data_5OIN
#
_model_server_result.job_id            V8J5XkvDmjGsl-g_6bAeXA 
_model_server_result.datetime_utc      '2024-12-01 11:46:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oin 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    5OIN 
#
_exptl.entry_id    5OIN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OIN 
_cell.length_a            92.07 
_cell.length_b            101.08 
_cell.length_c            186.96 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OIN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 270 n n 
PA O2A NAD sing 271 n n 
PA O5B NAD sing 272 n n 
PA O3 NAD sing 273 n n 
O2A HOA2 NAD sing 274 n n 
O5B C5B NAD sing 275 n n 
C5B C4B NAD sing 276 n n 
C5B H51A NAD sing 277 n n 
C5B H52A NAD sing 278 n n 
C4B O4B NAD sing 279 n n 
C4B C3B NAD sing 280 n n 
C4B H4B NAD sing 281 n n 
O4B C1B NAD sing 282 n n 
C3B O3B NAD sing 283 n n 
C3B C2B NAD sing 284 n n 
C3B H3B NAD sing 285 n n 
O3B HO3A NAD sing 286 n n 
C2B O2B NAD sing 287 n n 
C2B C1B NAD sing 288 n n 
C2B H2B NAD sing 289 n n 
O2B HO2A NAD sing 290 n n 
C1B N9A NAD sing 291 n n 
C1B H1B NAD sing 292 n n 
N9A C8A NAD sing 293 n y 
N9A C4A NAD sing 294 n y 
C8A N7A NAD doub 295 n y 
C8A H8A NAD sing 296 n n 
N7A C5A NAD sing 297 n y 
C5A C6A NAD sing 298 n y 
C5A C4A NAD doub 299 n y 
C6A N6A NAD sing 300 n n 
C6A N1A NAD doub 301 n y 
N6A H61A NAD sing 302 n n 
N6A H62A NAD sing 303 n n 
N1A C2A NAD sing 304 n y 
C2A N3A NAD doub 305 n y 
C2A H2A NAD sing 306 n n 
N3A C4A NAD sing 307 n y 
O3 PN NAD sing 308 n n 
PN O1N NAD doub 309 n n 
PN O2N NAD sing 310 n n 
PN O5D NAD sing 311 n n 
O5D C5D NAD sing 312 n n 
C5D C4D NAD sing 313 n n 
C5D H51N NAD sing 314 n n 
C5D H52N NAD sing 315 n n 
C4D O4D NAD sing 316 n n 
C4D C3D NAD sing 317 n n 
C4D H4D NAD sing 318 n n 
O4D C1D NAD sing 319 n n 
C3D O3D NAD sing 320 n n 
C3D C2D NAD sing 321 n n 
C3D H3D NAD sing 322 n n 
O3D HO3N NAD sing 323 n n 
C2D O2D NAD sing 324 n n 
C2D C1D NAD sing 325 n n 
C2D H2D NAD sing 326 n n 
O2D HO2N NAD sing 327 n n 
C1D N1N NAD sing 328 n n 
C1D H1D NAD sing 329 n n 
N1N C2N NAD sing 330 n y 
N1N C6N NAD doub 331 n y 
C2N C3N NAD doub 332 n y 
C2N H2N NAD sing 333 n n 
C3N C7N NAD sing 334 n n 
C3N C4N NAD sing 335 n y 
C7N O7N NAD doub 336 n n 
C7N N7N NAD sing 337 n n 
N7N H71N NAD sing 338 n n 
N7N H72N NAD sing 339 n n 
C4N C5N NAD doub 340 n y 
C4N H4N NAD sing 341 n n 
C5N C6N NAD sing 342 n y 
C5N H5N NAD sing 343 n n 
C6N H6N NAD sing 344 n n 
#
_atom_sites.entry_id                     5OIN 
_atom_sites.fract_transf_matrix[1][1]    0.010861 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 1 NAD NXX . 
F 3 9W2 B 1 301 3 9W2 LIG . 
G 2 NAD B 1 302 2 NAD NXX . 
H 3 9W2 C 1 301 1 9W2 LIG . 
I 2 NAD C 1 302 3 NAD NXX . 
J 3 9W2 D 1 301 2 9W2 LIG . 
K 2 NAD D 1 302 4 NAD NXX . 
L 4 HOH A 1 401 18 HOH HOH . 
L 4 HOH A 2 402 54 HOH HOH . 
L 4 HOH A 3 403 9 HOH HOH . 
L 4 HOH A 4 404 111 HOH HOH . 
L 4 HOH A 5 405 17 HOH HOH . 
L 4 HOH A 6 406 12 HOH HOH . 
L 4 HOH A 7 407 77 HOH HOH . 
L 4 HOH A 8 408 15 HOH HOH . 
L 4 HOH A 9 409 13 HOH HOH . 
L 4 HOH A 10 410 2 HOH HOH . 
L 4 HOH A 11 411 116 HOH HOH . 
L 4 HOH A 12 412 103 HOH HOH . 
L 4 HOH A 13 413 92 HOH HOH . 
M 4 HOH B 1 401 685 HOH HOH . 
M 4 HOH B 2 402 24 HOH HOH . 
M 4 HOH B 3 403 25 HOH HOH . 
M 4 HOH B 4 404 23 HOH HOH . 
M 4 HOH B 5 405 33 HOH HOH . 
M 4 HOH B 6 406 22 HOH HOH . 
M 4 HOH B 7 407 98 HOH HOH . 
M 4 HOH B 8 408 86 HOH HOH . 
M 4 HOH B 9 409 28 HOH HOH . 
M 4 HOH B 10 410 57 HOH HOH . 
M 4 HOH B 11 411 20 HOH HOH . 
M 4 HOH B 12 412 112 HOH HOH . 
M 4 HOH B 13 413 31 HOH HOH . 
M 4 HOH B 14 414 29 HOH HOH . 
M 4 HOH B 15 415 113 HOH HOH . 
M 4 HOH B 16 416 108 HOH HOH . 
M 4 HOH B 17 417 94 HOH HOH . 
M 4 HOH B 18 418 110 HOH HOH . 
N 4 HOH C 1 401 40 HOH HOH . 
N 4 HOH C 2 402 118 HOH HOH . 
N 4 HOH C 3 403 48 HOH HOH . 
N 4 HOH C 4 404 58 HOH HOH . 
N 4 HOH C 5 405 43 HOH HOH . 
N 4 HOH C 6 406 39 HOH HOH . 
N 4 HOH C 7 407 41 HOH HOH . 
N 4 HOH C 8 408 51 HOH HOH . 
N 4 HOH C 9 409 87 HOH HOH . 
N 4 HOH C 10 410 50 HOH HOH . 
N 4 HOH C 11 411 91 HOH HOH . 
N 4 HOH C 12 412 107 HOH HOH . 
N 4 HOH C 13 413 55 HOH HOH . 
N 4 HOH C 14 414 90 HOH HOH . 
N 4 HOH C 15 415 97 HOH HOH . 
N 4 HOH C 16 416 37 HOH HOH . 
N 4 HOH C 17 417 117 HOH HOH . 
N 4 HOH C 18 418 99 HOH HOH . 
N 4 HOH C 19 419 114 HOH HOH . 
N 4 HOH C 20 420 115 HOH HOH . 
N 4 HOH C 21 421 96 HOH HOH . 
O 4 HOH D 1 401 70 HOH HOH . 
O 4 HOH D 2 402 66 HOH HOH . 
O 4 HOH D 3 403 88 HOH HOH . 
O 4 HOH D 4 404 26 HOH HOH . 
O 4 HOH D 5 405 83 HOH HOH . 
O 4 HOH D 6 406 119 HOH HOH . 
O 4 HOH D 7 407 64 HOH HOH . 
O 4 HOH D 8 408 74 HOH HOH . 
O 4 HOH D 9 409 106 HOH HOH . 
O 4 HOH D 10 410 78 HOH HOH . 
O 4 HOH D 11 411 68 HOH HOH . 
O 4 HOH D 12 412 109 HOH HOH . 
O 4 HOH D 13 413 73 HOH HOH . 
O 4 HOH D 14 414 102 HOH HOH . 
O 4 HOH D 15 415 67 HOH HOH . 
O 4 HOH D 16 416 80 HOH HOH . 
O 4 HOH D 17 417 85 HOH HOH . 
O 4 HOH D 18 418 62 HOH HOH . 
O 4 HOH D 19 419 89 HOH HOH . 
O 4 HOH D 20 420 93 HOH HOH . 
O 4 HOH D 21 421 60 HOH HOH . 
O 4 HOH D 22 422 101 HOH HOH . 
O 4 HOH D 23 423 105 HOH HOH . 
O 4 HOH D 24 424 100 HOH HOH . 
O 4 HOH D 25 425 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 2 -52.682 0.387 -34.934 1 80.95 ? PA NAD 302 C 1 
HETATM 2 O O1A NAD . . . I 2 -54.062 0.303 -35.477 1 83.85 ? O1A NAD 302 C 1 
HETATM 3 O O2A NAD . . . I 2 -51.772 -0.697 -35.557 1 80.03 ? O2A NAD 302 C 1 
HETATM 4 O O5B NAD . . . I 2 -52.695 0.275 -33.328 1 77.82 ? O5B NAD 302 C 1 
HETATM 5 C C5B NAD . . . I 2 -53.813 0.573 -32.47 1 78.11 ? C5B NAD 302 C 1 
HETATM 6 C C4B NAD . . . I 2 -54.062 -0.66 -31.647 1 83.31 ? C4B NAD 302 C 1 
HETATM 7 O O4B NAD . . . I 2 -55.109 -0.431 -30.674 1 86.44 ? O4B NAD 302 C 1 
HETATM 8 C C3B NAD . . . I 2 -54.478 -1.894 -32.455 1 86.25 ? C3B NAD 302 C 1 
HETATM 9 O O3B NAD . . . I 2 -53.603 -2.98 -32.179 1 88.06 ? O3B NAD 302 C 1 
HETATM 10 C C2B NAD . . . I 2 -55.906 -2.163 -31.978 1 89.04 ? C2B NAD 302 C 1 
HETATM 11 O O2B NAD . . . I 2 -56.31 -3.529 -32.055 1 96.64 ? O2B NAD 302 C 1 
HETATM 12 C C1B NAD . . . I 2 -55.817 -1.641 -30.559 1 86.99 ? C1B NAD 302 C 1 
HETATM 13 N N9A NAD . . . I 2 -57.11 -1.449 -29.909 1 87.87 ? N9A NAD 302 C 1 
HETATM 14 C C8A NAD . . . I 2 -58.208 -0.784 -30.388 1 87.78 ? C8A NAD 302 C 1 
HETATM 15 N N7A NAD . . . I 2 -59.249 -0.826 -29.59 1 89.65 ? N7A NAD 302 C 1 
HETATM 16 C C5A NAD . . . I 2 -58.805 -1.572 -28.508 1 88.25 ? C5A NAD 302 C 1 
HETATM 17 C C6A NAD . . . I 2 -59.439 -2.001 -27.325 1 88.24 ? C6A NAD 302 C 1 
HETATM 18 N N6A NAD . . . I 2 -60.71 -1.731 -27.024 1 89.74 ? N6A NAD 302 C 1 
HETATM 19 N N1A NAD . . . I 2 -58.715 -2.744 -26.454 1 88.04 ? N1A NAD 302 C 1 
HETATM 20 C C2A NAD . . . I 2 -57.441 -3.031 -26.756 1 84.48 ? C2A NAD 302 C 1 
HETATM 21 N N3A NAD . . . I 2 -56.738 -2.687 -27.84 1 80.37 ? N3A NAD 302 C 1 
HETATM 22 C C4A NAD . . . I 2 -57.483 -1.957 -28.686 1 86.24 ? C4A NAD 302 C 1 
HETATM 23 O O3 NAD . . . I 2 -51.994 1.775 -35.299 1 78.55 ? O3 NAD 302 C 1 
HETATM 24 P PN NAD . . . I 2 -50.675 2.443 -34.688 1 78.59 ? PN NAD 302 C 1 
HETATM 25 O O1N NAD . . . I 2 -49.627 1.415 -34.478 1 77.51 ? O1N NAD 302 C 1 
HETATM 26 O O2N NAD . . . I 2 -50.376 3.645 -35.495 1 80.55 -1 O2N NAD 302 C 1 
HETATM 27 O O5D NAD . . . I 2 -51.227 2.959 -33.292 1 75.88 ? O5D NAD 302 C 1 
HETATM 28 C C5D NAD . . . I 2 -50.554 2.617 -32.067 1 77.6 ? C5D NAD 302 C 1 
HETATM 29 C C4D NAD . . . I 2 -50.552 3.787 -31.113 1 77.9 ? C4D NAD 302 C 1 
HETATM 30 O O4D NAD . . . I 2 -49.581 4.78 -31.527 1 73.48 ? O4D NAD 302 C 1 
HETATM 31 C C3D NAD . . . I 2 -51.877 4.53 -30.959 1 78.8 ? C3D NAD 302 C 1 
HETATM 32 O O3D NAD . . . I 2 -51.996 4.975 -29.61 1 84.58 ? O3D NAD 302 C 1 
HETATM 33 C C2D NAD . . . I 2 -51.699 5.7 -31.92 1 74.24 ? C2D NAD 302 C 1 
HETATM 34 O O2D NAD . . . I 2 -52.557 6.76 -31.544 1 75.19 ? O2D NAD 302 C 1 
HETATM 35 C C1D NAD . . . I 2 -50.219 6.012 -31.7 1 72.01 ? C1D NAD 302 C 1 
HETATM 36 N N1N NAD . . . I 2 -49.506 6.767 -32.813 1 73.13 1 N1N NAD 302 C 1 
HETATM 37 C C2N NAD . . . I 2 -49.582 6.487 -34.128 1 73.84 ? C2N NAD 302 C 1 
HETATM 38 C C3N NAD . . . I 2 -48.878 7.251 -35.04 1 76.17 ? C3N NAD 302 C 1 
HETATM 39 C C7N NAD . . . I 2 -48.911 6.996 -36.519 1 81.27 ? C7N NAD 302 C 1 
HETATM 40 O O7N NAD . . . I 2 -48.59 7.903 -37.299 1 83.43 ? O7N NAD 302 C 1 
HETATM 41 N N7N NAD . . . I 2 -49.287 5.795 -36.938 1 85.47 ? N7N NAD 302 C 1 
HETATM 42 C C4N NAD . . . I 2 -48.098 8.308 -34.565 1 75.12 ? C4N NAD 302 C 1 
HETATM 43 C C5N NAD . . . I 2 -48.041 8.571 -33.209 1 72.64 ? C5N NAD 302 C 1 
HETATM 44 C C6N NAD . . . I 2 -48.757 7.784 -32.337 1 72.15 ? C6N NAD 302 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#