOH . 
E 5 HOH A 180 580 375 HOH HOH . 
E 5 HOH A 181 581 209 HOH HOH . 
E 5 HOH A 182 582 134 HOH HOH . 
E 5 HOH A 183 583 132 HOH HOH . 
E 5 HOH A 184 584 249 HOH HOH . 
E 5 HOH A 185 585 215 HOH HOH . 
E 5 HOH A 186 586 130 HOH HOH . 
E 5 HOH A 187 587 244 HOH HOH . 
E 5 HOH A 188 588 372 HOH HOH . 
E 5 HOH A 189 589 185 HOH HOH . 
E 5 HOH A 190 590 80 HOH HOH . 
E 5 HOH A 191 591 78 HOH HOH . 
E 5 HOH A 192 592 319 HOH HOH . 
E 5 HOH A 193 593 204 HOH HOH . 
E 5 HOH A 194 594 164 HOH HOH . 
E 5 HOH A 195 595 124 HOH HOH . 
E 5 HOH A 196 596 335 HOH HOH . 
E 5 HOH A 197 597 115 HOH HOH . 
E 5 HOH A 198 598 171 HOH HOH . 
E 5 HOH A 199 599 211 HOH HOH . 
E 5 HOH A 200 600 202 HOH HOH . 
E 5 HOH A 201 601 178 HOH HOH . 
E 5 HOH A 202 602 117 HOH HOH . 
E 5 HOH A 203 603 246 HOH HOH . 
E 5 HOH A 204 604 376 HOH HOH . 
E 5 HOH A 205 605 370 HOH HOH . 
E 5 HOH A 206 606 352 HOH HOH . 
E 5 HOH A 207 607 339 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 9VW . . . C 3 35.953 48.758 -77.377 1 33.62 ? C13 9VW 302 A 1 
HETATM 2 C C20 9VW . . . C 3 42.126 52.307 -81.706 1 29.13 ? C20 9VW 302 A 1 
HETATM 3 C C22 9VW . . . C 3 41.668 53.738 -81.435 1 27.69 ? C22 9VW 302 A 1 
HETATM 4 C C28 9VW . . . C 3 43.999 54.578 -81.852 1 28.85 ? C28 9VW 302 A 1 
HETATM 5 O O01 9VW . . . C 3 39.922 50.711 -82.58 1 34.96 ? O01 9VW 302 A 1 
HETATM 6 C C02 9VW . . . C 3 40.268 50.687 -81.392 1 31.72 ? C02 9VW 302 A 1 
HETATM 7 N N03 9VW . . . C 3 39.654 49.934 -80.452 1 29.41 ? N03 9VW 302 A 1 
HETATM 8 C C05 9VW . . . C 3 38.528 49.06 -80.736 1 29.39 ? C05 9VW 302 A 1 
HETATM 9 C C08 9VW . . . C 3 37.585 48.958 -79.565 1 33.07 ? C08 9VW 302 A 1 
HETATM 10 C C09 9VW . . . C 3 36.39 49.663 -79.527 1 31.61 ? C09 9VW 302 A 1 
HETATM 11 C C11 9VW . . . C 3 35.556 49.561 -78.427 1 32.04 ? C11 9VW 302 A 1 
HETATM 12 N N15 9VW . . . C 3 37.114 48.076 -77.368 1 35.26 ? N15 9VW 302 A 1 
HETATM 13 C C16 9VW . . . C 3 37.904 48.198 -78.448 1 35.54 ? C16 9VW 302 A 1 
HETATM 14 N N18 9VW . . . C 3 41.328 51.376 -80.912 1 29.95 ? N18 9VW 302 A 1 
HETATM 15 C C25 9VW . . . C 3 42.527 54.748 -82.187 1 27.9 ? C25 9VW 302 A 1 
HETATM 16 C C31 9VW . . . C 3 44.46 53.16 -82.13 1 29.89 ? C31 9VW 302 A 1 
HETATM 17 C C34 9VW . . . C 3 43.601 52.138 -81.381 1 30.17 ? C34 9VW 302 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           17 
#