data_5OIP # _model_server_result.job_id wW51uVmf1nV_Q4yX1sjvwg _model_server_result.datetime_utc '2024-11-07 18:44:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5OIP # _exptl.entry_id 5OIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OIP _cell.length_a 99.14 _cell.length_b 99.14 _cell.length_c 141.52 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 49.57 85.857759 0 3 'crystal symmetry operation' 7_553 y,x,-z-4/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -188.693333 4 'crystal symmetry operation' 10_663 -y+1,-x+1,-z-4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 49.57 85.857759 -188.693333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 380 n n P O2 PO4 sing 381 n n P O3 PO4 sing 382 n n P O4 PO4 sing 383 n n # _atom_sites.entry_id 5OIP _atom_sites.fract_transf_matrix[1][1] 0.010087 _atom_sites.fract_transf_matrix[1][2] 0.005824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 4000 NAD NXX . C 3 9WE A 1 302 1 9WE LIG . D 4 PO4 A 1 303 1 PO4 PO4 . E 5 HOH A 1 401 92 HOH HOH . E 5 HOH A 2 402 82 HOH HOH . E 5 HOH A 3 403 205 HOH HOH . E 5 HOH A 4 404 63 HOH HOH . E 5 HOH A 5 405 148 HOH HOH . E 5 HOH A 6 406 289 HOH HOH . E 5 HOH A 7 407 345 HOH HOH . E 5 HOH A 8 408 313 HOH HOH . E 5 HOH A 9 409 27 HOH HOH . E 5 HOH A 10 410 198 HOH HOH . E 5 HOH A 11 411 114 HOH HOH . E 5 HOH A 12 412 68 HOH HOH . E 5 HOH A 13 413 105 HOH HOH . E 5 HOH A 14 414 72 HOH HOH . E 5 HOH A 15 415 188 HOH HOH . E 5 HOH A 16 416 70 HOH HOH . E 5 HOH A 17 417 120 HOH HOH . E 5 HOH A 18 418 61 HOH HOH . E 5 HOH A 19 419 7 HOH HOH . E 5 HOH A 20 420 4 HOH HOH . E 5 HOH A 21 421 275 HOH HOH . E 5 HOH A 22 422 113 HOH HOH . E 5 HOH A 23 423 3 HOH HOH . E 5 HOH A 24 424 47 HOH HOH . E 5 HOH A 25 425 163 HOH HOH . E 5 HOH A 26 426 259 HOH HOH . E 5 HOH A 27 427 143 HOH HOH . E 5 HOH A 28 428 35 HOH HOH . E 5 HOH A 29 429 158 HOH HOH . E 5 HOH A 30 430 191 HOH HOH . E 5 HOH A 31 431 302 HOH HOH . E 5 HOH A 32 432 122 HOH HOH . E 5 HOH A 33 433 199 HOH HOH . E 5 HOH A 34 434 115 HOH HOH . E 5 HOH A 35 435 42 HOH HOH . E 5 HOH A 36 436 95 HOH HOH . E 5 HOH A 37 437 332 HOH HOH . E 5 HOH A 38 438 51 HOH HOH . E 5 HOH A 39 439 48 HOH HOH . E 5 HOH A 40 440 346 HOH HOH . E 5 HOH A 41 441 296 HOH HOH . E 5 HOH A 42 442 134 HOH HOH . E 5 HOH A 43 443 76 HOH HOH . E 5 HOH A 44 444 137 HOH HOH . E 5 HOH A 45 445 161 HOH HOH . E 5 HOH A 46 446 116 HOH HOH . E 5 HOH A 47 447 326 HOH HOH . E 5 HOH A 48 448 73 HOH HOH . E 5 HOH A 49 449 136 HOH HOH . E 5 HOH A 50 450 218 HOH HOH . E 5 HOH A 51 451 208 HOH HOH . E 5 HOH A 52 452 182 HOH HOH . E 5 HOH A 53 453 19 HOH HOH . E 5 HOH A 54 454 141 HOH HOH . E 5 HOH A 55 455 88 HOH HOH . E 5 HOH A 56 456 108 HOH HOH . E 5 HOH A 57 457 142 HOH HOH . E 5 HOH A 58 458 125 HOH HOH . E 5 HOH A 59 459 254 HOH HOH . E 5 HOH A 60 460 103 HOH HOH . E 5 HOH A 61 461 77 HOH HOH . E 5 HOH A 62 462 324 HOH HOH . E 5 HOH A 63 463 59 HOH HOH . E 5 HOH A 64 464 96 HOH HOH . E 5 HOH A 65 465 53 HOH HOH . E 5 HOH A 66 466 32 HOH HOH . E 5 HOH A 67 467 71 HOH HOH . E 5 HOH A 68 468 79 HOH HOH . E 5 HOH A 69 469 40 HOH HOH . E 5 HOH A 70 470 112 HOH HOH . E 5 HOH A 71 471 84 HOH HOH . E 5 HOH A 72 472 98 HOH HOH . E 5 HOH A 73 473 140 HOH HOH . E 5 HOH A 74 474 64 HOH HOH . E 5 HOH A 75 475 75 HOH HOH . E 5 HOH A 76 476 185 HOH HOH . E 5 HOH A 77 477 341 HOH HOH . E 5 HOH A 78 478 83 HOH HOH . E 5 HOH A 79 479 1 HOH HOH . E 5 HOH A 80 480 57 HOH HOH . E 5 HOH A 81 481 74 HOH HOH . E 5 HOH A 82 482 111 HOH HOH . E 5 HOH A 83 483 46 HOH HOH . E 5 HOH A 84 484 150 HOH HOH . E 5 HOH A 85 485 104 HOH HOH . E 5 HOH A 86 486 168 HOH HOH . E 5 HOH A 87 487 131 HOH HOH . E 5 HOH A 88 488 197 HOH HOH . E 5 HOH A 89 489 176 HOH HOH . E 5 HOH A 90 490 38 HOH HOH . E 5 HOH A 91 491 80 HOH HOH . E 5 HOH A 92 492 283 HOH HOH . E 5 HOH A 93 493 271 HOH HOH . E 5 HOH A 94 494 335 HOH HOH . E 5 HOH A 95 495 193 HOH HOH . E 5 HOH A 96 496 130 HOH HOH . E 5 HOH A 97 497 97 HOH HOH . E 5 HOH A 98 498 187 HOH HOH . E 5 HOH A 99 499 90 HOH HOH . E 5 HOH A 100 500 39 HOH HOH . E 5 HOH A 101 501 110 HOH HOH . E 5 HOH A 102 502 159 HOH HOH . E 5 HOH A 103 503 184 HOH HOH . E 5 HOH A 104 504 30 HOH HOH . E 5 HOH A 105 505 100 HOH HOH . E 5 HOH A 106 506 317 HOH HOH . E 5 HOH A 107 507 190 HOH HOH . E 5 HOH A 108 508 189 HOH HOH . E 5 HOH A 109 509 229 HOH HOH . E 5 HOH A 110 510 60 HOH HOH . E 5 HOH A 111 511 330 HOH HOH . E 5 HOH A 112 512 20 HOH HOH . E 5 HOH A 113 513 145 HOH HOH . E 5 HOH A 114 514 36 HOH HOH . E 5 HOH A 115 515 58 HOH HOH . E 5 HOH A 116 516 87 HOH HOH . E 5 HOH A 117 517 85 HOH HOH . E 5 HOH A 118 518 121 HOH HOH . E 5 HOH A 119 519 119 HOH HOH . E 5 HOH A 120 520 337 HOH HOH . E 5 HOH A 121 521 37 HOH HOH . E 5 HOH A 122 522 297 HOH HOH . E 5 HOH A 123 523 192 HOH HOH . E 5 HOH A 124 524 45 HOH HOH . E 5 HOH A 125 525 29 HOH HOH . E 5 HOH A 126 526 167 HOH HOH . E 5 HOH A 127 527 336 HOH HOH . E 5 HOH A 128 528 171 HOH HOH . E 5 HOH A 129 529 62 HOH HOH . E 5 HOH A 130 530 67 HOH HOH . E 5 HOH A 131 531 5 HOH HOH . E 5 HOH A 132 532 266 HOH HOH . E 5 HOH A 133 533 89 HOH HOH . E 5 HOH A 134 534 34 HOH HOH . E 5 HOH A 135 535 56 HOH HOH . E 5 HOH A 136 536 33 HOH HOH . E 5 HOH A 137 537 247 HOH HOH . E 5 HOH A 138 538 154 HOH HOH . E 5 HOH A 139 539 41 HOH HOH . E 5 HOH A 140 540 118 HOH HOH . E 5 HOH A 141 541 333 HOH HOH . E 5 HOH A 142 542 214 HOH HOH . E 5 HOH A 143 543 86 HOH HOH . E 5 HOH A 144 544 248 HOH HOH . E 5 HOH A 145 545 91 HOH HOH . E 5 HOH A 146 546 133 HOH HOH . E 5 HOH A 147 547 54 HOH HOH . E 5 HOH A 148 548 50 HOH HOH . E 5 HOH A 149 549 155 HOH HOH . E 5 HOH A 150 550 44 HOH HOH . E 5 HOH A 151 551 8 HOH HOH . E 5 HOH A 152 552 174 HOH HOH . E 5 HOH A 153 553 235 HOH HOH . E 5 HOH A 154 554 52 HOH HOH . E 5 HOH A 155 555 261 HOH HOH . E 5 HOH A 156 556 107 HOH HOH . E 5 HOH A 157 557 101 HOH HOH . E 5 HOH A 158 558 310 HOH HOH . E 5 HOH A 159 559 276 HOH HOH . E 5 HOH A 160 560 93 HOH HOH . E 5 HOH A 161 561 49 HOH HOH . E 5 HOH A 162 562 227 HOH HOH . E 5 HOH A 163 563 204 HOH HOH . E 5 HOH A 164 564 212 HOH HOH . E 5 HOH A 165 565 6 HOH HOH . E 5 HOH A 166 566 102 HOH HOH . E 5 HOH A 167 567 99 HOH HOH . E 5 HOH A 168 568 252 HOH HOH . E 5 HOH A 169 569 43 HOH HOH . E 5 HOH A 170 570 303 HOH HOH . E 5 HOH A 171 571 66 HOH HOH . E 5 HOH A 172 572 243 HOH HOH . E 5 HOH A 173 573 9 HOH HOH . E 5 HOH A 174 574 177 HOH HOH . E 5 HOH A 175 575 106 HOH HOH . E 5 HOH A 176 576 69 HOH HOH . E 5 HOH A 177 577 109 HOH HOH . E 5 HOH A 178 578 157 HOH HOH . E 5 HOH A 179 579 128 HOH HOH . E 5 HOH A 180 580 273 HOH HOH . E 5 HOH A 181 581 299 HOH HOH . E 5 HOH A 182 582 13 HOH HOH . E 5 HOH A 183 583 65 HOH HOH . E 5 HOH A 184 584 149 HOH HOH . E 5 HOH A 185 585 216 HOH HOH . E 5 HOH A 186 586 251 HOH HOH . E 5 HOH A 187 587 55 HOH HOH . E 5 HOH A 188 588 144 HOH HOH . E 5 HOH A 189 589 344 HOH HOH . E 5 HOH A 190 590 225 HOH HOH . E 5 HOH A 191 591 180 HOH HOH . E 5 HOH A 192 592 233 HOH HOH . E 5 HOH A 193 593 124 HOH HOH . E 5 HOH A 194 594 307 HOH HOH . E 5 HOH A 195 595 242 HOH HOH . E 5 HOH A 196 596 265 HOH HOH . E 5 HOH A 197 597 201 HOH HOH . E 5 HOH A 198 598 183 HOH HOH . E 5 HOH A 199 599 94 HOH HOH . E 5 HOH A 200 600 147 HOH HOH . E 5 HOH A 201 601 264 HOH HOH . E 5 HOH A 202 602 287 HOH HOH . E 5 HOH A 203 603 206 HOH HOH . E 5 HOH A 204 604 81 HOH HOH . E 5 HOH A 205 605 2 HOH HOH . E 5 HOH A 206 606 25 HOH HOH . E 5 HOH A 207 607 28 HOH HOH . E 5 HOH A 208 608 14 HOH HOH . E 5 HOH A 209 609 340 HOH HOH . E 5 HOH A 210 610 151 HOH HOH . E 5 HOH A 211 611 285 HOH HOH . E 5 HOH A 212 612 165 HOH HOH . E 5 HOH A 213 613 219 HOH HOH . E 5 HOH A 214 614 269 HOH HOH . E 5 HOH A 215 615 295 HOH HOH . E 5 HOH A 216 616 241 HOH HOH . E 5 HOH A 217 617 181 HOH HOH . E 5 HOH A 218 618 315 HOH HOH . E 5 HOH A 219 619 126 HOH HOH . E 5 HOH A 220 620 186 HOH HOH . E 5 HOH A 221 621 117 HOH HOH . E 5 HOH A 222 622 314 HOH HOH . E 5 HOH A 223 623 256 HOH HOH . E 5 HOH A 224 624 298 HOH HOH . E 5 HOH A 225 625 320 HOH HOH . E 5 HOH A 226 626 78 HOH HOH . E 5 HOH A 227 627 347 HOH HOH . E 5 HOH A 228 628 31 HOH HOH . E 5 HOH A 229 629 213 HOH HOH . E 5 HOH A 230 630 156 HOH HOH . E 5 HOH A 231 631 231 HOH HOH . E 5 HOH A 232 632 132 HOH HOH . E 5 HOH A 233 633 153 HOH HOH . E 5 HOH A 234 634 11 HOH HOH . E 5 HOH A 235 635 316 HOH HOH . E 5 HOH A 236 636 274 HOH HOH . E 5 HOH A 237 637 312 HOH HOH . E 5 HOH A 238 638 18 HOH HOH . E 5 HOH A 239 639 322 HOH HOH . E 5 HOH A 240 640 272 HOH HOH . E 5 HOH A 241 641 146 HOH HOH . E 5 HOH A 242 642 301 HOH HOH . E 5 HOH A 243 643 238 HOH HOH . E 5 HOH A 244 644 17 HOH HOH . E 5 HOH A 245 645 160 HOH HOH . E 5 HOH A 246 646 232 HOH HOH . E 5 HOH A 247 647 10 HOH HOH . E 5 HOH A 248 648 328 HOH HOH . E 5 HOH A 249 649 286 HOH HOH . E 5 HOH A 250 650 221 HOH HOH . E 5 HOH A 251 651 253 HOH HOH . E 5 HOH A 252 652 194 HOH HOH . E 5 HOH A 253 653 162 HOH HOH . E 5 HOH A 254 654 230 HOH HOH . E 5 HOH A 255 655 178 HOH HOH . E 5 HOH A 256 656 267 HOH HOH . E 5 HOH A 257 657 257 HOH HOH . E 5 HOH A 258 658 343 HOH HOH . E 5 HOH A 259 659 217 HOH HOH . E 5 HOH A 260 660 321 HOH HOH . E 5 HOH A 261 661 24 HOH HOH . E 5 HOH A 262 662 129 HOH HOH . E 5 HOH A 263 663 172 HOH HOH . E 5 HOH A 264 664 306 HOH HOH . E 5 HOH A 265 665 294 HOH HOH . E 5 HOH A 266 666 291 HOH HOH . E 5 HOH A 267 667 342 HOH HOH . E 5 HOH A 268 668 123 HOH HOH . E 5 HOH A 269 669 268 HOH HOH . E 5 HOH A 270 670 26 HOH HOH . E 5 HOH A 271 671 334 HOH HOH . E 5 HOH A 272 672 237 HOH HOH . E 5 HOH A 273 673 277 HOH HOH . E 5 HOH A 274 674 290 HOH HOH . E 5 HOH A 275 675 281 HOH HOH . E 5 HOH A 276 676 311 HOH HOH . E 5 HOH A 277 677 21 HOH HOH . E 5 HOH A 278 678 16 HOH HOH . E 5 HOH A 279 679 23 HOH HOH . E 5 HOH A 280 680 280 HOH HOH . E 5 HOH A 281 681 224 HOH HOH . E 5 HOH A 282 682 339 HOH HOH . E 5 HOH A 283 683 323 HOH HOH . E 5 HOH A 284 684 318 HOH HOH . E 5 HOH A 285 685 202 HOH HOH . E 5 HOH A 286 686 331 HOH HOH . E 5 HOH A 287 687 304 HOH HOH . E 5 HOH A 288 688 325 HOH HOH . E 5 HOH A 289 689 226 HOH HOH . E 5 HOH A 290 690 223 HOH HOH . E 5 HOH A 291 691 245 HOH HOH . E 5 HOH A 292 692 222 HOH HOH . E 5 HOH A 293 693 329 HOH HOH . E 5 HOH A 294 694 300 HOH HOH . E 5 HOH A 295 695 207 HOH HOH . E 5 HOH A 296 696 270 HOH HOH . E 5 HOH A 297 697 262 HOH HOH . E 5 HOH A 298 698 288 HOH HOH . E 5 HOH A 299 699 246 HOH HOH . E 5 HOH A 300 700 239 HOH HOH . E 5 HOH A 301 701 244 HOH HOH . E 5 HOH A 302 702 338 HOH HOH . E 5 HOH A 303 703 263 HOH HOH . E 5 HOH A 304 704 293 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 49.392 43.478 -76.5 1 109.2 ? P PO4 303 A 1 HETATM 2 O O1 PO4 . . . D 4 49.338 44.317 -77.797 1 108.65 ? O1 PO4 303 A 1 HETATM 3 O O2 PO4 . . . D 4 48.565 44.213 -75.343 1 108.96 ? O2 PO4 303 A 1 HETATM 4 O O3 PO4 . . . D 4 48.74 42.045 -76.785 1 109.56 ? O3 PO4 303 A 1 HETATM 5 O O4 PO4 . . . D 4 50.912 43.293 -76.036 1 109.17 ? O4 PO4 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #