data_5OK0
#
_model_server_result.job_id            TMSzQkhIpbth493DMJdb7A 
_model_server_result.datetime_utc      '2024-11-27 23:43:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ok0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5OK0 
#
_exptl.entry_id    5OK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,3-PROPANDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OK0 
_cell.length_a            36.81 
_cell.length_b            54.94 
_cell.length_c            103.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 A O ASN 10 A ASN 10 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc4 B O1P B16 . A B16 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc5 C MG MG . A MG 302 1_555 E O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc6 C MG MG . A MG 302 1_555 E O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,3-PROPANDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PDO sing 258 n n 
C1 C2 PDO sing 259 n n 
C1 H11 PDO sing 260 n n 
C1 H12 PDO sing 261 n n 
O1 HO1 PDO sing 262 n n 
C2 C3 PDO sing 263 n n 
C2 H21 PDO sing 264 n n 
C2 H22 PDO sing 265 n n 
C3 O3 PDO sing 266 n n 
C3 H31 PDO sing 267 n n 
C3 H32 PDO sing 268 n n 
O3 HO3 PDO sing 269 n n 
#
_atom_sites.entry_id                     5OK0 
_atom_sites.fract_transf_matrix[1][1]    0.027167 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 B16 A 1 301 1 B16 B16 . 
C 3 MG A 1 302 1 MG MG . 
D 4 PDO A 1 303 1 PDO PDO . 
E 5 HOH A 1 401 50 HOH HOH . 
E 5 HOH A 2 402 27 HOH HOH . 
E 5 HOH A 3 403 25 HOH HOH . 
E 5 HOH A 4 404 55 HOH HOH . 
E 5 HOH A 5 405 76 HOH HOH . 
E 5 HOH A 6 406 8 HOH HOH . 
E 5 HOH A 7 407 30 HOH HOH . 
E 5 HOH A 8 408 53 HOH HOH . 
E 5 HOH A 9 409 13 HOH HOH . 
E 5 HOH A 10 410 6 HOH HOH . 
E 5 HOH A 11 411 74 HOH HOH . 
E 5 HOH A 12 412 52 HOH HOH . 
E 5 HOH A 13 413 4 HOH HOH . 
E 5 HOH A 14 414 65 HOH HOH . 
E 5 HOH A 15 415 21 HOH HOH . 
E 5 HOH A 16 416 54 HOH HOH . 
E 5 HOH A 17 417 44 HOH HOH . 
E 5 HOH A 18 418 80 HOH HOH . 
E 5 HOH A 19 419 39 HOH HOH . 
E 5 HOH A 20 420 66 HOH HOH . 
E 5 HOH A 21 421 62 HOH HOH . 
E 5 HOH A 22 422 77 HOH HOH . 
E 5 HOH A 23 423 49 HOH HOH . 
E 5 HOH A 24 424 51 HOH HOH . 
E 5 HOH A 25 425 5 HOH HOH . 
E 5 HOH A 26 426 29 HOH HOH . 
E 5 HOH A 27 427 31 HOH HOH . 
E 5 HOH A 28 428 28 HOH HOH . 
E 5 HOH A 29 429 48 HOH HOH . 
E 5 HOH A 30 430 23 HOH HOH . 
E 5 HOH A 31 431 24 HOH HOH . 
E 5 HOH A 32 432 1 HOH HOH . 
E 5 HOH A 33 433 64 HOH HOH . 
E 5 HOH A 34 434 63 HOH HOH . 
E 5 HOH A 35 435 78 HOH HOH . 
E 5 HOH A 36 436 70 HOH HOH . 
E 5 HOH A 37 437 36 HOH HOH . 
E 5 HOH A 38 438 73 HOH HOH . 
E 5 HOH A 39 439 22 HOH HOH . 
E 5 HOH A 40 440 68 HOH HOH . 
E 5 HOH A 41 441 2 HOH HOH . 
E 5 HOH A 42 442 58 HOH HOH . 
E 5 HOH A 43 443 18 HOH HOH . 
E 5 HOH A 44 444 26 HOH HOH . 
E 5 HOH A 45 445 15 HOH HOH . 
E 5 HOH A 46 446 75 HOH HOH . 
E 5 HOH A 47 447 3 HOH HOH . 
E 5 HOH A 48 448 59 HOH HOH . 
E 5 HOH A 49 449 38 HOH HOH . 
E 5 HOH A 50 450 47 HOH HOH . 
E 5 HOH A 51 451 33 HOH HOH . 
E 5 HOH A 52 452 45 HOH HOH . 
E 5 HOH A 53 453 32 HOH HOH . 
E 5 HOH A 54 454 10 HOH HOH . 
E 5 HOH A 55 455 61 HOH HOH . 
E 5 HOH A 56 456 40 HOH HOH . 
E 5 HOH A 57 457 35 HOH HOH . 
E 5 HOH A 58 458 60 HOH HOH . 
E 5 HOH A 59 459 41 HOH HOH . 
E 5 HOH A 60 460 79 HOH HOH . 
E 5 HOH A 61 461 12 HOH HOH . 
E 5 HOH A 62 462 20 HOH HOH . 
E 5 HOH A 63 463 37 HOH HOH . 
E 5 HOH A 64 464 69 HOH HOH . 
E 5 HOH A 65 465 57 HOH HOH . 
E 5 HOH A 66 466 83 HOH HOH . 
E 5 HOH A 67 467 16 HOH HOH . 
E 5 HOH A 68 468 34 HOH HOH . 
E 5 HOH A 69 469 72 HOH HOH . 
E 5 HOH A 70 470 56 HOH HOH . 
E 5 HOH A 71 471 71 HOH HOH . 
E 5 HOH A 72 472 17 HOH HOH . 
E 5 HOH A 73 473 86 HOH HOH . 
E 5 HOH A 74 474 42 HOH HOH . 
E 5 HOH A 75 475 85 HOH HOH . 
E 5 HOH A 76 476 14 HOH HOH . 
E 5 HOH A 77 477 81 HOH HOH . 
E 5 HOH A 78 478 19 HOH HOH . 
E 5 HOH A 79 479 67 HOH HOH . 
E 5 HOH A 80 480 84 HOH HOH . 
E 5 HOH A 81 481 82 HOH HOH . 
E 5 HOH A 82 482 46 HOH HOH . 
E 5 HOH A 83 483 11 HOH HOH . 
E 5 HOH A 84 484 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PDO . . . D 4 27.227 -9.71 -10.356 1 32.77 ? C1 PDO 303 A 1 
HETATM 2 O O1 PDO . . . D 4 27.599 -8.408 -10.832 1 29.35 ? O1 PDO 303 A 1 
HETATM 3 C C2 PDO . . . D 4 27.708 -10.855 -11.259 1 32.67 ? C2 PDO 303 A 1 
HETATM 4 C C3 PDO . . . D 4 29.203 -11.269 -11.114 1 35.14 ? C3 PDO 303 A 1 
HETATM 5 O O3 PDO . . . D 4 29.761 -11.314 -9.766 1 34.54 ? O3 PDO 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#