data_5OK0 # _model_server_result.job_id ru94RRZpTOg2153KNUmkmQ _model_server_result.datetime_utc '2024-11-08 13:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ok0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5OK0 # _exptl.entry_id 5OK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-PROPANDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OK0 _cell.length_a 36.81 _cell.length_b 54.94 _cell.length_c 103.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A O ASN 10 A ASN 10 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc4 B O1P B16 . A B16 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 C MG MG . A MG 302 1_555 E O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 C MG MG . A MG 302 1_555 E O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-PROPANDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PDO sing 258 n n C1 C2 PDO sing 259 n n C1 H11 PDO sing 260 n n C1 H12 PDO sing 261 n n O1 HO1 PDO sing 262 n n C2 C3 PDO sing 263 n n C2 H21 PDO sing 264 n n C2 H22 PDO sing 265 n n C3 O3 PDO sing 266 n n C3 H31 PDO sing 267 n n C3 H32 PDO sing 268 n n O3 HO3 PDO sing 269 n n # _atom_sites.entry_id 5OK0 _atom_sites.fract_transf_matrix[1][1] 0.027167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B16 A 1 301 1 B16 B16 . C 3 MG A 1 302 1 MG MG . D 4 PDO A 1 303 1 PDO PDO . E 5 HOH A 1 401 50 HOH HOH . E 5 HOH A 2 402 27 HOH HOH . E 5 HOH A 3 403 25 HOH HOH . E 5 HOH A 4 404 55 HOH HOH . E 5 HOH A 5 405 76 HOH HOH . E 5 HOH A 6 406 8 HOH HOH . E 5 HOH A 7 407 30 HOH HOH . E 5 HOH A 8 408 53 HOH HOH . E 5 HOH A 9 409 13 HOH HOH . E 5 HOH A 10 410 6 HOH HOH . E 5 HOH A 11 411 74 HOH HOH . E 5 HOH A 12 412 52 HOH HOH . E 5 HOH A 13 413 4 HOH HOH . E 5 HOH A 14 414 65 HOH HOH . E 5 HOH A 15 415 21 HOH HOH . E 5 HOH A 16 416 54 HOH HOH . E 5 HOH A 17 417 44 HOH HOH . E 5 HOH A 18 418 80 HOH HOH . E 5 HOH A 19 419 39 HOH HOH . E 5 HOH A 20 420 66 HOH HOH . E 5 HOH A 21 421 62 HOH HOH . E 5 HOH A 22 422 77 HOH HOH . E 5 HOH A 23 423 49 HOH HOH . E 5 HOH A 24 424 51 HOH HOH . E 5 HOH A 25 425 5 HOH HOH . E 5 HOH A 26 426 29 HOH HOH . E 5 HOH A 27 427 31 HOH HOH . E 5 HOH A 28 428 28 HOH HOH . E 5 HOH A 29 429 48 HOH HOH . E 5 HOH A 30 430 23 HOH HOH . E 5 HOH A 31 431 24 HOH HOH . E 5 HOH A 32 432 1 HOH HOH . E 5 HOH A 33 433 64 HOH HOH . E 5 HOH A 34 434 63 HOH HOH . E 5 HOH A 35 435 78 HOH HOH . E 5 HOH A 36 436 70 HOH HOH . E 5 HOH A 37 437 36 HOH HOH . E 5 HOH A 38 438 73 HOH HOH . E 5 HOH A 39 439 22 HOH HOH . E 5 HOH A 40 440 68 HOH HOH . E 5 HOH A 41 441 2 HOH HOH . E 5 HOH A 42 442 58 HOH HOH . E 5 HOH A 43 443 18 HOH HOH . E 5 HOH A 44 444 26 HOH HOH . E 5 HOH A 45 445 15 HOH HOH . E 5 HOH A 46 446 75 HOH HOH . E 5 HOH A 47 447 3 HOH HOH . E 5 HOH A 48 448 59 HOH HOH . E 5 HOH A 49 449 38 HOH HOH . E 5 HOH A 50 450 47 HOH HOH . E 5 HOH A 51 451 33 HOH HOH . E 5 HOH A 52 452 45 HOH HOH . E 5 HOH A 53 453 32 HOH HOH . E 5 HOH A 54 454 10 HOH HOH . E 5 HOH A 55 455 61 HOH HOH . E 5 HOH A 56 456 40 HOH HOH . E 5 HOH A 57 457 35 HOH HOH . E 5 HOH A 58 458 60 HOH HOH . E 5 HOH A 59 459 41 HOH HOH . E 5 HOH A 60 460 79 HOH HOH . E 5 HOH A 61 461 12 HOH HOH . E 5 HOH A 62 462 20 HOH HOH . E 5 HOH A 63 463 37 HOH HOH . E 5 HOH A 64 464 69 HOH HOH . E 5 HOH A 65 465 57 HOH HOH . E 5 HOH A 66 466 83 HOH HOH . E 5 HOH A 67 467 16 HOH HOH . E 5 HOH A 68 468 34 HOH HOH . E 5 HOH A 69 469 72 HOH HOH . E 5 HOH A 70 470 56 HOH HOH . E 5 HOH A 71 471 71 HOH HOH . E 5 HOH A 72 472 17 HOH HOH . E 5 HOH A 73 473 86 HOH HOH . E 5 HOH A 74 474 42 HOH HOH . E 5 HOH A 75 475 85 HOH HOH . E 5 HOH A 76 476 14 HOH HOH . E 5 HOH A 77 477 81 HOH HOH . E 5 HOH A 78 478 19 HOH HOH . E 5 HOH A 79 479 67 HOH HOH . E 5 HOH A 80 480 84 HOH HOH . E 5 HOH A 81 481 82 HOH HOH . E 5 HOH A 82 482 46 HOH HOH . E 5 HOH A 83 483 11 HOH HOH . E 5 HOH A 84 484 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PDO . . . D 4 27.227 -9.71 -10.356 1 32.77 ? C1 PDO 303 A 1 HETATM 2 O O1 PDO . . . D 4 27.599 -8.408 -10.832 1 29.35 ? O1 PDO 303 A 1 HETATM 3 C C2 PDO . . . D 4 27.708 -10.855 -11.259 1 32.67 ? C2 PDO 303 A 1 HETATM 4 C C3 PDO . . . D 4 29.203 -11.269 -11.114 1 35.14 ? C3 PDO 303 A 1 HETATM 5 O O3 PDO . . . D 4 29.761 -11.314 -9.766 1 34.54 ? O3 PDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #