data_5OK1
#
_model_server_result.job_id            xVKwl4czaHH06dRrMiCoWw 
_model_server_result.datetime_utc      '2024-12-03 09:32:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ok1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5OK1 
#
_exptl.entry_id    5OK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.116 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,6-di-O-phosphono-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OK1 
_cell.length_a            36.71 
_cell.length_b            74.49 
_cell.length_c            78.56 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc2 A OD2 ASP 8 A ASP 8 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc3 A O ASN 10 A ASN 10 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc4 A OD1 ASP 170 A ASP 170 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc5 B MG MG . A MG 301 1_555 C O2X B16 . A B16 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc6 B MG MG . A MG 301 1_555 D O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? 
metalc ? metalc7 B MG MG . A MG 301 1_555 D O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'C6 H14 O12 P2' 
_chem_comp.formula_weight    340.116 
_chem_comp.id                B16 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,6-di-O-phosphono-beta-D-glucopyranose 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     1,6-di-O-phosphono-beta-D-glucose;1,6-di-O-phosphono-D-glucose;1,6-di-O-phosphono-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O6 B16 sing 70 n n 
P O1P B16 sing 71 n n 
P O2P B16 sing 72 n n 
P O3P B16 doub 73 n n 
P' O1 B16 sing 74 n n 
P' O1X B16 sing 75 n n 
P' O2X B16 doub 76 n n 
P' O3X B16 sing 77 n n 
C1 O1 B16 sing 78 n n 
C1 C2 B16 sing 79 n n 
C1 O5 B16 sing 80 n n 
C2 O2 B16 sing 81 n n 
C2 C3 B16 sing 82 n n 
C3 O3 B16 sing 83 n n 
C3 C4 B16 sing 84 n n 
C4 O4 B16 sing 85 n n 
C4 C5 B16 sing 86 n n 
C5 O5 B16 sing 87 n n 
C5 C6 B16 sing 88 n n 
C6 O6 B16 sing 89 n n 
C1 H1 B16 sing 90 n n 
C2 H2 B16 sing 91 n n 
O2 HO2 B16 sing 92 n n 
C3 H3 B16 sing 93 n n 
O3 HO3 B16 sing 94 n n 
C4 H4 B16 sing 95 n n 
O4 HO4 B16 sing 96 n n 
C5 H5 B16 sing 97 n n 
C6 H61 B16 sing 98 n n 
C6 H62 B16 sing 99 n n 
O1P HO1P B16 sing 100 n n 
O2P HO2P B16 sing 101 n n 
O1X HO1X B16 sing 102 n n 
O3X HO3X B16 sing 103 n n 
#
_pdbx_chem_comp_identifier.comp_id            B16 
_pdbx_chem_comp_identifier.identifier         b-D-Glcp1PO36PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5OK1 
_atom_sites.fract_transf_matrix[1][1]    0.027241 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 1 MG MG . 
C 3 B16 A 1 302 1 B16 B16 . 
D 4 HOH A 1 401 6 HOH HOH . 
D 4 HOH A 2 402 8 HOH HOH . 
D 4 HOH A 3 403 37 HOH HOH . 
D 4 HOH A 4 404 11 HOH HOH . 
D 4 HOH A 5 405 50 HOH HOH . 
D 4 HOH A 6 406 2 HOH HOH . 
D 4 HOH A 7 407 55 HOH HOH . 
D 4 HOH A 8 408 58 HOH HOH . 
D 4 HOH A 9 409 20 HOH HOH . 
D 4 HOH A 10 410 40 HOH HOH . 
D 4 HOH A 11 411 56 HOH HOH . 
D 4 HOH A 12 412 57 HOH HOH . 
D 4 HOH A 13 413 29 HOH HOH . 
D 4 HOH A 14 414 47 HOH HOH . 
D 4 HOH A 15 415 26 HOH HOH . 
D 4 HOH A 16 416 4 HOH HOH . 
D 4 HOH A 17 417 19 HOH HOH . 
D 4 HOH A 18 418 68 HOH HOH . 
D 4 HOH A 19 419 39 HOH HOH . 
D 4 HOH A 20 420 7 HOH HOH . 
D 4 HOH A 21 421 54 HOH HOH . 
D 4 HOH A 22 422 38 HOH HOH . 
D 4 HOH A 23 423 41 HOH HOH . 
D 4 HOH A 24 424 31 HOH HOH . 
D 4 HOH A 25 425 52 HOH HOH . 
D 4 HOH A 26 426 66 HOH HOH . 
D 4 HOH A 27 427 44 HOH HOH . 
D 4 HOH A 28 428 43 HOH HOH . 
D 4 HOH A 29 429 53 HOH HOH . 
D 4 HOH A 30 430 17 HOH HOH . 
D 4 HOH A 31 431 21 HOH HOH . 
D 4 HOH A 32 432 65 HOH HOH . 
D 4 HOH A 33 433 51 HOH HOH . 
D 4 HOH A 34 434 62 HOH HOH . 
D 4 HOH A 35 435 1 HOH HOH . 
D 4 HOH A 36 436 15 HOH HOH . 
D 4 HOH A 37 437 24 HOH HOH . 
D 4 HOH A 38 438 30 HOH HOH . 
D 4 HOH A 39 439 60 HOH HOH . 
D 4 HOH A 40 440 12 HOH HOH . 
D 4 HOH A 41 441 18 HOH HOH . 
D 4 HOH A 42 442 49 HOH HOH . 
D 4 HOH A 43 443 64 HOH HOH . 
D 4 HOH A 44 444 42 HOH HOH . 
D 4 HOH A 45 445 10 HOH HOH . 
D 4 HOH A 46 446 32 HOH HOH . 
D 4 HOH A 47 447 33 HOH HOH . 
D 4 HOH A 48 448 36 HOH HOH . 
D 4 HOH A 49 449 16 HOH HOH . 
D 4 HOH A 50 450 13 HOH HOH . 
D 4 HOH A 51 451 35 HOH HOH . 
D 4 HOH A 52 452 5 HOH HOH . 
D 4 HOH A 53 453 3 HOH HOH . 
D 4 HOH A 54 454 14 HOH HOH . 
D 4 HOH A 55 455 63 HOH HOH . 
D 4 HOH A 56 456 59 HOH HOH . 
D 4 HOH A 57 457 28 HOH HOH . 
D 4 HOH A 58 458 61 HOH HOH . 
D 4 HOH A 59 459 48 HOH HOH . 
D 4 HOH A 60 460 45 HOH HOH . 
D 4 HOH A 61 461 23 HOH HOH . 
D 4 HOH A 62 462 34 HOH HOH . 
D 4 HOH A 63 463 27 HOH HOH . 
D 4 HOH A 64 464 67 HOH HOH . 
D 4 HOH A 65 465 25 HOH HOH . 
D 4 HOH A 66 466 22 HOH HOH . 
D 4 HOH A 67 467 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P B16 . . . C 3 -14.876 -10.425 13.456 1 34.09 ? P B16 302 A 1 
HETATM 2 P P' B16 . . . C 3 -16.015 -5.887 7.116 1 34.88 ? P' B16 302 A 1 
HETATM 3 C C1 B16 . . . C 3 -16.93 -7.874 8.767 1 38.75 ? C1 B16 302 A 1 
HETATM 4 O O1 B16 . . . C 3 -15.864 -7.23 8.035 1 37.33 ? O1 B16 302 A 1 
HETATM 5 C C2 B16 . . . C 3 -17.527 -9.073 8.003 1 36.36 ? C2 B16 302 A 1 
HETATM 6 O O2 B16 . . . C 3 -18.089 -8.603 6.756 1 32.9 ? O2 B16 302 A 1 
HETATM 7 C C3 B16 . . . C 3 -18.584 -9.779 8.887 1 37.04 ? C3 B16 302 A 1 
HETATM 8 O O3 B16 . . . C 3 -19.152 -10.968 8.307 1 33.21 ? O3 B16 302 A 1 
HETATM 9 C C4 B16 . . . C 3 -17.949 -10.144 10.225 1 37.24 ? C4 B16 302 A 1 
HETATM 10 O O4 B16 . . . C 3 -18.899 -10.875 11.019 1 36.63 ? O4 B16 302 A 1 
HETATM 11 C C5 B16 . . . C 3 -17.44 -8.871 10.921 1 36.42 ? C5 B16 302 A 1 
HETATM 12 O O5 B16 . . . C 3 -16.441 -8.268 10.074 1 41.19 ? O5 B16 302 A 1 
HETATM 13 C C6 B16 . . . C 3 -16.905 -9.152 12.329 1 38.64 ? C6 B16 302 A 1 
HETATM 14 O O6 B16 . . . C 3 -15.774 -10.003 12.232 1 34.35 ? O6 B16 302 A 1 
HETATM 15 O O1P B16 . . . C 3 -15.5 -11.662 14.033 1 35.99 ? O1P B16 302 A 1 
HETATM 16 O O2P B16 . . . C 3 -14.776 -9.401 14.542 1 33.16 ? O2P B16 302 A 1 
HETATM 17 O O3P B16 . . . C 3 -13.489 -10.706 12.905 1 32.28 ? O3P B16 302 A 1 
HETATM 18 O O1X B16 . . . C 3 -16.719 -4.743 7.822 1 30.99 ? O1X B16 302 A 1 
HETATM 19 O O2X B16 . . . C 3 -16.733 -6.168 5.799 1 33.8 ? O2X B16 302 A 1 
HETATM 20 O O3X B16 . . . C 3 -14.551 -5.553 6.8 1 33.33 ? O3X B16 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#