data_5OJA # _model_server_result.job_id '_Wli_PmmbMDf7J8dBfFo6A' _model_server_result.datetime_utc '2024-12-02 23:46:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5OJA # _exptl.entry_id 5OJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.06 _cell.angle_gamma 90 _cell.entry_id 5OJA _cell.length_a 34.13 _cell.length_b 51.9 _cell.length_c 39.35 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 B N1 IMD . A IMD 201 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 5OJA _atom_sites.fract_transf_matrix[1][1] 0.0293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 201 1 IMD IMD . C 3 HEM A 1 202 1 HEM HEM . D 4 HOH A 1 301 44 HOH HOH . D 4 HOH A 2 302 83 HOH HOH . D 4 HOH A 3 303 92 HOH HOH . D 4 HOH A 4 304 42 HOH HOH . D 4 HOH A 5 305 98 HOH HOH . D 4 HOH A 6 306 68 HOH HOH . D 4 HOH A 7 307 132 HOH HOH . D 4 HOH A 8 308 157 HOH HOH . D 4 HOH A 9 309 48 HOH HOH . D 4 HOH A 10 310 86 HOH HOH . D 4 HOH A 11 311 65 HOH HOH . D 4 HOH A 12 312 107 HOH HOH . D 4 HOH A 13 313 89 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 91 HOH HOH . D 4 HOH A 16 316 118 HOH HOH . D 4 HOH A 17 317 75 HOH HOH . D 4 HOH A 18 318 78 HOH HOH . D 4 HOH A 19 319 2 HOH HOH . D 4 HOH A 20 320 9 HOH HOH . D 4 HOH A 21 321 112 HOH HOH . D 4 HOH A 22 322 88 HOH HOH . D 4 HOH A 23 323 58 HOH HOH . D 4 HOH A 24 324 6 HOH HOH . D 4 HOH A 25 325 74 HOH HOH . D 4 HOH A 26 326 63 HOH HOH . D 4 HOH A 27 327 1 HOH HOH . D 4 HOH A 28 328 11 HOH HOH . D 4 HOH A 29 329 67 HOH HOH . D 4 HOH A 30 330 79 HOH HOH . D 4 HOH A 31 331 70 HOH HOH . D 4 HOH A 32 332 57 HOH HOH . D 4 HOH A 33 333 153 HOH HOH . D 4 HOH A 34 334 103 HOH HOH . D 4 HOH A 35 335 30 HOH HOH . D 4 HOH A 36 336 134 HOH HOH . D 4 HOH A 37 337 51 HOH HOH . D 4 HOH A 38 338 4 HOH HOH . D 4 HOH A 39 339 106 HOH HOH . D 4 HOH A 40 340 72 HOH HOH . D 4 HOH A 41 341 31 HOH HOH . D 4 HOH A 42 342 27 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 36 HOH HOH . D 4 HOH A 45 345 17 HOH HOH . D 4 HOH A 46 346 81 HOH HOH . D 4 HOH A 47 347 55 HOH HOH . D 4 HOH A 48 348 3 HOH HOH . D 4 HOH A 49 349 64 HOH HOH . D 4 HOH A 50 350 26 HOH HOH . D 4 HOH A 51 351 25 HOH HOH . D 4 HOH A 52 352 71 HOH HOH . D 4 HOH A 53 353 143 HOH HOH . D 4 HOH A 54 354 33 HOH HOH . D 4 HOH A 55 355 10 HOH HOH . D 4 HOH A 56 356 113 HOH HOH . D 4 HOH A 57 357 146 HOH HOH . D 4 HOH A 58 358 5 HOH HOH . D 4 HOH A 59 359 105 HOH HOH . D 4 HOH A 60 360 150 HOH HOH . D 4 HOH A 61 361 126 HOH HOH . D 4 HOH A 62 362 87 HOH HOH . D 4 HOH A 63 363 23 HOH HOH . D 4 HOH A 64 364 15 HOH HOH . D 4 HOH A 65 365 39 HOH HOH . D 4 HOH A 66 366 45 HOH HOH . D 4 HOH A 67 367 32 HOH HOH . D 4 HOH A 68 368 116 HOH HOH . D 4 HOH A 69 369 94 HOH HOH . D 4 HOH A 70 370 28 HOH HOH . D 4 HOH A 71 371 38 HOH HOH . D 4 HOH A 72 372 145 HOH HOH . D 4 HOH A 73 373 7 HOH HOH . D 4 HOH A 74 374 40 HOH HOH . D 4 HOH A 75 375 61 HOH HOH . D 4 HOH A 76 376 13 HOH HOH . D 4 HOH A 77 377 21 HOH HOH . D 4 HOH A 78 378 35 HOH HOH . D 4 HOH A 79 379 19 HOH HOH . D 4 HOH A 80 380 20 HOH HOH . D 4 HOH A 81 381 54 HOH HOH . D 4 HOH A 82 382 117 HOH HOH . D 4 HOH A 83 383 56 HOH HOH . D 4 HOH A 84 384 52 HOH HOH . D 4 HOH A 85 385 135 HOH HOH . D 4 HOH A 86 386 47 HOH HOH . D 4 HOH A 87 387 12 HOH HOH . D 4 HOH A 88 388 95 HOH HOH . D 4 HOH A 89 389 93 HOH HOH . D 4 HOH A 90 390 8 HOH HOH . D 4 HOH A 91 391 76 HOH HOH . D 4 HOH A 92 392 41 HOH HOH . D 4 HOH A 93 393 125 HOH HOH . D 4 HOH A 94 394 29 HOH HOH . D 4 HOH A 95 395 80 HOH HOH . D 4 HOH A 96 396 99 HOH HOH . D 4 HOH A 97 397 124 HOH HOH . D 4 HOH A 98 398 24 HOH HOH . D 4 HOH A 99 399 102 HOH HOH . D 4 HOH A 100 400 84 HOH HOH . D 4 HOH A 101 401 162 HOH HOH . D 4 HOH A 102 402 121 HOH HOH . D 4 HOH A 103 403 110 HOH HOH . D 4 HOH A 104 404 34 HOH HOH . D 4 HOH A 105 405 90 HOH HOH . D 4 HOH A 106 406 50 HOH HOH . D 4 HOH A 107 407 114 HOH HOH . D 4 HOH A 108 408 82 HOH HOH . D 4 HOH A 109 409 62 HOH HOH . D 4 HOH A 110 410 147 HOH HOH . D 4 HOH A 111 411 60 HOH HOH . D 4 HOH A 112 412 130 HOH HOH . D 4 HOH A 113 413 127 HOH HOH . D 4 HOH A 114 414 109 HOH HOH . D 4 HOH A 115 415 141 HOH HOH . D 4 HOH A 116 416 120 HOH HOH . D 4 HOH A 117 417 46 HOH HOH . D 4 HOH A 118 418 163 HOH HOH . D 4 HOH A 119 419 138 HOH HOH . D 4 HOH A 120 420 164 HOH HOH . D 4 HOH A 121 421 142 HOH HOH . D 4 HOH A 122 422 136 HOH HOH . D 4 HOH A 123 423 69 HOH HOH . D 4 HOH A 124 424 139 HOH HOH . D 4 HOH A 125 425 96 HOH HOH . D 4 HOH A 126 426 115 HOH HOH . D 4 HOH A 127 427 133 HOH HOH . D 4 HOH A 128 428 122 HOH HOH . D 4 HOH A 129 429 156 HOH HOH . D 4 HOH A 130 430 73 HOH HOH . D 4 HOH A 131 431 22 HOH HOH . D 4 HOH A 132 432 148 HOH HOH . D 4 HOH A 133 433 159 HOH HOH . D 4 HOH A 134 434 144 HOH HOH . D 4 HOH A 135 435 104 HOH HOH . D 4 HOH A 136 436 154 HOH HOH . D 4 HOH A 137 437 119 HOH HOH . D 4 HOH A 138 438 18 HOH HOH . D 4 HOH A 139 439 131 HOH HOH . D 4 HOH A 140 440 49 HOH HOH . D 4 HOH A 141 441 160 HOH HOH . D 4 HOH A 142 442 53 HOH HOH . D 4 HOH A 143 443 66 HOH HOH . D 4 HOH A 144 444 137 HOH HOH . D 4 HOH A 145 445 77 HOH HOH . D 4 HOH A 146 446 140 HOH HOH . D 4 HOH A 147 447 152 HOH HOH . D 4 HOH A 148 448 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 2.858 9.377 17.545 1 17.32 ? CHA HEM 202 A 1 HETATM 2 C CHB HEM . . . C 3 -0.497 5.941 16.938 1 17.06 ? CHB HEM 202 A 1 HETATM 3 C CHC HEM . . . C 3 3.002 2.624 16.432 1 16.93 ? CHC HEM 202 A 1 HETATM 4 C CHD HEM . . . C 3 6.36 6.071 17.052 1 16.03 ? CHD HEM 202 A 1 HETATM 5 C C1A HEM . . . C 3 1.65 8.728 17.42 1 18.62 ? C1A HEM 202 A 1 HETATM 6 C C2A HEM . . . C 3 0.346 9.363 17.471 1 19.88 ? C2A HEM 202 A 1 HETATM 7 C C3A HEM . . . C 3 -0.578 8.413 17.31 1 19.2 ? C3A HEM 202 A 1 HETATM 8 C C4A HEM . . . C 3 0.101 7.152 17.136 1 17.39 ? C4A HEM 202 A 1 HETATM 9 C CMA HEM . . . C 3 -2.107 8.624 17.285 1 21.8 ? CMA HEM 202 A 1 HETATM 10 C CAA HEM . . . C 3 0.098 10.874 17.674 1 22.17 ? CAA HEM 202 A 1 HETATM 11 C CBA HEM . . . C 3 0.054 11.536 16.301 1 25.53 ? CBA HEM 202 A 1 HETATM 12 C CGA HEM . . . C 3 -0.22 13.016 16.405 1 31.65 ? CGA HEM 202 A 1 HETATM 13 O O1A HEM . . . C 3 -1.387 13.393 16.683 1 35.15 ? O1A HEM 202 A 1 HETATM 14 O O2A HEM . . . C 3 0.729 13.816 16.195 1 32.95 ? O2A HEM 202 A 1 HETATM 15 C C1B HEM . . . C 3 0.164 4.78 16.666 1 17.13 ? C1B HEM 202 A 1 HETATM 16 C C2B HEM . . . C 3 -0.463 3.558 16.228 1 16.51 ? C2B HEM 202 A 1 HETATM 17 C C3B HEM . . . C 3 0.499 2.628 16.088 1 16.34 ? C3B HEM 202 A 1 HETATM 18 C C4B HEM . . . C 3 1.764 3.247 16.434 1 18.14 ? C4B HEM 202 A 1 HETATM 19 C CMB HEM . . . C 3 -1.987 3.431 15.975 1 21.36 ? CMB HEM 202 A 1 HETATM 20 C CAB HEM . . . C 3 0.406 1.155 15.627 1 20.48 ? CAB HEM 202 A 1 HETATM 21 C CBB HEM . . . C 3 -0.679 0.592 15.072 1 22.37 ? CBB HEM 202 A 1 HETATM 22 C C1C HEM . . . C 3 4.209 3.278 16.599 1 16.16 ? C1C HEM 202 A 1 HETATM 23 C C2C HEM . . . C 3 5.5 2.634 16.609 1 17 ? C2C HEM 202 A 1 HETATM 24 C C3C HEM . . . C 3 6.436 3.588 16.774 1 18.08 ? C3C HEM 202 A 1 HETATM 25 C C4C HEM . . . C 3 5.755 4.857 16.893 1 17.57 ? C4C HEM 202 A 1 HETATM 26 C CMC HEM . . . C 3 5.682 1.112 16.421 1 23 ? CMC HEM 202 A 1 HETATM 27 C CAC HEM . . . C 3 7.975 3.473 16.865 1 19.11 ? CAC HEM 202 A 1 HETATM 28 C CBC HEM . . . C 3 8.683 2.339 16.843 1 23.25 ? CBC HEM 202 A 1 HETATM 29 C C1D HEM . . . C 3 5.699 7.247 17.232 1 17.81 ? C1D HEM 202 A 1 HETATM 30 C C2D HEM . . . C 3 6.325 8.52 17.466 1 17.37 ? C2D HEM 202 A 1 HETATM 31 C C3D HEM . . . C 3 5.374 9.434 17.611 1 19.49 ? C3D HEM 202 A 1 HETATM 32 C C4D HEM . . . C 3 4.095 8.768 17.469 1 16.03 ? C4D HEM 202 A 1 HETATM 33 C CMD HEM . . . C 3 7.843 8.749 17.531 1 19.81 ? CMD HEM 202 A 1 HETATM 34 C CAD HEM . . . C 3 5.578 10.935 17.907 1 20.93 ? CAD HEM 202 A 1 HETATM 35 C CBD HEM . . . C 3 5.973 11.058 19.395 1 21.48 ? CBD HEM 202 A 1 HETATM 36 C CGD HEM . . . C 3 5.149 10.204 20.36 1 23.52 ? CGD HEM 202 A 1 HETATM 37 O O1D HEM . . . C 3 3.956 10.538 20.49 1 21.31 ? O1D HEM 202 A 1 HETATM 38 O O2D HEM . . . C 3 5.662 9.258 21.035 1 27.82 ? O2D HEM 202 A 1 HETATM 39 N NA HEM . . . C 3 1.461 7.374 17.215 1 17.14 ? NA HEM 202 A 1 HETATM 40 N NB HEM . . . C 3 1.51 4.56 16.781 1 16.74 ? NB HEM 202 A 1 HETATM 41 N NC HEM . . . C 3 4.404 4.637 16.786 1 15.47 ? NC HEM 202 A 1 HETATM 42 N ND HEM . . . C 3 4.338 7.432 17.23 1 16.11 ? ND HEM 202 A 1 HETATM 43 FE FE HEM . . . C 3 2.933 5.998 17.03 1 16.51 ? FE HEM 202 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #