data_5OJ1 # _model_server_result.job_id qcn14QpbP08NsB3a-u7Z5A _model_server_result.datetime_utc '2024-11-24 13:54:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5OJ1 # _exptl.entry_id 5OJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OJ1 _cell.length_a 100.839 _cell.length_b 100.839 _cell.length_c 189.354 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 289 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 337 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id 1S6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 1S6 _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.462 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H21 N3 O5 S' _chem_comp.formula_weight 403.452 _chem_comp.id 1S6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Oxacillin, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAV 1S6 sing 1 n n OAQ CAV 1S6 sing 2 n y OAQ NAN 1S6 sing 3 n y CAV CAY 1S6 doub 4 n y NAN CAX 1S6 doub 5 n y OAF CAU 1S6 doub 6 n n CAY CAU 1S6 sing 7 n n CAY CAX 1S6 sing 8 n y CAU N 1S6 sing 9 n n CAX CAW 1S6 sing 10 n n CAM CAW 1S6 doub 11 n y CAM CAK 1S6 sing 12 n y N CA 1S6 sing 13 n n CAW CAL 1S6 sing 14 n y CA C 1S6 sing 15 n n CA CB 1S6 sing 16 n n CAK CAI 1S6 doub 17 n y C OXT 1S6 doub 18 n n CAL CAJ 1S6 doub 19 n y CB SAR 1S6 sing 20 n n CB NAP 1S6 sing 21 n n SAR CBC 1S6 sing 22 n n CAI CAJ 1S6 sing 23 n y NAP CBB 1S6 sing 24 n n CBC CBB 1S6 sing 25 n n CBC CAB 1S6 sing 26 n n CBC CAC 1S6 sing 27 n n CBB CAT 1S6 sing 28 n n CAT OAE 1S6 doub 29 n n CAT OAH 1S6 sing 30 n n C H1 1S6 sing 31 n n N H2 1S6 sing 32 n n CA H3 1S6 sing 33 n n CB H4 1S6 sing 34 n n CAA H5 1S6 sing 35 n n CAA H6 1S6 sing 36 n n CAA H7 1S6 sing 37 n n CAB H8 1S6 sing 38 n n CAB H9 1S6 sing 39 n n CAB H10 1S6 sing 40 n n CAC H11 1S6 sing 41 n n CAC H12 1S6 sing 42 n n CAC H13 1S6 sing 43 n n OAH H14 1S6 sing 44 n n CAI H15 1S6 sing 45 n n CAJ H16 1S6 sing 46 n n CAK H17 1S6 sing 47 n n CAL H18 1S6 sing 48 n n CAM H19 1S6 sing 49 n n NAP H20 1S6 sing 50 n n CBB H22 1S6 sing 51 n n # _atom_sites.entry_id 5OJ1 _atom_sites.fract_transf_matrix[1][1] 0.009917 _atom_sites.fract_transf_matrix[1][2] 0.005725 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1S6 A 1 801 1337 1S6 SOY . C 3 NA A 1 802 1 NA NA . D 4 HOH A 1 901 6 HOH HOH . D 4 HOH A 2 902 45 HOH HOH . D 4 HOH A 3 903 46 HOH HOH . D 4 HOH A 4 904 9 HOH HOH . D 4 HOH A 5 905 34 HOH HOH . D 4 HOH A 6 906 8 HOH HOH . D 4 HOH A 7 907 10 HOH HOH . D 4 HOH A 8 908 40 HOH HOH . D 4 HOH A 9 909 25 HOH HOH . D 4 HOH A 10 910 24 HOH HOH . D 4 HOH A 11 911 26 HOH HOH . D 4 HOH A 12 912 28 HOH HOH . D 4 HOH A 13 913 11 HOH HOH . D 4 HOH A 14 914 27 HOH HOH . D 4 HOH A 15 915 1 HOH HOH . D 4 HOH A 16 916 39 HOH HOH . D 4 HOH A 17 917 5 HOH HOH . D 4 HOH A 18 918 15 HOH HOH . D 4 HOH A 19 919 29 HOH HOH . D 4 HOH A 20 920 19 HOH HOH . D 4 HOH A 21 921 36 HOH HOH . D 4 HOH A 22 922 7 HOH HOH . D 4 HOH A 23 923 37 HOH HOH . D 4 HOH A 24 924 13 HOH HOH . D 4 HOH A 25 925 3 HOH HOH . D 4 HOH A 26 926 14 HOH HOH . D 4 HOH A 27 927 18 HOH HOH . D 4 HOH A 28 928 22 HOH HOH . D 4 HOH A 29 929 38 HOH HOH . D 4 HOH A 30 930 44 HOH HOH . D 4 HOH A 31 931 16 HOH HOH . D 4 HOH A 32 932 35 HOH HOH . D 4 HOH A 33 933 23 HOH HOH . D 4 HOH A 34 934 43 HOH HOH . D 4 HOH A 35 935 42 HOH HOH . D 4 HOH A 36 936 12 HOH HOH . D 4 HOH A 37 937 4 HOH HOH . D 4 HOH A 38 938 17 HOH HOH . D 4 HOH A 39 939 20 HOH HOH . D 4 HOH A 40 940 21 HOH HOH . D 4 HOH A 41 941 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 1S6 . . . B 2 37.09 -17.61 52.935 1 77.2 ? C 1S6 801 A 1 HETATM 2 N N 1S6 . . . B 2 34.921 -16.632 52.891 1 89.42 ? N 1S6 801 A 1 HETATM 3 C CA 1S6 . . . B 2 35.655 -17.803 53.362 1 90.7 ? CA 1S6 801 A 1 HETATM 4 C CB 1S6 . . . B 2 34.975 -19.104 52.808 1 105.21 ? CB 1S6 801 A 1 HETATM 5 C CAA 1S6 . . . B 2 35.488 -13.332 51.992 1 105.14 ? CAA 1S6 801 A 1 HETATM 6 C CAB 1S6 . . . B 2 34.065 -22.012 51.549 1 133.45 ? CAB 1S6 801 A 1 HETATM 7 C CAC 1S6 . . . B 2 34.088 -22.81 53.928 1 106.6 ? CAC 1S6 801 A 1 HETATM 8 O OAE 1S6 . . . B 2 31.116 -19.888 52.113 1 115.98 ? OAE 1S6 801 A 1 HETATM 9 O OAF 1S6 . . . B 2 33.658 -16.168 54.751 1 100.08 ? OAF 1S6 801 A 1 HETATM 10 O OAH 1S6 . . . B 2 31.133 -21.943 52.87 1 105.89 ? OAH 1S6 801 A 1 HETATM 11 C CAI 1S6 . . . B 2 28.63 -16.934 54.272 1 122.25 ? CAI 1S6 801 A 1 HETATM 12 C CAJ 1S6 . . . B 2 29.301 -17.357 53.121 1 118.06 ? CAJ 1S6 801 A 1 HETATM 13 C CAK 1S6 . . . B 2 29.012 -15.742 54.912 1 113.43 ? CAK 1S6 801 A 1 HETATM 14 C CAL 1S6 . . . B 2 30.356 -16.576 52.625 1 128.53 ? CAL 1S6 801 A 1 HETATM 15 C CAM 1S6 . . . B 2 30.063 -14.974 54.417 1 118.54 ? CAM 1S6 801 A 1 HETATM 16 N NAN 1S6 . . . B 2 31.799 -13.369 52.034 1 116.68 ? NAN 1S6 801 A 1 HETATM 17 N NAP 1S6 . . . B 2 33.552 -19.235 53.116 1 104.32 ? NAP 1S6 801 A 1 HETATM 18 O OAQ 1S6 . . . B 2 33.046 -12.908 51.747 1 113.65 ? OAQ 1S6 801 A 1 HETATM 19 S SAR 1S6 . . . B 2 35.668 -20.673 53.321 1 114.79 ? SAR 1S6 801 A 1 HETATM 20 C CAT 1S6 . . . B 2 31.674 -20.819 52.741 1 113.52 ? CAT 1S6 801 A 1 HETATM 21 C CAU 1S6 . . . B 2 34.005 -15.937 53.596 1 99.46 ? CAU 1S6 801 A 1 HETATM 22 C CAV 1S6 . . . B 2 34.052 -13.699 52.224 1 110.84 ? CAV 1S6 801 A 1 HETATM 23 C CAW 1S6 . . . B 2 30.748 -15.38 53.266 1 126.12 ? CAW 1S6 801 A 1 HETATM 24 C CAX 1S6 . . . B 2 31.885 -14.54 52.743 1 120.13 ? CAX 1S6 801 A 1 HETATM 25 C CAY 1S6 . . . B 2 33.352 -14.793 52.91 1 112.66 ? CAY 1S6 801 A 1 HETATM 26 C CBB 1S6 . . . B 2 33.027 -20.57 53.386 1 113.95 ? CBB 1S6 801 A 1 HETATM 27 C CBC 1S6 . . . B 2 34.148 -21.57 53.024 1 122.96 ? CBC 1S6 801 A 1 HETATM 28 O OXT 1S6 . . . B 2 38.076 -17.928 53.627 1 62.91 ? OXT 1S6 801 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #