data_5OJC # _model_server_result.job_id G73oUoEnkFo3Hp-C-K0N7g _model_server_result.datetime_utc '2024-12-02 20:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ojc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5OJC # _exptl.entry_id 5OJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.82 _cell.angle_gamma 90 _cell.entry_id 5OJC _cell.length_a 34.532 _cell.length_b 51.8 _cell.length_c 39.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 93 A SER 92 1_555 A N MHS 94 A MHS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MHS 94 A MHS 93 1_555 A N ALA 95 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A NE2 MHS 94 A MHS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N1 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 242 n y N1 C5 IMD sing 243 n y N1 HN1 IMD sing 244 n n C2 N3 IMD doub 245 n y C2 H2 IMD sing 246 n n N3 C4 IMD sing 247 n y N3 HN3 IMD sing 248 n n C4 C5 IMD doub 249 n y C4 H4 IMD sing 250 n n C5 H5 IMD sing 251 n n # _atom_sites.entry_id 5OJC _atom_sites.fract_transf_matrix[1][1] 0.028959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004495 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 1 HEM HEM . C 3 IMD A 1 202 1 IMD IMD . D 4 HOH A 1 301 49 HOH HOH . D 4 HOH A 2 302 101 HOH HOH . D 4 HOH A 3 303 7 HOH HOH . D 4 HOH A 4 304 74 HOH HOH . D 4 HOH A 5 305 92 HOH HOH . D 4 HOH A 6 306 158 HOH HOH . D 4 HOH A 7 307 71 HOH HOH . D 4 HOH A 8 308 73 HOH HOH . D 4 HOH A 9 309 77 HOH HOH . D 4 HOH A 10 310 40 HOH HOH . D 4 HOH A 11 311 65 HOH HOH . D 4 HOH A 12 312 88 HOH HOH . D 4 HOH A 13 313 6 HOH HOH . D 4 HOH A 14 314 63 HOH HOH . D 4 HOH A 15 315 161 HOH HOH . D 4 HOH A 16 316 143 HOH HOH . D 4 HOH A 17 317 12 HOH HOH . D 4 HOH A 18 318 29 HOH HOH . D 4 HOH A 19 319 121 HOH HOH . D 4 HOH A 20 320 54 HOH HOH . D 4 HOH A 21 321 137 HOH HOH . D 4 HOH A 22 322 10 HOH HOH . D 4 HOH A 23 323 68 HOH HOH . D 4 HOH A 24 324 58 HOH HOH . D 4 HOH A 25 325 72 HOH HOH . D 4 HOH A 26 326 4 HOH HOH . D 4 HOH A 27 327 2 HOH HOH . D 4 HOH A 28 328 51 HOH HOH . D 4 HOH A 29 329 120 HOH HOH . D 4 HOH A 30 330 34 HOH HOH . D 4 HOH A 31 331 90 HOH HOH . D 4 HOH A 32 332 115 HOH HOH . D 4 HOH A 33 333 25 HOH HOH . D 4 HOH A 34 334 14 HOH HOH . D 4 HOH A 35 335 19 HOH HOH . D 4 HOH A 36 336 1 HOH HOH . D 4 HOH A 37 337 96 HOH HOH . D 4 HOH A 38 338 153 HOH HOH . D 4 HOH A 39 339 38 HOH HOH . D 4 HOH A 40 340 78 HOH HOH . D 4 HOH A 41 341 28 HOH HOH . D 4 HOH A 42 342 64 HOH HOH . D 4 HOH A 43 343 18 HOH HOH . D 4 HOH A 44 344 46 HOH HOH . D 4 HOH A 45 345 3 HOH HOH . D 4 HOH A 46 346 147 HOH HOH . D 4 HOH A 47 347 26 HOH HOH . D 4 HOH A 48 348 102 HOH HOH . D 4 HOH A 49 349 43 HOH HOH . D 4 HOH A 50 350 156 HOH HOH . D 4 HOH A 51 351 57 HOH HOH . D 4 HOH A 52 352 127 HOH HOH . D 4 HOH A 53 353 23 HOH HOH . D 4 HOH A 54 354 154 HOH HOH . D 4 HOH A 55 355 168 HOH HOH . D 4 HOH A 56 356 35 HOH HOH . D 4 HOH A 57 357 98 HOH HOH . D 4 HOH A 58 358 15 HOH HOH . D 4 HOH A 59 359 53 HOH HOH . D 4 HOH A 60 360 105 HOH HOH . D 4 HOH A 61 361 59 HOH HOH . D 4 HOH A 62 362 21 HOH HOH . D 4 HOH A 63 363 62 HOH HOH . D 4 HOH A 64 364 162 HOH HOH . D 4 HOH A 65 365 11 HOH HOH . D 4 HOH A 66 366 144 HOH HOH . D 4 HOH A 67 367 157 HOH HOH . D 4 HOH A 68 368 91 HOH HOH . D 4 HOH A 69 369 13 HOH HOH . D 4 HOH A 70 370 30 HOH HOH . D 4 HOH A 71 371 141 HOH HOH . D 4 HOH A 72 372 5 HOH HOH . D 4 HOH A 73 373 17 HOH HOH . D 4 HOH A 74 374 70 HOH HOH . D 4 HOH A 75 375 135 HOH HOH . D 4 HOH A 76 376 8 HOH HOH . D 4 HOH A 77 377 81 HOH HOH . D 4 HOH A 78 378 86 HOH HOH . D 4 HOH A 79 379 89 HOH HOH . D 4 HOH A 80 380 79 HOH HOH . D 4 HOH A 81 381 33 HOH HOH . D 4 HOH A 82 382 47 HOH HOH . D 4 HOH A 83 383 67 HOH HOH . D 4 HOH A 84 384 82 HOH HOH . D 4 HOH A 85 385 32 HOH HOH . D 4 HOH A 86 386 16 HOH HOH . D 4 HOH A 87 387 37 HOH HOH . D 4 HOH A 88 388 27 HOH HOH . D 4 HOH A 89 389 55 HOH HOH . D 4 HOH A 90 390 44 HOH HOH . D 4 HOH A 91 391 22 HOH HOH . D 4 HOH A 92 392 31 HOH HOH . D 4 HOH A 93 393 149 HOH HOH . D 4 HOH A 94 394 61 HOH HOH . D 4 HOH A 95 395 20 HOH HOH . D 4 HOH A 96 396 48 HOH HOH . D 4 HOH A 97 397 36 HOH HOH . D 4 HOH A 98 398 9 HOH HOH . D 4 HOH A 99 399 60 HOH HOH . D 4 HOH A 100 400 52 HOH HOH . D 4 HOH A 101 401 140 HOH HOH . D 4 HOH A 102 402 97 HOH HOH . D 4 HOH A 103 403 122 HOH HOH . D 4 HOH A 104 404 104 HOH HOH . D 4 HOH A 105 405 66 HOH HOH . D 4 HOH A 106 406 50 HOH HOH . D 4 HOH A 107 407 99 HOH HOH . D 4 HOH A 108 408 39 HOH HOH . D 4 HOH A 109 409 151 HOH HOH . D 4 HOH A 110 410 80 HOH HOH . D 4 HOH A 111 411 100 HOH HOH . D 4 HOH A 112 412 139 HOH HOH . D 4 HOH A 113 413 93 HOH HOH . D 4 HOH A 114 414 146 HOH HOH . D 4 HOH A 115 415 152 HOH HOH . D 4 HOH A 116 416 133 HOH HOH . D 4 HOH A 117 417 117 HOH HOH . D 4 HOH A 118 418 119 HOH HOH . D 4 HOH A 119 419 166 HOH HOH . D 4 HOH A 120 420 56 HOH HOH . D 4 HOH A 121 421 94 HOH HOH . D 4 HOH A 122 422 169 HOH HOH . D 4 HOH A 123 423 118 HOH HOH . D 4 HOH A 124 424 114 HOH HOH . D 4 HOH A 125 425 87 HOH HOH . D 4 HOH A 126 426 134 HOH HOH . D 4 HOH A 127 427 110 HOH HOH . D 4 HOH A 128 428 113 HOH HOH . D 4 HOH A 129 429 163 HOH HOH . D 4 HOH A 130 430 123 HOH HOH . D 4 HOH A 131 431 130 HOH HOH . D 4 HOH A 132 432 103 HOH HOH . D 4 HOH A 133 433 129 HOH HOH . D 4 HOH A 134 434 124 HOH HOH . D 4 HOH A 135 435 84 HOH HOH . D 4 HOH A 136 436 111 HOH HOH . D 4 HOH A 137 437 106 HOH HOH . D 4 HOH A 138 438 126 HOH HOH . D 4 HOH A 139 439 109 HOH HOH . D 4 HOH A 140 440 150 HOH HOH . D 4 HOH A 141 441 164 HOH HOH . D 4 HOH A 142 442 83 HOH HOH . D 4 HOH A 143 443 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 -2.665 -0.943 -15.887 1 19.01 ? N1 IMD 202 A 1 HETATM 2 C C2 IMD . . . C 3 -2.737 -1.572 -14.7 1 16.98 ? C2 IMD 202 A 1 HETATM 3 N N3 IMD . . . C 3 -2.67 -0.597 -13.781 1 18.69 ? N3 IMD 202 A 1 HETATM 4 C C4 IMD . . . C 3 -2.554 0.593 -14.398 1 16.87 ? C4 IMD 202 A 1 HETATM 5 C C5 IMD . . . C 3 -2.551 0.38 -15.757 1 20.43 ? C5 IMD 202 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #