data_5OJB
#
_model_server_result.job_id            serbjvOG-45XisVGtsEy5Q 
_model_server_result.datetime_utc      '2024-12-02 23:56:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ojb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5OJB 
#
_exptl.entry_id    5OJB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OJB 
_cell.length_a            91.134 
_cell.length_b            91.134 
_cell.length_c            39.687 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OJB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 93 A SER 92 1_555 A N MHS 94 A MHS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MHS 94 A MHS 93 1_555 A N ALA 95 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
metalc ? metalc1 A NE2 MHS 94 A MHS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N3 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     5OJB 
_atom_sites.fract_transf_matrix[1][1]    0.010973 
_atom_sites.fract_transf_matrix[1][2]    0.006335 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01267 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 201 HEM HEM . 
C 3 IMD A 1 202 1 IMD IMD . 
D 4 HOH A 1 301 76 HOH HOH . 
D 4 HOH A 2 302 11 HOH HOH . 
D 4 HOH A 3 303 61 HOH HOH . 
D 4 HOH A 4 304 36 HOH HOH . 
D 4 HOH A 5 305 22 HOH HOH . 
D 4 HOH A 6 306 48 HOH HOH . 
D 4 HOH A 7 307 23 HOH HOH . 
D 4 HOH A 8 308 90 HOH HOH . 
D 4 HOH A 9 309 44 HOH HOH . 
D 4 HOH A 10 310 24 HOH HOH . 
D 4 HOH A 11 311 45 HOH HOH . 
D 4 HOH A 12 312 21 HOH HOH . 
D 4 HOH A 13 313 92 HOH HOH . 
D 4 HOH A 14 314 47 HOH HOH . 
D 4 HOH A 15 315 19 HOH HOH . 
D 4 HOH A 16 316 33 HOH HOH . 
D 4 HOH A 17 317 7 HOH HOH . 
D 4 HOH A 18 318 64 HOH HOH . 
D 4 HOH A 19 319 35 HOH HOH . 
D 4 HOH A 20 320 5 HOH HOH . 
D 4 HOH A 21 321 68 HOH HOH . 
D 4 HOH A 22 322 1 HOH HOH . 
D 4 HOH A 23 323 20 HOH HOH . 
D 4 HOH A 24 324 2 HOH HOH . 
D 4 HOH A 25 325 79 HOH HOH . 
D 4 HOH A 26 326 29 HOH HOH . 
D 4 HOH A 27 327 15 HOH HOH . 
D 4 HOH A 28 328 59 HOH HOH . 
D 4 HOH A 29 329 8 HOH HOH . 
D 4 HOH A 30 330 16 HOH HOH . 
D 4 HOH A 31 331 12 HOH HOH . 
D 4 HOH A 32 332 14 HOH HOH . 
D 4 HOH A 33 333 13 HOH HOH . 
D 4 HOH A 34 334 42 HOH HOH . 
D 4 HOH A 35 335 39 HOH HOH . 
D 4 HOH A 36 336 60 HOH HOH . 
D 4 HOH A 37 337 26 HOH HOH . 
D 4 HOH A 38 338 6 HOH HOH . 
D 4 HOH A 39 339 40 HOH HOH . 
D 4 HOH A 40 340 25 HOH HOH . 
D 4 HOH A 41 341 17 HOH HOH . 
D 4 HOH A 42 342 3 HOH HOH . 
D 4 HOH A 43 343 80 HOH HOH . 
D 4 HOH A 44 344 65 HOH HOH . 
D 4 HOH A 45 345 89 HOH HOH . 
D 4 HOH A 46 346 75 HOH HOH . 
D 4 HOH A 47 347 30 HOH HOH . 
D 4 HOH A 48 348 82 HOH HOH . 
D 4 HOH A 49 349 51 HOH HOH . 
D 4 HOH A 50 350 71 HOH HOH . 
D 4 HOH A 51 351 41 HOH HOH . 
D 4 HOH A 52 352 53 HOH HOH . 
D 4 HOH A 53 353 34 HOH HOH . 
D 4 HOH A 54 354 77 HOH HOH . 
D 4 HOH A 55 355 31 HOH HOH . 
D 4 HOH A 56 356 9 HOH HOH . 
D 4 HOH A 57 357 32 HOH HOH . 
D 4 HOH A 58 358 58 HOH HOH . 
D 4 HOH A 59 359 18 HOH HOH . 
D 4 HOH A 60 360 50 HOH HOH . 
D 4 HOH A 61 361 27 HOH HOH . 
D 4 HOH A 62 362 10 HOH HOH . 
D 4 HOH A 63 363 43 HOH HOH . 
D 4 HOH A 64 364 55 HOH HOH . 
D 4 HOH A 65 365 72 HOH HOH . 
D 4 HOH A 66 366 52 HOH HOH . 
D 4 HOH A 67 367 86 HOH HOH . 
D 4 HOH A 68 368 74 HOH HOH . 
D 4 HOH A 69 369 37 HOH HOH . 
D 4 HOH A 70 370 62 HOH HOH . 
D 4 HOH A 71 371 81 HOH HOH . 
D 4 HOH A 72 372 56 HOH HOH . 
D 4 HOH A 73 373 63 HOH HOH . 
D 4 HOH A 74 374 88 HOH HOH . 
D 4 HOH A 75 375 38 HOH HOH . 
D 4 HOH A 76 376 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -4 38.927 5.724 1 39.86 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . B 2 -3.789 34.194 4.773 1 31 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . B 2 0.689 34.726 3.088 1 25.89 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . B 2 0.283 39.503 3.545 1 25.77 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . B 2 -4.356 37.603 5.61 1 35.82 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . B 2 -5.638 37.011 5.957 1 44.33 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . B 2 -5.558 35.694 5.69 1 45.91 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . B 2 -4.234 35.428 5.165 1 31.64 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . B 2 -6.621 34.581 5.876 1 52.7 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . B 2 -6.834 37.809 6.537 1 55.23 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . B 2 -8.112 37.531 5.746 1 62.73 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . B 2 -8.757 38.795 5.251 1 69.45 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . B 2 -9.193 39.626 6.092 1 71.62 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . B 2 -8.846 38.957 4.007 1 61.52 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . B 2 -2.559 33.918 4.241 1 26.77 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . B 2 -2.088 32.612 3.849 1 27.46 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . B 2 -0.833 32.765 3.394 1 27.09 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . B 2 -0.507 34.17 3.472 1 24.8 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . B 2 -2.915 31.308 3.979 1 30.89 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . B 2 0.153 31.714 2.832 1 30.1 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . B 2 -0.218 30.535 2.319 1 38.41 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . B 2 0.989 36.064 3.089 1 25.77 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . B 2 2.248 36.669 2.705 1 25.89 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . B 2 2.114 38.002 2.831 1 25.45 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . B 2 0.789 38.259 3.303 1 23.1 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . B 2 3.49 35.882 2.228 1 25.43 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . B 2 3.109 39.164 2.6 1 26.57 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . B 2 4.437 39.018 2.6 1 35.96 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . B 2 -0.911 39.748 4.164 1 30.29 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . B 2 -1.393 41.061 4.518 1 35.58 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . B 2 -2.565 40.906 5.127 1 40.15 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . B 2 -2.869 39.487 5.177 1 37.79 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . B 2 -0.674 42.4 4.247 1 34.41 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . B 2 -3.451 42.053 5.66 1 44.1 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . B 2 -4.435 42.368 4.538 1 43.43 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . B 2 -5.42 43.434 4.934 1 56.16 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . B 2 -5.173 44.154 5.936 1 59.39 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . B 2 -6.454 43.565 4.228 1 62.69 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . B 2 -3.529 36.61 5.132 1 35.17 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . B 2 -1.58 34.861 4.006 1 27.11 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . B 2 0.13 37.066 3.448 1 26.61 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . B 2 -1.823 38.788 4.591 1 28.38 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . B 2 -1.703 36.882 4.315 1 31.76 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#