data_5OJA # _model_server_result.job_id dzsxqWMjw_JHtNQNN_NP1Q _model_server_result.datetime_utc '2024-12-03 16:04:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5OJA # _exptl.entry_id 5OJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.06 _cell.angle_gamma 90 _cell.entry_id 5OJA _cell.length_a 34.13 _cell.length_b 51.9 _cell.length_c 39.35 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 B N1 IMD . A IMD 201 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 242 n y N1 C5 IMD sing 243 n y N1 HN1 IMD sing 244 n n C2 N3 IMD doub 245 n y C2 H2 IMD sing 246 n n N3 C4 IMD sing 247 n y N3 HN3 IMD sing 248 n n C4 C5 IMD doub 249 n y C4 H4 IMD sing 250 n n C5 H5 IMD sing 251 n n # _atom_sites.entry_id 5OJA _atom_sites.fract_transf_matrix[1][1] 0.0293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 201 1 IMD IMD . C 3 HEM A 1 202 1 HEM HEM . D 4 HOH A 1 301 44 HOH HOH . D 4 HOH A 2 302 83 HOH HOH . D 4 HOH A 3 303 92 HOH HOH . D 4 HOH A 4 304 42 HOH HOH . D 4 HOH A 5 305 98 HOH HOH . D 4 HOH A 6 306 68 HOH HOH . D 4 HOH A 7 307 132 HOH HOH . D 4 HOH A 8 308 157 HOH HOH . D 4 HOH A 9 309 48 HOH HOH . D 4 HOH A 10 310 86 HOH HOH . D 4 HOH A 11 311 65 HOH HOH . D 4 HOH A 12 312 107 HOH HOH . D 4 HOH A 13 313 89 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 91 HOH HOH . D 4 HOH A 16 316 118 HOH HOH . D 4 HOH A 17 317 75 HOH HOH . D 4 HOH A 18 318 78 HOH HOH . D 4 HOH A 19 319 2 HOH HOH . D 4 HOH A 20 320 9 HOH HOH . D 4 HOH A 21 321 112 HOH HOH . D 4 HOH A 22 322 88 HOH HOH . D 4 HOH A 23 323 58 HOH HOH . D 4 HOH A 24 324 6 HOH HOH . D 4 HOH A 25 325 74 HOH HOH . D 4 HOH A 26 326 63 HOH HOH . D 4 HOH A 27 327 1 HOH HOH . D 4 HOH A 28 328 11 HOH HOH . D 4 HOH A 29 329 67 HOH HOH . D 4 HOH A 30 330 79 HOH HOH . D 4 HOH A 31 331 70 HOH HOH . D 4 HOH A 32 332 57 HOH HOH . D 4 HOH A 33 333 153 HOH HOH . D 4 HOH A 34 334 103 HOH HOH . D 4 HOH A 35 335 30 HOH HOH . D 4 HOH A 36 336 134 HOH HOH . D 4 HOH A 37 337 51 HOH HOH . D 4 HOH A 38 338 4 HOH HOH . D 4 HOH A 39 339 106 HOH HOH . D 4 HOH A 40 340 72 HOH HOH . D 4 HOH A 41 341 31 HOH HOH . D 4 HOH A 42 342 27 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 36 HOH HOH . D 4 HOH A 45 345 17 HOH HOH . D 4 HOH A 46 346 81 HOH HOH . D 4 HOH A 47 347 55 HOH HOH . D 4 HOH A 48 348 3 HOH HOH . D 4 HOH A 49 349 64 HOH HOH . D 4 HOH A 50 350 26 HOH HOH . D 4 HOH A 51 351 25 HOH HOH . D 4 HOH A 52 352 71 HOH HOH . D 4 HOH A 53 353 143 HOH HOH . D 4 HOH A 54 354 33 HOH HOH . D 4 HOH A 55 355 10 HOH HOH . D 4 HOH A 56 356 113 HOH HOH . D 4 HOH A 57 357 146 HOH HOH . D 4 HOH A 58 358 5 HOH HOH . D 4 HOH A 59 359 105 HOH HOH . D 4 HOH A 60 360 150 HOH HOH . D 4 HOH A 61 361 126 HOH HOH . D 4 HOH A 62 362 87 HOH HOH . D 4 HOH A 63 363 23 HOH HOH . D 4 HOH A 64 364 15 HOH HOH . D 4 HOH A 65 365 39 HOH HOH . D 4 HOH A 66 366 45 HOH HOH . D 4 HOH A 67 367 32 HOH HOH . D 4 HOH A 68 368 116 HOH HOH . D 4 HOH A 69 369 94 HOH HOH . D 4 HOH A 70 370 28 HOH HOH . D 4 HOH A 71 371 38 HOH HOH . D 4 HOH A 72 372 145 HOH HOH . D 4 HOH A 73 373 7 HOH HOH . D 4 HOH A 74 374 40 HOH HOH . D 4 HOH A 75 375 61 HOH HOH . D 4 HOH A 76 376 13 HOH HOH . D 4 HOH A 77 377 21 HOH HOH . D 4 HOH A 78 378 35 HOH HOH . D 4 HOH A 79 379 19 HOH HOH . D 4 HOH A 80 380 20 HOH HOH . D 4 HOH A 81 381 54 HOH HOH . D 4 HOH A 82 382 117 HOH HOH . D 4 HOH A 83 383 56 HOH HOH . D 4 HOH A 84 384 52 HOH HOH . D 4 HOH A 85 385 135 HOH HOH . D 4 HOH A 86 386 47 HOH HOH . D 4 HOH A 87 387 12 HOH HOH . D 4 HOH A 88 388 95 HOH HOH . D 4 HOH A 89 389 93 HOH HOH . D 4 HOH A 90 390 8 HOH HOH . D 4 HOH A 91 391 76 HOH HOH . D 4 HOH A 92 392 41 HOH HOH . D 4 HOH A 93 393 125 HOH HOH . D 4 HOH A 94 394 29 HOH HOH . D 4 HOH A 95 395 80 HOH HOH . D 4 HOH A 96 396 99 HOH HOH . D 4 HOH A 97 397 124 HOH HOH . D 4 HOH A 98 398 24 HOH HOH . D 4 HOH A 99 399 102 HOH HOH . D 4 HOH A 100 400 84 HOH HOH . D 4 HOH A 101 401 162 HOH HOH . D 4 HOH A 102 402 121 HOH HOH . D 4 HOH A 103 403 110 HOH HOH . D 4 HOH A 104 404 34 HOH HOH . D 4 HOH A 105 405 90 HOH HOH . D 4 HOH A 106 406 50 HOH HOH . D 4 HOH A 107 407 114 HOH HOH . D 4 HOH A 108 408 82 HOH HOH . D 4 HOH A 109 409 62 HOH HOH . D 4 HOH A 110 410 147 HOH HOH . D 4 HOH A 111 411 60 HOH HOH . D 4 HOH A 112 412 130 HOH HOH . D 4 HOH A 113 413 127 HOH HOH . D 4 HOH A 114 414 109 HOH HOH . D 4 HOH A 115 415 141 HOH HOH . D 4 HOH A 116 416 120 HOH HOH . D 4 HOH A 117 417 46 HOH HOH . D 4 HOH A 118 418 163 HOH HOH . D 4 HOH A 119 419 138 HOH HOH . D 4 HOH A 120 420 164 HOH HOH . D 4 HOH A 121 421 142 HOH HOH . D 4 HOH A 122 422 136 HOH HOH . D 4 HOH A 123 423 69 HOH HOH . D 4 HOH A 124 424 139 HOH HOH . D 4 HOH A 125 425 96 HOH HOH . D 4 HOH A 126 426 115 HOH HOH . D 4 HOH A 127 427 133 HOH HOH . D 4 HOH A 128 428 122 HOH HOH . D 4 HOH A 129 429 156 HOH HOH . D 4 HOH A 130 430 73 HOH HOH . D 4 HOH A 131 431 22 HOH HOH . D 4 HOH A 132 432 148 HOH HOH . D 4 HOH A 133 433 159 HOH HOH . D 4 HOH A 134 434 144 HOH HOH . D 4 HOH A 135 435 104 HOH HOH . D 4 HOH A 136 436 154 HOH HOH . D 4 HOH A 137 437 119 HOH HOH . D 4 HOH A 138 438 18 HOH HOH . D 4 HOH A 139 439 131 HOH HOH . D 4 HOH A 140 440 49 HOH HOH . D 4 HOH A 141 441 160 HOH HOH . D 4 HOH A 142 442 53 HOH HOH . D 4 HOH A 143 443 66 HOH HOH . D 4 HOH A 144 444 137 HOH HOH . D 4 HOH A 145 445 77 HOH HOH . D 4 HOH A 146 446 140 HOH HOH . D 4 HOH A 147 447 152 HOH HOH . D 4 HOH A 148 448 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . B 2 2.915 6.392 14.92 1 18.41 ? N1 IMD 201 A 1 HETATM 2 C C2 IMD . . . B 2 3.419 7.516 14.39 1 18.22 ? C2 IMD 201 A 1 HETATM 3 N N3 IMD . . . B 2 3.133 7.484 13.086 1 17.38 ? N3 IMD 201 A 1 HETATM 4 C C4 IMD . . . B 2 2.483 6.346 12.804 1 17.78 ? C4 IMD 201 A 1 HETATM 5 C C5 IMD . . . B 2 2.324 5.633 13.976 1 17.67 ? C5 IMD 201 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 57 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 478 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #