data_5OIN # _model_server_result.job_id D2QkL9vwyXXN3OXlUN1w4g _model_server_result.datetime_utc '2024-11-07 18:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5OIN # _exptl.entry_id 5OIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OIN _cell.length_a 92.07 _cell.length_b 101.08 _cell.length_c 186.96 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 270 n n PA O2A NAD sing 271 n n PA O5B NAD sing 272 n n PA O3 NAD sing 273 n n O2A HOA2 NAD sing 274 n n O5B C5B NAD sing 275 n n C5B C4B NAD sing 276 n n C5B H51A NAD sing 277 n n C5B H52A NAD sing 278 n n C4B O4B NAD sing 279 n n C4B C3B NAD sing 280 n n C4B H4B NAD sing 281 n n O4B C1B NAD sing 282 n n C3B O3B NAD sing 283 n n C3B C2B NAD sing 284 n n C3B H3B NAD sing 285 n n O3B HO3A NAD sing 286 n n C2B O2B NAD sing 287 n n C2B C1B NAD sing 288 n n C2B H2B NAD sing 289 n n O2B HO2A NAD sing 290 n n C1B N9A NAD sing 291 n n C1B H1B NAD sing 292 n n N9A C8A NAD sing 293 n y N9A C4A NAD sing 294 n y C8A N7A NAD doub 295 n y C8A H8A NAD sing 296 n n N7A C5A NAD sing 297 n y C5A C6A NAD sing 298 n y C5A C4A NAD doub 299 n y C6A N6A NAD sing 300 n n C6A N1A NAD doub 301 n y N6A H61A NAD sing 302 n n N6A H62A NAD sing 303 n n N1A C2A NAD sing 304 n y C2A N3A NAD doub 305 n y C2A H2A NAD sing 306 n n N3A C4A NAD sing 307 n y O3 PN NAD sing 308 n n PN O1N NAD doub 309 n n PN O2N NAD sing 310 n n PN O5D NAD sing 311 n n O5D C5D NAD sing 312 n n C5D C4D NAD sing 313 n n C5D H51N NAD sing 314 n n C5D H52N NAD sing 315 n n C4D O4D NAD sing 316 n n C4D C3D NAD sing 317 n n C4D H4D NAD sing 318 n n O4D C1D NAD sing 319 n n C3D O3D NAD sing 320 n n C3D C2D NAD sing 321 n n C3D H3D NAD sing 322 n n O3D HO3N NAD sing 323 n n C2D O2D NAD sing 324 n n C2D C1D NAD sing 325 n n C2D H2D NAD sing 326 n n O2D HO2N NAD sing 327 n n C1D N1N NAD sing 328 n n C1D H1D NAD sing 329 n n N1N C2N NAD sing 330 n y N1N C6N NAD doub 331 n y C2N C3N NAD doub 332 n y C2N H2N NAD sing 333 n n C3N C7N NAD sing 334 n n C3N C4N NAD sing 335 n y C7N O7N NAD doub 336 n n C7N N7N NAD sing 337 n n N7N H71N NAD sing 338 n n N7N H72N NAD sing 339 n n C4N C5N NAD doub 340 n y C4N H4N NAD sing 341 n n C5N C6N NAD sing 342 n y C5N H5N NAD sing 343 n n C6N H6N NAD sing 344 n n # _atom_sites.entry_id 5OIN _atom_sites.fract_transf_matrix[1][1] 0.010861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 301 1 NAD NXX . F 3 9W2 B 1 301 3 9W2 LIG . G 2 NAD B 1 302 2 NAD NXX . H 3 9W2 C 1 301 1 9W2 LIG . I 2 NAD C 1 302 3 NAD NXX . J 3 9W2 D 1 301 2 9W2 LIG . K 2 NAD D 1 302 4 NAD NXX . L 4 HOH A 1 401 18 HOH HOH . L 4 HOH A 2 402 54 HOH HOH . L 4 HOH A 3 403 9 HOH HOH . L 4 HOH A 4 404 111 HOH HOH . L 4 HOH A 5 405 17 HOH HOH . L 4 HOH A 6 406 12 HOH HOH . L 4 HOH A 7 407 77 HOH HOH . L 4 HOH A 8 408 15 HOH HOH . L 4 HOH A 9 409 13 HOH HOH . L 4 HOH A 10 410 2 HOH HOH . L 4 HOH A 11 411 116 HOH HOH . L 4 HOH A 12 412 103 HOH HOH . L 4 HOH A 13 413 92 HOH HOH . M 4 HOH B 1 401 685 HOH HOH . M 4 HOH B 2 402 24 HOH HOH . M 4 HOH B 3 403 25 HOH HOH . M 4 HOH B 4 404 23 HOH HOH . M 4 HOH B 5 405 33 HOH HOH . M 4 HOH B 6 406 22 HOH HOH . M 4 HOH B 7 407 98 HOH HOH . M 4 HOH B 8 408 86 HOH HOH . M 4 HOH B 9 409 28 HOH HOH . M 4 HOH B 10 410 57 HOH HOH . M 4 HOH B 11 411 20 HOH HOH . M 4 HOH B 12 412 112 HOH HOH . M 4 HOH B 13 413 31 HOH HOH . M 4 HOH B 14 414 29 HOH HOH . M 4 HOH B 15 415 113 HOH HOH . M 4 HOH B 16 416 108 HOH HOH . M 4 HOH B 17 417 94 HOH HOH . M 4 HOH B 18 418 110 HOH HOH . N 4 HOH C 1 401 40 HOH HOH . N 4 HOH C 2 402 118 HOH HOH . N 4 HOH C 3 403 48 HOH HOH . N 4 HOH C 4 404 58 HOH HOH . N 4 HOH C 5 405 43 HOH HOH . N 4 HOH C 6 406 39 HOH HOH . N 4 HOH C 7 407 41 HOH HOH . N 4 HOH C 8 408 51 HOH HOH . N 4 HOH C 9 409 87 HOH HOH . N 4 HOH C 10 410 50 HOH HOH . N 4 HOH C 11 411 91 HOH HOH . N 4 HOH C 12 412 107 HOH HOH . N 4 HOH C 13 413 55 HOH HOH . N 4 HOH C 14 414 90 HOH HOH . N 4 HOH C 15 415 97 HOH HOH . N 4 HOH C 16 416 37 HOH HOH . N 4 HOH C 17 417 117 HOH HOH . N 4 HOH C 18 418 99 HOH HOH . N 4 HOH C 19 419 114 HOH HOH . N 4 HOH C 20 420 115 HOH HOH . N 4 HOH C 21 421 96 HOH HOH . O 4 HOH D 1 401 70 HOH HOH . O 4 HOH D 2 402 66 HOH HOH . O 4 HOH D 3 403 88 HOH HOH . O 4 HOH D 4 404 26 HOH HOH . O 4 HOH D 5 405 83 HOH HOH . O 4 HOH D 6 406 119 HOH HOH . O 4 HOH D 7 407 64 HOH HOH . O 4 HOH D 8 408 74 HOH HOH . O 4 HOH D 9 409 106 HOH HOH . O 4 HOH D 10 410 78 HOH HOH . O 4 HOH D 11 411 68 HOH HOH . O 4 HOH D 12 412 109 HOH HOH . O 4 HOH D 13 413 73 HOH HOH . O 4 HOH D 14 414 102 HOH HOH . O 4 HOH D 15 415 67 HOH HOH . O 4 HOH D 16 416 80 HOH HOH . O 4 HOH D 17 417 85 HOH HOH . O 4 HOH D 18 418 62 HOH HOH . O 4 HOH D 19 419 89 HOH HOH . O 4 HOH D 20 420 93 HOH HOH . O 4 HOH D 21 421 60 HOH HOH . O 4 HOH D 22 422 101 HOH HOH . O 4 HOH D 23 423 105 HOH HOH . O 4 HOH D 24 424 100 HOH HOH . O 4 HOH D 25 425 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 -19.144 22.665 -12.374 1 86.17 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . E 2 -18.465 23.534 -11.381 1 93 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . E 2 -18.491 21.314 -12.355 1 84.33 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . E 2 -19.193 23.196 -13.859 1 84.81 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . E 2 -18.788 24.468 -14.399 1 83.41 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . E 2 -17.739 24.175 -15.44 1 83.13 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . E 2 -17.69 25.242 -16.411 1 83.28 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . E 2 -16.319 24.024 -14.873 1 85.08 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . E 2 -15.748 22.772 -15.219 1 84.67 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . E 2 -15.561 25.208 -15.477 1 88.05 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . E 2 -14.172 24.936 -15.664 1 92.25 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . E 2 -16.344 25.421 -16.77 1 88.69 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . E 2 -16.153 26.737 -17.375 1 92.63 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . E 2 -16.569 27.953 -16.9 1 92.55 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . E 2 -16.216 28.97 -17.649 1 94.52 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . E 2 -15.521 28.382 -18.696 1 97.06 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . E 2 -14.879 28.915 -19.835 1 100.88 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . E 2 -14.819 30.222 -20.116 1 105.26 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . E 2 -14.282 28.05 -20.688 1 98.92 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . E 2 -14.326 26.741 -20.412 1 96.9 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . E 2 -14.894 26.123 -19.371 1 94.82 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . E 2 -15.478 27.004 -18.543 1 94.99 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . E 2 -20.662 22.391 -11.966 1 83.47 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . E 2 -21.895 21.571 -12.573 1 77.3 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . E 2 -21.479 20.188 -12.906 1 76.86 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . E 2 -23.051 21.781 -11.672 1 78.64 -1 O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . E 2 -22.174 22.393 -13.911 1 73.52 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . E 2 -22.037 21.778 -15.211 1 77.38 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . E 2 -23.182 22.173 -16.12 1 78.31 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . E 2 -24.423 21.619 -15.624 1 79.14 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . E 2 -23.435 23.674 -16.293 1 80.53 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . E 2 -23.839 23.943 -17.632 1 84.38 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . E 2 -24.59 23.926 -15.323 1 79.59 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . E 2 -25.335 25.091 -15.643 1 78.04 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . E 2 -25.377 22.641 -15.532 1 78.69 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . E 2 -26.367 22.277 -14.459 1 76.78 1 N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . E 2 -26.083 22.165 -13.151 1 79.41 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . E 2 -27.077 21.815 -12.252 1 80.08 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . E 2 -26.807 21.67 -10.779 1 79.63 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . E 2 -27.76 21.714 -9.978 1 82.15 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . E 2 -25.54 21.5 -10.389 1 75.22 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . E 2 -28.367 21.586 -12.74 1 74.18 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . E 2 -28.627 21.709 -14.091 1 70 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . E 2 -27.607 22.058 -14.945 1 72.69 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #