data_5OJO # _model_server_result.job_id BunqVz1sUM_Hx51fRnAdcA _model_server_result.datetime_utc '2024-10-19 21:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ojo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5OJO # _exptl.entry_id 5OJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OJO _cell.length_a 87.54 _cell.length_b 87.54 _cell.length_c 316.92 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J,L 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 251 A CYS 274 1_555 B SG CYS 251 B CYS 274 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale1 C C GZB 1 C GZB 1 1_555 C N VAL 2 C VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C LEU 3 C LEU 3 1_555 C N HLY 4 C HLY 4 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C LEU 3 C LEU 3 1_555 C N SKH 4 C SKH 4 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.307 ? covale ? covale4 C C HLY 4 C HLY 4 1_555 C N GLU 5 C GLU 5 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C SKH 4 C SKH 4 1_555 C N GLU 5 C GLU 5 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 139 A CYS 162 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A SG CYS 142 A CYS 165 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A SG CYS 180 A CYS 203 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A SG CYS 185 A CYS 208 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 B SG CYS 139 B CYS 162 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc6 B SG CYS 142 B CYS 165 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 B SG CYS 180 B CYS 203 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 B SG CYS 185 B CYS 208 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 B OD2 ASP 203 B ASP 226 1_555 I NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc10 B OD2 ASP 203 B ASP 226 1_555 I NA NA . B NA 303 12_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5OJO _atom_sites.fract_transf_matrix[1][1] 0.011423 _atom_sites.fract_transf_matrix[1][2] 0.006595 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 DMS A 1 301 301 DMS DMS . E 4 ZN A 1 302 302 ZN ZN . F 5 EDO A 1 303 303 EDO EDO . G 6 EPE B 1 301 301 EPE EPE . H 4 ZN B 1 302 302 ZN ZN . I 7 NA B 1 303 303 NA NA . J 8 HOH A 1 401 401 HOH HOH . J 8 HOH A 2 402 402 HOH HOH . J 8 HOH A 3 403 403 HOH HOH . J 8 HOH A 4 404 404 HOH HOH . J 8 HOH A 5 405 405 HOH HOH . J 8 HOH A 6 406 406 HOH HOH . J 8 HOH A 7 407 407 HOH HOH . J 8 HOH A 8 408 408 HOH HOH . J 8 HOH A 9 409 409 HOH HOH . J 8 HOH A 10 410 410 HOH HOH . J 8 HOH A 11 411 411 HOH HOH . J 8 HOH A 12 412 412 HOH HOH . J 8 HOH A 13 413 413 HOH HOH . J 8 HOH A 14 414 414 HOH HOH . J 8 HOH A 15 415 415 HOH HOH . J 8 HOH A 16 416 416 HOH HOH . J 8 HOH A 17 417 417 HOH HOH . J 8 HOH A 18 418 418 HOH HOH . J 8 HOH A 19 419 419 HOH HOH . J 8 HOH A 20 420 420 HOH HOH . J 8 HOH A 21 421 421 HOH HOH . J 8 HOH A 22 422 422 HOH HOH . J 8 HOH A 23 423 423 HOH HOH . J 8 HOH A 24 424 424 HOH HOH . J 8 HOH A 25 425 425 HOH HOH . J 8 HOH A 26 426 426 HOH HOH . J 8 HOH A 27 427 427 HOH HOH . J 8 HOH A 28 428 428 HOH HOH . J 8 HOH A 29 429 429 HOH HOH . J 8 HOH A 30 430 430 HOH HOH . J 8 HOH A 31 431 431 HOH HOH . J 8 HOH A 32 432 432 HOH HOH . J 8 HOH A 33 433 433 HOH HOH . J 8 HOH A 34 434 434 HOH HOH . J 8 HOH A 35 435 435 HOH HOH . K 8 HOH B 1 401 401 HOH HOH . K 8 HOH B 2 402 402 HOH HOH . K 8 HOH B 3 403 403 HOH HOH . K 8 HOH B 4 404 404 HOH HOH . K 8 HOH B 5 405 405 HOH HOH . K 8 HOH B 6 406 406 HOH HOH . K 8 HOH B 7 407 407 HOH HOH . K 8 HOH B 8 408 408 HOH HOH . K 8 HOH B 9 409 409 HOH HOH . K 8 HOH B 10 410 410 HOH HOH . K 8 HOH B 11 411 411 HOH HOH . K 8 HOH B 12 412 412 HOH HOH . K 8 HOH B 13 413 413 HOH HOH . K 8 HOH B 14 414 414 HOH HOH . K 8 HOH B 15 415 415 HOH HOH . K 8 HOH B 16 416 416 HOH HOH . K 8 HOH B 17 417 417 HOH HOH . K 8 HOH B 18 418 418 HOH HOH . K 8 HOH B 19 419 419 HOH HOH . K 8 HOH B 20 420 420 HOH HOH . K 8 HOH B 21 421 421 HOH HOH . K 8 HOH B 22 422 422 HOH HOH . L 8 HOH C 1 101 101 HOH HOH . L 8 HOH C 2 102 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 6.515 32.765 -12.484 1 74.99 ? S DMS 301 A 1 HETATM 2 O O DMS . . . D 3 7.018 31.5 -13.05 1 71.48 ? O DMS 301 A 1 HETATM 3 C C1 DMS . . . D 3 7.527 34.05 -12.987 1 72.04 ? C1 DMS 301 A 1 HETATM 4 C C2 DMS . . . D 3 5.048 33.149 -13.264 1 73.53 ? C2 DMS 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #