data_5OJ9 # _model_server_result.job_id 1v4hywaZYmBCAN4haYYX5w _model_server_result.datetime_utc '2024-12-02 23:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5OJ9 # _exptl.entry_id 5OJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OJ9 _cell.length_a 39.712 _cell.length_b 47.786 _cell.length_c 77.484 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 93 A SER 92 1_555 A N MHS 94 A MHS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MHS 94 A MHS 93 1_555 A N ALA 95 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A NE2 MHS 94 A MHS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 5OJ9 _atom_sites.fract_transf_matrix[1][1] 0.025181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 HOH A 1 301 113 HOH HOH . C 3 HOH A 2 302 19 HOH HOH . C 3 HOH A 3 303 73 HOH HOH . C 3 HOH A 4 304 130 HOH HOH . C 3 HOH A 5 305 112 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 70 HOH HOH . C 3 HOH A 8 308 1 HOH HOH . C 3 HOH A 9 309 163 HOH HOH . C 3 HOH A 10 310 39 HOH HOH . C 3 HOH A 11 311 102 HOH HOH . C 3 HOH A 12 312 18 HOH HOH . C 3 HOH A 13 313 23 HOH HOH . C 3 HOH A 14 314 88 HOH HOH . C 3 HOH A 15 315 139 HOH HOH . C 3 HOH A 16 316 24 HOH HOH . C 3 HOH A 17 317 28 HOH HOH . C 3 HOH A 18 318 29 HOH HOH . C 3 HOH A 19 319 89 HOH HOH . C 3 HOH A 20 320 33 HOH HOH . C 3 HOH A 21 321 145 HOH HOH . C 3 HOH A 22 322 9 HOH HOH . C 3 HOH A 23 323 82 HOH HOH . C 3 HOH A 24 324 117 HOH HOH . C 3 HOH A 25 325 56 HOH HOH . C 3 HOH A 26 326 76 HOH HOH . C 3 HOH A 27 327 20 HOH HOH . C 3 HOH A 28 328 146 HOH HOH . C 3 HOH A 29 329 5 HOH HOH . C 3 HOH A 30 330 92 HOH HOH . C 3 HOH A 31 331 87 HOH HOH . C 3 HOH A 32 332 125 HOH HOH . C 3 HOH A 33 333 45 HOH HOH . C 3 HOH A 34 334 3 HOH HOH . C 3 HOH A 35 335 34 HOH HOH . C 3 HOH A 36 336 35 HOH HOH . C 3 HOH A 37 337 11 HOH HOH . C 3 HOH A 38 338 100 HOH HOH . C 3 HOH A 39 339 103 HOH HOH . C 3 HOH A 40 340 107 HOH HOH . C 3 HOH A 41 341 158 HOH HOH . C 3 HOH A 42 342 108 HOH HOH . C 3 HOH A 43 343 27 HOH HOH . C 3 HOH A 44 344 127 HOH HOH . C 3 HOH A 45 345 60 HOH HOH . C 3 HOH A 46 346 49 HOH HOH . C 3 HOH A 47 347 25 HOH HOH . C 3 HOH A 48 348 62 HOH HOH . C 3 HOH A 49 349 12 HOH HOH . C 3 HOH A 50 350 30 HOH HOH . C 3 HOH A 51 351 85 HOH HOH . C 3 HOH A 52 352 48 HOH HOH . C 3 HOH A 53 353 77 HOH HOH . C 3 HOH A 54 354 74 HOH HOH . C 3 HOH A 55 355 4 HOH HOH . C 3 HOH A 56 356 21 HOH HOH . C 3 HOH A 57 357 53 HOH HOH . C 3 HOH A 58 358 91 HOH HOH . C 3 HOH A 59 359 147 HOH HOH . C 3 HOH A 60 360 109 HOH HOH . C 3 HOH A 61 361 78 HOH HOH . C 3 HOH A 62 362 26 HOH HOH . C 3 HOH A 63 363 65 HOH HOH . C 3 HOH A 64 364 47 HOH HOH . C 3 HOH A 65 365 54 HOH HOH . C 3 HOH A 66 366 68 HOH HOH . C 3 HOH A 67 367 17 HOH HOH . C 3 HOH A 68 368 120 HOH HOH . C 3 HOH A 69 369 51 HOH HOH . C 3 HOH A 70 370 50 HOH HOH . C 3 HOH A 71 371 43 HOH HOH . C 3 HOH A 72 372 41 HOH HOH . C 3 HOH A 73 373 105 HOH HOH . C 3 HOH A 74 374 61 HOH HOH . C 3 HOH A 75 375 15 HOH HOH . C 3 HOH A 76 376 16 HOH HOH . C 3 HOH A 77 377 106 HOH HOH . C 3 HOH A 78 378 38 HOH HOH . C 3 HOH A 79 379 64 HOH HOH . C 3 HOH A 80 380 96 HOH HOH . C 3 HOH A 81 381 6 HOH HOH . C 3 HOH A 82 382 152 HOH HOH . C 3 HOH A 83 383 32 HOH HOH . C 3 HOH A 84 384 52 HOH HOH . C 3 HOH A 85 385 59 HOH HOH . C 3 HOH A 86 386 13 HOH HOH . C 3 HOH A 87 387 83 HOH HOH . C 3 HOH A 88 388 58 HOH HOH . C 3 HOH A 89 389 86 HOH HOH . C 3 HOH A 90 390 138 HOH HOH . C 3 HOH A 91 391 22 HOH HOH . C 3 HOH A 92 392 44 HOH HOH . C 3 HOH A 93 393 31 HOH HOH . C 3 HOH A 94 394 80 HOH HOH . C 3 HOH A 95 395 75 HOH HOH . C 3 HOH A 96 396 42 HOH HOH . C 3 HOH A 97 397 72 HOH HOH . C 3 HOH A 98 398 121 HOH HOH . C 3 HOH A 99 399 122 HOH HOH . C 3 HOH A 100 400 101 HOH HOH . C 3 HOH A 101 401 135 HOH HOH . C 3 HOH A 102 402 131 HOH HOH . C 3 HOH A 103 403 95 HOH HOH . C 3 HOH A 104 404 40 HOH HOH . C 3 HOH A 105 405 79 HOH HOH . C 3 HOH A 106 406 154 HOH HOH . C 3 HOH A 107 407 162 HOH HOH . C 3 HOH A 108 408 148 HOH HOH . C 3 HOH A 109 409 133 HOH HOH . C 3 HOH A 110 410 137 HOH HOH . C 3 HOH A 111 411 156 HOH HOH . C 3 HOH A 112 412 99 HOH HOH . C 3 HOH A 113 413 143 HOH HOH . C 3 HOH A 114 414 160 HOH HOH . C 3 HOH A 115 415 136 HOH HOH . C 3 HOH A 116 416 111 HOH HOH . C 3 HOH A 117 417 97 HOH HOH . C 3 HOH A 118 418 141 HOH HOH . C 3 HOH A 119 419 81 HOH HOH . C 3 HOH A 120 420 129 HOH HOH . C 3 HOH A 121 421 155 HOH HOH . C 3 HOH A 122 422 153 HOH HOH . C 3 HOH A 123 423 161 HOH HOH . C 3 HOH A 124 424 140 HOH HOH . C 3 HOH A 125 425 134 HOH HOH . C 3 HOH A 126 426 159 HOH HOH . C 3 HOH A 127 427 157 HOH HOH . C 3 HOH A 128 428 119 HOH HOH . C 3 HOH A 129 429 149 HOH HOH . C 3 HOH A 130 430 126 HOH HOH . C 3 HOH A 131 431 55 HOH HOH . C 3 HOH A 132 432 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -6.5 8.661 -9.052 1 20.74 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 -4.609 6.522 -5.146 1 12.6 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 -4.479 2.345 -7.556 1 13.08 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -6.243 4.479 -11.534 1 17.67 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 -5.982 8.459 -7.792 1 18.36 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 -5.848 9.461 -6.747 1 19.55 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 -5.331 8.854 -5.683 1 16.23 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 -5.113 7.46 -6.009 1 15.51 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 -5.007 9.478 -4.314 1 16.78 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 -6.237 10.961 -6.84 1 22.54 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 -7.653 11.163 -6.302 1 25.05 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 -8.031 12.63 -6.287 1 34.23 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 -7.237 13.477 -5.793 1 37.25 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 -9.151 12.958 -6.76 1 40.29 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 -4.458 5.189 -5.434 1 12.19 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 -4.005 4.173 -4.521 1 12.33 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 -3.972 3.009 -5.183 1 14.73 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 -4.381 3.276 -6.55 1 14.4 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 -3.668 4.438 -3.041 1 14.34 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 -3.555 1.61 -4.677 1 15.4 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 -2.576 1.402 -3.777 1 16.27 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -4.886 2.568 -8.86 1 13.78 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -4.804 1.6 -9.94 1 15.49 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -5.285 2.209 -11.043 1 14.32 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -5.675 3.55 -10.685 1 16.55 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -4.252 0.159 -9.771 1 15.2 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -5.451 1.708 -12.493 1 15 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -5.087 0.51 -12.939 1 15.28 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -6.451 5.798 -11.209 1 17.64 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -6.871 6.844 -12.113 1 22.92 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -6.939 7.982 -11.426 1 24.4 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -6.567 7.716 -10.058 1 19.75 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -7.178 6.658 -13.609 1 26.38 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -7.327 9.368 -11.981 1 30.04 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -5.998 10.11 -12.142 1 30.04 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -6.092 11.181 -13.195 1 42.16 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -7.133 11.884 -13.248 1 46.82 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -5.113 11.335 -13.972 1 46.35 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 -5.526 7.24 -7.31 1 16.13 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 -4.678 4.616 -6.667 1 14.13 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -5.416 3.744 -9.348 1 16.12 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -6.266 6.366 -9.959 1 19.35 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 -5.561 5.457 -8.297 1 15.41 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #