data_5OIN
#
_model_server_result.job_id            R7GkXQDjmmHk6HkTK5d50A 
_model_server_result.datetime_utc      '2024-12-01 11:53:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oin 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    5OIN 
#
_exptl.entry_id    5OIN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              220.271 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-(1-pyrimidin-2-ylpiperidin-4-yl)ethanamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OIN 
_cell.length_a            92.07 
_cell.length_b            101.08 
_cell.length_c            186.96 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OIN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
#
_chem_comp.formula           'C11 H16 N4 O' 
_chem_comp.formula_weight    220.271 
_chem_comp.id                9W2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-(1-pyrimidin-2-ylpiperidin-4-yl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C13 9W2 doub 1 n y 
C14 C15 9W2 sing 2 n y 
C13 N12 9W2 sing 3 n y 
C15 N16 9W2 doub 4 n y 
C01 C02 9W2 sing 5 n n 
N12 C11 9W2 doub 6 n y 
N04 C02 9W2 sing 7 n n 
N04 C05 9W2 sing 8 n n 
N16 C11 9W2 sing 9 n y 
C11 N08 9W2 sing 10 n n 
C06 C05 9W2 sing 11 n n 
C06 C07 9W2 sing 12 n n 
C02 O03 9W2 doub 13 n n 
C10 C05 9W2 sing 14 n n 
C10 C09 9W2 sing 15 n n 
N08 C07 9W2 sing 16 n n 
N08 C09 9W2 sing 17 n n 
C10 H1 9W2 sing 18 n n 
C10 H2 9W2 sing 19 n n 
C13 H3 9W2 sing 20 n n 
C15 H4 9W2 sing 21 n n 
C01 H5 9W2 sing 22 n n 
C01 H6 9W2 sing 23 n n 
C01 H7 9W2 sing 24 n n 
N04 H8 9W2 sing 25 n n 
C05 H9 9W2 sing 26 n n 
C06 H10 9W2 sing 27 n n 
C06 H11 9W2 sing 28 n n 
C07 H12 9W2 sing 29 n n 
C07 H13 9W2 sing 30 n n 
C09 H14 9W2 sing 31 n n 
C09 H15 9W2 sing 32 n n 
C14 H16 9W2 sing 33 n n 
#
_atom_sites.entry_id                     5OIN 
_atom_sites.fract_transf_matrix[1][1]    0.010861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 1 NAD NXX . 
F 3 9W2 B 1 301 3 9W2 LIG . 
G 2 NAD B 1 302 2 NAD NXX . 
H 3 9W2 C 1 301 1 9W2 LIG . 
I 2 NAD C 1 302 3 NAD NXX . 
J 3 9W2 D 1 301 2 9W2 LIG . 
K 2 NAD D 1 302 4 NAD NXX . 
L 4 HOH A 1 401 18 HOH HOH . 
L 4 HOH A 2 402 54 HOH HOH . 
L 4 HOH A 3 403 9 HOH HOH . 
L 4 HOH A 4 404 111 HOH HOH . 
L 4 HOH A 5 405 17 HOH HOH . 
L 4 HOH A 6 406 12 HOH HOH . 
L 4 HOH A 7 407 77 HOH HOH . 
L 4 HOH A 8 408 15 HOH HOH . 
L 4 HOH A 9 409 13 HOH HOH . 
L 4 HOH A 10 410 2 HOH HOH . 
L 4 HOH A 11 411 116 HOH HOH . 
L 4 HOH A 12 412 103 HOH HOH . 
L 4 HOH A 13 413 92 HOH HOH . 
M 4 HOH B 1 401 685 HOH HOH . 
M 4 HOH B 2 402 24 HOH HOH . 
M 4 HOH B 3 403 25 HOH HOH . 
M 4 HOH B 4 404 23 HOH HOH . 
M 4 HOH B 5 405 33 HOH HOH . 
M 4 HOH B 6 406 22 HOH HOH . 
M 4 HOH B 7 407 98 HOH HOH . 
M 4 HOH B 8 408 86 HOH HOH . 
M 4 HOH B 9 409 28 HOH HOH . 
M 4 HOH B 10 410 57 HOH HOH . 
M 4 HOH B 11 411 20 HOH HOH . 
M 4 HOH B 12 412 112 HOH HOH . 
M 4 HOH B 13 413 31 HOH HOH . 
M 4 HOH B 14 414 29 HOH HOH . 
M 4 HOH B 15 415 113 HOH HOH . 
M 4 HOH B 16 416 108 HOH HOH . 
M 4 HOH B 17 417 94 HOH HOH . 
M 4 HOH B 18 418 110 HOH HOH . 
N 4 HOH C 1 401 40 HOH HOH . 
N 4 HOH C 2 402 118 HOH HOH . 
N 4 HOH C 3 403 48 HOH HOH . 
N 4 HOH C 4 404 58 HOH HOH . 
N 4 HOH C 5 405 43 HOH HOH . 
N 4 HOH C 6 406 39 HOH HOH . 
N 4 HOH C 7 407 41 HOH HOH . 
N 4 HOH C 8 408 51 HOH HOH . 
N 4 HOH C 9 409 87 HOH HOH . 
N 4 HOH C 10 410 50 HOH HOH . 
N 4 HOH C 11 411 91 HOH HOH . 
N 4 HOH C 12 412 107 HOH HOH . 
N 4 HOH C 13 413 55 HOH HOH . 
N 4 HOH C 14 414 90 HOH HOH . 
N 4 HOH C 15 415 97 HOH HOH . 
N 4 HOH C 16 416 37 HOH HOH . 
N 4 HOH C 17 417 117 HOH HOH . 
N 4 HOH C 18 418 99 HOH HOH . 
N 4 HOH C 19 419 114 HOH HOH . 
N 4 HOH C 20 420 115 HOH HOH . 
N 4 HOH C 21 421 96 HOH HOH . 
O 4 HOH D 1 401 70 HOH HOH . 
O 4 HOH D 2 402 66 HOH HOH . 
O 4 HOH D 3 403 88 HOH HOH . 
O 4 HOH D 4 404 26 HOH HOH . 
O 4 HOH D 5 405 83 HOH HOH . 
O 4 HOH D 6 406 119 HOH HOH . 
O 4 HOH D 7 407 64 HOH HOH . 
O 4 HOH D 8 408 74 HOH HOH . 
O 4 HOH D 9 409 106 HOH HOH . 
O 4 HOH D 10 410 78 HOH HOH . 
O 4 HOH D 11 411 68 HOH HOH . 
O 4 HOH D 12 412 109 HOH HOH . 
O 4 HOH D 13 413 73 HOH HOH . 
O 4 HOH D 14 414 102 HOH HOH . 
O 4 HOH D 15 415 67 HOH HOH . 
O 4 HOH D 16 416 80 HOH HOH . 
O 4 HOH D 17 417 85 HOH HOH . 
O 4 HOH D 18 418 62 HOH HOH . 
O 4 HOH D 19 419 89 HOH HOH . 
O 4 HOH D 20 420 93 HOH HOH . 
O 4 HOH D 21 421 60 HOH HOH . 
O 4 HOH D 22 422 101 HOH HOH . 
O 4 HOH D 23 423 105 HOH HOH . 
O 4 HOH D 24 424 100 HOH HOH . 
O 4 HOH D 25 425 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 9W2 . . . F 3 -64.592 21.761 -10.555 1 90.49 ? C10 9W2 301 B 1 
HETATM 2 N N12 9W2 . . . F 3 -68.979 21.525 -9.225 1 97.4 ? N12 9W2 301 B 1 
HETATM 3 C C13 9W2 . . . F 3 -69.808 20.752 -8.499 1 94.95 ? C13 9W2 301 B 1 
HETATM 4 C C15 9W2 . . . F 3 -68.503 18.849 -8.932 1 95.98 ? C15 9W2 301 B 1 
HETATM 5 C C01 9W2 . . . F 3 -61.182 24.644 -10.056 1 96.95 ? C01 9W2 301 B 1 
HETATM 6 C C02 9W2 . . . F 3 -62.289 23.923 -10.778 1 97.18 ? C02 9W2 301 B 1 
HETATM 7 O O03 9W2 . . . F 3 -62.106 23.374 -11.861 1 99.33 ? O03 9W2 301 B 1 
HETATM 8 N N04 9W2 . . . F 3 -63.487 23.928 -10.175 1 94.03 ? N04 9W2 301 B 1 
HETATM 9 C C05 9W2 . . . F 3 -64.669 23.272 -10.739 1 91.26 ? C05 9W2 301 B 1 
HETATM 10 C C06 9W2 . . . F 3 -65.95 23.834 -10.141 1 90.6 ? C06 9W2 301 B 1 
HETATM 11 C C07 9W2 . . . F 3 -67.172 23.106 -10.708 1 91.64 ? C07 9W2 301 B 1 
HETATM 12 N N08 9W2 . . . F 3 -67.054 21.64 -10.547 1 95.33 ? N08 9W2 301 B 1 
HETATM 13 C C09 9W2 . . . F 3 -65.83 21.096 -11.147 1 92.61 ? C09 9W2 301 B 1 
HETATM 14 C C11 9W2 . . . F 3 -67.917 20.881 -9.785 1 98.08 ? C11 9W2 301 B 1 
HETATM 15 C C14 9W2 . . . F 3 -69.622 19.396 -8.321 1 94.7 ? C14 9W2 301 B 1 
HETATM 16 N N16 9W2 . . . F 3 -67.64 19.563 -9.682 1 96.46 ? N16 9W2 301 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#